BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0162.0003.p (188 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00181053.1| hypothetical protein Mther095501 [Moorella th... 133 2e-30 ref|ZP_00061928.1| COG0062: Uncharacterized conserved protein [C... 124 1e-27 ref|NP_213941.1| hypothetical protein [Aquifex aeolicus] >gi|751... 105 5e-22 ref|ZP_00097898.1| COG0062: Uncharacterized conserved protein [D... 105 7e-22 ref|NP_952852.1| YjeF family protein [Geobacter sulfurreducens P... 103 2e-21 >ref|ZP_00181053.1| hypothetical protein Mther095501 [Moorella thermoacetica ATCC 39073] Length = 530 Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 103/180 (57%), Gaps = 2/180 (1%) Query: 9 DVTAVGPGLGRFAGDQEWLRALWEGIAAPMVIDADALNILADSDYSSWTSRCHPVILTPH 68 DV A+GPGL R + ++ L + P V+DADALN LA +D T P++LTPH Sbjct: 331 DVLAIGPGLSRDPATVDLVKELLPRVQVPAVVDADALNALA-TDTRVLTGDHGPLVLTPH 389 Query: 69 PGEMARLAGISTAEVQRDRIGLALAYAREHRVTLVLKGAHTVVATPEGEAYVNITXXXXX 128 PGEMARL G + A++Q DR+ +A YARE + L+LKGA TV+A P+G+ Y+N T Sbjct: 390 PGEMARLLGTTAAKIQEDRLEIAAKYAREWQAVLLLKGARTVIAWPDGQVYINPTGNPGM 449 Query: 129 XXXXXXDVLTXXXXXXXXXXXXXXXXXXFGVYLHGLAGERAARQRHDPSALIAGDIIEAL 188 DVLT G YLHG AG+ AARQR A++AGD+++ L Sbjct: 450 ATAGSGDVLTGIIAGLAGQGLKPGVAAALGAYLHGAAGDEAARQRGQ-RAMMAGDLLDFL 508 >ref|ZP_00061928.1| COG0062: Uncharacterized conserved protein [Clostridium thermocellum ATCC 27405] Length = 517 Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 100/180 (55%), Gaps = 2/180 (1%) Query: 9 DVTAVGPGLGRFAGDQEWLRALWEGIAAPMVIDADALNILADSDYSSWTSRCHPVILTPH 68 D A+GPGL ++ + ++ E PMVIDAD LN+++ + +R PV+LTPH Sbjct: 332 DAVAIGPGLSTKEDVEDVVFSVVENCKVPMVIDADGLNLISRNLPVLKKARA-PVVLTPH 390 Query: 69 PGEMARLAGISTAEVQRDRIGLALAYAREHRVTLVLKGAHTVVATPEGEAYVNITXXXXX 128 PGEMARL G+S E+Q+ R+G A ++ + VT VLKGA TVVA+P+G ++N T Sbjct: 391 PGEMARLTGLSIGEIQKRRVGTAREFSEKWGVTTVLKGAKTVVASPDGRVFINPTGNSGM 450 Query: 129 XXXXXXDVLTXXXXXXXXXXXXXXXXXXFGVYLHGLAGERAARQRHDPSALIAGDIIEAL 188 DVLT GVYLHGL G+R A + + L+AGD+ E + Sbjct: 451 STGGTGDVLTGIIASFIGQGLDPVDAAVAGVYLHGLCGDRVANVKGE-HGLVAGDLAEEI 509 >ref|NP_213941.1| hypothetical protein [Aquifex aeolicus] pir||F70418 conserved hypothetical protein aq_1365 - Aquifex aeolicus gb|AAC07340.1| hypothetical protein [Aquifex aeolicus VF5] Length = 499 Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 3/189 (1%) Query: 1 VLRLSTGRDVTAVGPGLGRFAGDQEWLRALWEGIAAPMVIDADALNILAD-SDYSSWTSR 59 +L L +G G+ R+ Q+ + +L E P++IDAD +N LAD DY+ R Sbjct: 303 ILELKDRFHALGIGMGMDRYEEGQDIVISLLEKWEKPILIDADGINNLADYGDYTPLKDR 