BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0162.0008.p (236 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_692439.1| L-serine dehydratase beta subunit [Oceanobacill... 192 5e-48 ref|NP_243363.1| L-serine dehydratase beta subunit [Bacillus hal... 192 7e-48 ref|ZP_00182478.1| hypothetical protein Exigu219901 [Exiguobacte... 182 8e-45 ref|NP_658179.1| ACT, small ligand binding domain [Bacillus anth... 180 2e-44 ref|NP_980502.1| L-serine dehydratase, iron-sulfur-dependent, be... 179 6e-44 >ref|NP_692439.1| L-serine dehydratase beta subunit [Oceanobacillus iheyensis HTE831] dbj|BAC13474.1| L-serine dehydratase beta subunit [Oceanobacillus iheyensis HTE831] Length = 220 Score = 192 bits (488), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 95/220 (43%), Positives = 141/220 (64%), Gaps = 2/220 (0%) Query: 1 MRFKDVFSIIGPAMVGPSSSHTXXXXXXXXXXXQVLGEPAREAEVTFFGSFAATYQGHGT 60 M++ VF IIGP MVGPSSSHT + G+ + A++ + SFA TY+GHGT Sbjct: 1 MKYNSVFDIIGPVMVGPSSSHTAGAARIGKAARNLFGKQPKWAKIHLYESFAKTYRGHGT 60 Query: 61 DRAIAGGLLNFATDDSRLPDSIELAAEAGMEISFGQGTGLFPHPNTVRLHLVGAQTGTEL 120 D A+AGGLL F TDD R+ D++E+A + G+EI F + + HPNT RL ++G + + Sbjct: 61 DFALAGGLLGFETDDPRMNDALEIAKDQGLEIEFIEDSASASHPNTARL-IIGDENDQQ- 118 Query: 121 TLTGISIGGGNIEIVDIDGFGVKLTGMYPTVLIHHMDYLGVLASVTDVMRKGQFNIGHMS 180 L GISIGGG +EI +++GF ++L+G +P +LI H D G +ASVT ++ K + NIGHM Sbjct: 119 ELMGISIGGGKVEITELNGFELRLSGNHPAILIMHNDRFGAIASVTKILAKHEINIGHME 178 Query: 181 LDRKNRSGAALTVLELDEAATPGLLHELRALSAVKSVKVV 220 ++RK+ AL V+E+D+ +L+EL A + S+ + Sbjct: 179 VNRKDVGKEALMVIEVDQNIEDEILNELNAADHIISISKI 218 >ref|NP_243363.1| L-serine dehydratase beta subunit [Bacillus halodurans] pir||A83962 L-serine dehydratase beta subunit BH2497 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06216.1| L-serine dehydratase beta subunit [Bacillus halodurans] Length = 220 Score = 192 bits (487), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 140/218 (64%), Gaps = 4/218 (1%) Query: 1 MRFKDVFSIIGPAMVGPSSSHTXXXXXXXXXXXQVLGEPAREAEVTFFGSFAATYQGHGT 60 M+++ VF IIGP M+GPSSSHT + G+ ++ F+GSFA TY+GHGT Sbjct: 1 MKYRTVFDIIGPVMIGPSSSHTAGAARIGRVARTLFGQQPERCDIYFYGSFAETYKGHGT 60 Query: 61 DRAIAGGLLNFATDDSRLPDSIELAAEAGMEISFGQGTGLFPHPNTVRLHLVGAQTGT-E 119 D AI GG+L+F T D R+P S++LA E G+ + F + + HPNT ++ L Q G + Sbjct: 61 DVAIVGGILDFDTFDPRIPRSLQLAKEKGVRVYFHEEEAITDHPNTAKVVL---QKGEDQ 117 Query: 120 LTLTGISIGGGNIEIVDIDGFGVKLTGMYPTVLIHHMDYLGVLASVTDVMRKGQFNIGHM 179 L + G+SIGGG IEIV+++GF +KL+G +P +L+ H D GV+ASV++++ K + NIGHM Sbjct: 118 LEVVGVSIGGGKIEIVELNGFHLKLSGNHPAILVVHTDRFGVIASVSNMLAKHEINIGHM 177 Query: 180 SLDRKNRSGAALTVLELDEAATPGLLHELRALSAVKSV 217 + RK + AL V+E+D+ LL EL L + +V Sbjct: 178 EVSRKEKGKEALMVIEVDQNVDDLLLQELERLPNIVTV 215 >ref|ZP_00182478.1| hypothetical protein Exigu219901 [Exiguobacterium sp. 255-15] Length = 220 Score = 182 bits (461), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 92/215 (42%), Positives = 131/215 (60%), Gaps = 2/215 (0%) Query: 1 MRFKDVFSIIGPAMVGPSSSHTXXXXXXXXXXXQVLGEPAREAEVTFFGSFAATYQGHGT 60 M+++ VF IIGP MVGPSSSHT ++ GE + +TF+GSFA TY+GHGT Sbjct: 1 MKYRSVFDIIGPIMVGPSSSHTAGAARIGLMAGKLFGEQPTDITITFYGSFADTYRGHGT 60 Query: 61 