BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0048.p (128 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_781726.1| general stress protein 20U [Clostridium tetani ... 162 2e-39 ref|NP_390943.1| alternate gene name: ytkB~stress- and starvatio... 157 8e-38 ref|NP_241884.1| stress- and starvation-induced gene controlled ... 156 1e-37 ref|NP_834714.1| Non-specific DNA-binding protein Dps / Iron-bin... 149 2e-35 ref|NP_653511.1| DPS, Dps protein family [Bacillus anthracis A20... 149 2e-35 >ref|NP_781726.1| general stress protein 20U [Clostridium tetani E88] gb|AAO35663.1| general stress protein 20U [Clostridium tetani E88] Length = 149 Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 71/128 (55%), Positives = 102/128 (79%) Query: 1 VLYVKIHNYHWYVKGEQFFSLHVKFEELYDDVTLKMDEVAERLLSIKGSPAATMKEYLEL 60 VLY+K+HN+HW+VKG+QFF+LH+KFEELY++ L +DE+AER LSI G+P ATMKE LE+ Sbjct: 21 VLYIKLHNFHWFVKGQQFFTLHLKFEELYNEAALHIDELAERQLSIGGNPVATMKECLEI 80 Query: 61 ATIQEATGKEDTRGMVQTLIEDFATVAEELTEGIELAEQVSDQPTADLFIKIRSDLEKNQ 120 ++I+EATG E MV T+I D+ T+ EL G+E+A++ +D+ T+D+ + I + LEK+ Sbjct: 81 SSIKEATGNEVAEDMVATIISDYNTIVSELKTGMEIAQKENDETTSDMLLAIHTALEKHV 140 Query: 121 WMLRSFLG 128 WML+SFLG Sbjct: 141 WMLKSFLG 148 >ref|NP_390943.1| alternate gene name: ytkB~stress- and starvation-induced gene controlled by sigma-B [Bacillus subtilis] sp|P80879|G20U_BACSU General stress protein 20U (GSP20U) (DPS protein homolog) pir||H69618 stress- and starvation-induced gene controlled by sigma-B dps - Bacillus subtilis gb|AAC00237.1| similarity to HI1349 from H. influenzae [Bacillus subtilis] emb|CAB15043.1| DNA-protecting protein [Bacillus subtilis subsp. subtilis str. 168] Length = 145 Score = 157 bits (396), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 67/128 (52%), Positives = 98/128 (76%) Query: 1 VLYVKIHNYHWYVKGEQFFSLHVKFEELYDDVTLKMDEVAERLLSIKGSPAATMKEYLEL 60 V+YVK+HNYHWYVKG+ FF+LH KFEELY++ +D++AERLL++ G P ATMKE LE Sbjct: 18 VMYVKLHNYHWYVKGKDFFTLHEKFEELYNETATYIDDLAERLLALNGKPIATMKESLET 77 Query: 61 ATIQEATGKEDTRGMVQTLIEDFATVAEELTEGIELAEQVSDQPTADLFIKIRSDLEKNQ 120 A+++EA G E MVQ++ +DF +AEEL G++LA++V D+ T D+ + I ++EK+ Sbjct: 78 ASVKEAAGNETAEQMVQSVYDDFTVIAEELKNGMDLADEVGDETTGDMLLAIHQNIEKHN 137 Query: 121 WMLRSFLG 128 WML+++LG Sbjct: 138 WMLKAYLG 145 >ref|NP_241884.1| stress- and starvation-induced gene controlled by sigma-B [Bacillus halodurans] pir||B83777 stress- and starvation-induced gene controlled by sigma-B dps [imported] - Bacillus halodurans (strain C-125) dbj|BAB04737.1| stress- and starvation-induced gene controlled by sigma-B [Bacillus halodurans] Length = 146 Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 