362 Query: 60 CHPVILTPHPGEMARLAGISTAEVQRDRIGLALAYAREHRVTLVLKGAHTVVATPEGEAY 119 P +LTPH GE +RL G T + ++I +A ++ ++R LVLKGA TV++TP+G AY Sbjct: 363 EIPAVLTPHIGEFSRLTGYDTKTITYNQIDIAQEFSEKNRCYLVLKGARTVISTPDGRAY 422 Query: 120 VNITXXXXXXXXXXXDVLTXXXXXXXXXXXXXXXXXXFGVYLHGLAGERAARQRHDPSAL 179 + DVL GVYLHGLAG+ A ++ H S + Sbjct: 423 LFADGTPALAKGGTGDVLA-GILTALIAKMDTEEALKLGVYLHGLAGKVAEKKLHTES-V 480 Query: 180 IAGDIIEAL 188 A D+ E+L Sbjct: 481 KATDVTESL 489 >ref|ZP_00097898.1| COG0062: Uncharacterized conserved protein [Desulfitobacterium hafniense] Length = 548 Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 7/161 (4%) Query: 12 AVGPGLGRFAGDQEWLRALWE---GIAAPMVIDADALNILA-DSDYSSWTSRCHPVILTP 67 A+GPGLG+ + E L + E + P+++DADALN+LA + W P+ILTP Sbjct: 361 AIGPGLGQ---EPELLLVIEEVLRNLPLPVILDADALNVLAKEPGILGWRQGRGPLILTP 417 Query: 68 HPGEMARLAGISTAEVQRDRIGLALAYAREHRVTLVLKGAHTVVATPEGEAYVNITXXXX 127 HPGEMARL G +T EVQ +R+ LA++ A E +VLKGA T++A P+G A++N T Sbjct: 418 HPGEMARLCGCTTEEVQANRLELAISKAVEWESIIVLKGAITIIAAPDGRAFLNPTGNPG 477 Query: 128 XXXXXXXDVLTXXXXXXXXXXXXXXXXXXFGVYLHGLAGER 168 DVLT GVYLHG A ++ Sbjct: 478 LGTGGTGDVLTGSILAWLAQGVEPLAAACLGVYLHGKAADQ 518 >ref|NP_952852.1| YjeF family protein [Geobacter sulfurreducens PCA] gb|AAR35179.1| YjeF family protein [Geobacter sulfurreducens PCA] Length = 519 Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/182 (36%), Positives = 94/182 (51%), Gaps = 1/182 (0%) Query: 7 GRDVTAVGPGLGRFAGDQEWLRALWEGIAAPMVIDADALNILADSDYSSWTSRCHPVILT 66 GRD A+GPGL +R L I P+V+DAD LN +++ +R V+LT Sbjct: 325 GRDAIALGPGLSWQPATAALVRHLLADIMVPLVLDADGLNAISEQTELLKGARPDTVVLT 384 Query: 67 PHPGEMARLAGISTAEVQRDRIGLALAYAREHRVTLVLKGAHTVVATPEGEAYVNITXXX 126 PHPGEMARLAG +TA V+ DRIG+A +A + V L+LKGA +V+A P+G +N + Sbjct: 385 PHPGEMARLAGTTTAAVEADRIGVARDFAAQFGVYLILKGARSVIAAPDGRIALNGSGNP 444 Query: 127 XXXXXXXXDVLTXXXXXXXXXXXXXXXXXXFGVYLHGLAGERAARQRHDPSALIAGDIIE 186 DVLT G ++HG A + A + + + + A D+ E Sbjct: 445 GMASGGMGDVLTGVVTALLGQGYEPFDACILGAFVHGHAADLVAADKGE-TGMSALDVQE 503 Query: 187 AL 188 L Sbjct: 504 RL 505 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 231,446,256 Number of extensions: 7371492 Number of successful extensions: 16275 Number of sequences better than 1.0e-05: 210 Number of HSP's gapped: 16088 Number of HSP's successfully gapped: 210 Length of query: 188 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 70 Effective length of database: 436,855,896 Effective search space: 30579912720 Effective search space used: 30579912720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)