DRAIAGGLLNFATDDSRLPDSIELAAEAGMEISFGQGTGLFPHPNTVRLHLVGAQTGTEL 120 D AI GG+L + T D R+P+SI++A + G+ I F L HPNT R+HL Q E Sbjct: 61 DVAIIGGVLGYDTFDDRIPESIKIAEQKGIRIHFETSEALTDHPNTARVHLTDGQ--AEF 118 Query: 121 TLTGISIGGGNIEIVDIDGFGVKLTGMYPTVLIHHMDYLGVLASVTDVMRKGQFNIGHMS 180 L GISIGGG IEI +++G +KL+G P +++ H D G +A+VT ++ + NIGHM Sbjct: 119 ELVGISIGGGTIEITELNGVPLKLSGGGPALIVLHHDRFGAIAAVTSILADYEINIGHME 178 Query: 181 LDRKNRSGAALTVLELDEAATPGLLHELRALSAVK 215 + R + AL +E+D+ +L E+ L V+ Sbjct: 179 VSRHEKGKQALMAIEIDDRMPTAVLEEINRLPQVE 213 >ref|NP_658179.1| ACT, small ligand binding domain [Bacillus anthracis A2012] ref|NP_846592.1| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus anthracis str. Ames] gb|AAP28078.1| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus anthracis str. Ames] Length = 219 Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 133/221 (60%), Gaps = 2/221 (0%) Query: 1 MRFKDVFSIIGPAMVGPSSSHTXXXXXXXXXXXQVLGEPAREAEVTFFGSFAATYQGHGT 60 M+++ VF IIGP M+GPSSSHT Q+ ++ +GSFA TY+GHGT Sbjct: 1 MKYRSVFDIIGPVMIGPSSSHTAGAARMGQVACQLFRHEPERVSISLYGSFAKTYRGHGT 60 Query: 61 DRAIAGGLLNFATDDSRLPDSIELAAEAGMEISFGQGTGLFPHPNTVRLHLVGAQTGTEL 120 D A+ GG+L F TDD R+P+++E+A E +E+ F + PHPNT R+ L + E+ Sbjct: 61 DVALIGGILGFETDDLRIPEALEIAKERNIEVEFIEEDANAPHPNTARIRLYKGE--EEI 118 Query: 121 TLTGISIGGGNIEIVDIDGFGVKLTGMYPTVLIHHMDYLGVLASVTDVMRKGQFNIGHMS 180 + SIGGG IE+V+++GF ++L+G P +LI + D G +A+V ++ K + NI MS Sbjct: 119 EVVACSIGGGKIEVVELNGFDLQLSGTSPALLIVNNDRFGAIAAVASILAKQEINISTMS 178 Query: 181 LDRKNRSGAALTVLELDEAATPGLLHELRALSAVKSVKVVD 221 + RK + AL V+E DE ++ E++A + V +++ Sbjct: 179 VSRKEKGRRALMVIETDEILADEVIEEIKAQQNICQVTIME 219 >ref|NP_980502.1| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus cereus ATCC 10987] gb|AAS43110.1| L-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus cereus ATCC 10987] Length = 219 Score = 179 bits (453), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 133/221 (60%), Gaps = 2/221 (0%) Query: 1 MRFKDVFSIIGPAMVGPSSSHTXXXXXXXXXXXQVLGEPAREAEVTFFGSFAATYQGHGT 60 M+++ VF IIGP M+GPSSSHT Q+ ++ +GSFA TY+GHGT Sbjct: 1 MKYRSVFDIIGPVMIGPSSSHTAGAARMGQVARQLFRHEPERVSISLYGSFAKTYRGHGT 60 Query: 61 DRAIAGGLLNFATDDSRLPDSIELAAEAGMEISFGQGTGLFPHPNTVRLHLVGAQTGTEL 120 D A+ GG+L F TDD R+P+++E+A E +E+ F + PHPNT R+ L + E+ Sbjct: 61 DVALIGGILGFETDDLRIPEALEIAKEREIEVEFIEEDANAPHPNTARIRLYKGE--EEI 118 Query: 121 TLTGISIGGGNIEIVDIDGFGVKLTGMYPTVLIHHMDYLGVLASVTDVMRKGQFNIGHMS 180 + SIGGG IE+V+++GF ++L+G P +LI + D G +A+V ++ K + NI MS Sbjct: 119 EVVACSIGGGKIEVVELNGFDLQLSGTSPALLIVNNDRFGAIAAVASILAKHEINISTMS 178 Query: 181 LDRKNRSGAALTVLELDEAATPGLLHELRALSAVKSVKVVD 221 + RK + AL V+E DE ++ E++A + V +++ Sbjct: 179 VSRKEKGRRALMVIETDEILADEVIEEIKAQQNICQVTIME 219 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 325,142,708 Number of extensions: 12961309 Number of successful extensions: 29716 Number of sequences better than 1.0e-05: 44 Number of HSP's gapped: 29732 Number of HSP's successfully gapped: 44 Length of query: 236 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 114 Effective length of database: 425,995,500 Effective search space: 48563487000 Effective search space used: 48563487000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)