70/127 (55%), Positives = 98/127 (77%) Query: 1 VLYVKIHNYHWYVKGEQFFSLHVKFEELYDDVTLKMDEVAERLLSIKGSPAATMKEYLEL 60 VL+VK+HNYHW+VKG QFF+LH KFEELY++ +DE+AERLL+++G PAATM+EYLE+ Sbjct: 19 VLFVKLHNYHWFVKGPQFFTLHEKFEELYNEAATHIDELAERLLALRGQPAATMREYLEI 78 Query: 61 ATIQEATGKEDTRGMVQTLIEDFATVAEELTEGIELAEQVSDQPTADLFIKIRSDLEKNQ 120 +++ EA G+E MV + +DF T+ +EL EG+E A+ + D+ TAD+ + I LEK+ Sbjct: 79 SSVTEARGEETADEMVAEISKDFDTLIDELKEGMEAADSLGDETTADMLLAIHQSLEKHN 138 Query: 121 WMLRSFL 127 WMLRSFL Sbjct: 139 WMLRSFL 145 >ref|NP_834714.1| Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase [Bacillus cereus ATCC 14579] gb|AAP11915.1| Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase [Bacillus cereus ATCC 14579] Length = 146 Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 68/128 (53%), Positives = 96/128 (75%) Query: 1 VLYVKIHNYHWYVKGEQFFSLHVKFEELYDDVTLKMDEVAERLLSIKGSPAATMKEYLEL 60 VL+ K+HN+HWYVKG QFF+LH KFEELY + +DE+AER+L+I G P ATMKEYLEL Sbjct: 18 VLFTKLHNFHWYVKGPQFFTLHEKFEELYTESATHIDEIAERILAIGGKPVATMKEYLEL 77 Query: 61 ATIQEATGKEDTRGMVQTLIEDFATVAEELTEGIELAEQVSDQPTADLFIKIRSDLEKNQ 120 ++IQEA E GMV+ +++D+ + EL +G+E+A+ D+ T+DL + I ++LEK+ Sbjct: 78 SSIQEAAYGETAEGMVEAIMKDYEMMLIELKKGMEIAQDSDDEMTSDLLLGIYTELEKHA 137 Query: 121 WMLRSFLG 128 WMLR+FL Sbjct: 138 WMLRAFLN 145 >ref|NP_653511.1| DPS, Dps protein family [Bacillus anthracis A2012] ref|NP_847469.1| general stress protein 20U [Bacillus anthracis str. Ames] gb|AAM18635.1| miniferritin Dlp1 [Bacillus anthracis] gb|AAP28955.1| general stress protein 20U [Bacillus anthracis str. Ames] Length = 146 Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 67/128 (52%), Positives = 96/128 (75%) Query: 1 VLYVKIHNYHWYVKGEQFFSLHVKFEELYDDVTLKMDEVAERLLSIKGSPAATMKEYLEL 60 VL+ K+HN+HWYVKG QFF+LH KFEELY + +DE+AER+L+I G P ATMKEYLE+ Sbjct: 18 VLFTKLHNFHWYVKGPQFFTLHEKFEELYTESATHIDEIAERILAIGGKPVATMKEYLEI 77 Query: 61 ATIQEATGKEDTRGMVQTLIEDFATVAEELTEGIELAEQVSDQPTADLFIKIRSDLEKNQ 120 ++IQEA E GMV+ +++D+ + EL +G+E+A+ D+ T+DL + I ++LEK+ Sbjct: 78 SSIQEAAYGETAEGMVEAIMKDYEMMLVELKKGMEIAQNSDDEMTSDLLLGIYTELEKHA 137 Query: 121 WMLRSFLG 128 WMLR+FL Sbjct: 138 WMLRAFLN 145 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 175,539,427 Number of extensions: 5986761 Number of successful extensions: 20767 Number of sequences better than 1.0e-05: 188 Number of HSP's gapped: 20714 Number of HSP's successfully gapped: 188 Length of query: 128 Length of database: 757,237,578 Length adjustment: 91 Effective length of query: 37 Effective length of database: 510,163,569 Effective search space: 18876052053 Effective search space used: 18876052053 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)