BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0159.0002.p
         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_693576.1| hypothetical protein OB2655 [Oceanobacillus ihe...   124   5e-28
ref|NP_240042.1| hypothetical protein [Buchnera aphidicola str. ...    51   7e-06

>ref|NP_693576.1| hypothetical protein OB2655 [Oceanobacillus iheyensis HTE831]
 dbj|BAC14611.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
          Length = 99

 Score =  124 bits (312), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 77/100 (77%), Gaps = 1/100 (1%)

Query: 1   MNVKITRNAAKVIKKTMELEGNSELKLRVAITHAHGDHAHYGLDLDTPKENDIVVSTDKE 60
           M VKI RNAAKV+K+ M LE  S+ K+R+ I+H HGDHAHYG+ LDTP E+DIVV TDK+
Sbjct: 1   MKVKINRNAAKVLKR-MLLEDGSDKKVRIYISHMHGDHAHYGMSLDTPGEHDIVVPTDKD 59

Query: 61  IDVILDPNQPLLDGVKIDYLYFPEEGFVITNPSKGNHGDH 100
           +D+ILD  +  LDG+ I Y +  +EGFVITNP+KG+H  H
Sbjct: 60  VDIILDCREEFLDGIWIQYFFVEDEGFVITNPTKGHHHHH 99


>ref|NP_240042.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 sp|P57307|Y211_BUCAI Hypothetical protein BU211
 pir||H84954 hypothetical protein yadR [imported] - Buchnera sp. (strain APS)
 dbj|BAB12928.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 114

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 3   VKITRNAAKVIKKTMELEGNSELKLRVAITHAHGDHAHYGLDLDTPKENDIVVSTDKEID 62
           ++ T  A K IK  +E+E N +LKLR+ I         Y    DT    D ++ T  E+ 
Sbjct: 9   LQFTEKAIKKIKNLIEIEKNHDLKLRIYINGGGCSGFQYQFIFDTSINEDDIIITQSEVS 68

Query: 63  VILDP-NQPLLDGVKIDYLYFPE-EGFVITNPSKGN 96
           +I+DP +   L G +IDYL   E   F++ NP+  N
Sbjct: 69  LIIDPISLQYLYGGQIDYLENLEGSKFIVYNPNAKN 104


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.314    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 161,327,805
Number of extensions: 6395869
Number of successful extensions: 12383
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 12405
Number of HSP's successfully gapped: 2
Length of query: 100
Length of database: 757,237,578
Length adjustment: 67
Effective length of query: 33
Effective length of database: 575,325,945
Effective search space: 18985756185
Effective search space used: 18985756185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)