BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0047.p (260 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244338.1| ABC transporter (ATP-binding protein) [Bacillus... 417 e-115 ref|NP_653450.1| ABC_tran, ABC transporter [Bacillus anthracis A... 415 e-115 ref|NP_391150.1| similar to ABC transporter (ATP-binding protein... 415 e-115 ref|NP_834654.1| ABC transporter ATP-binding protein [Bacillus c... 414 e-115 ref|NP_981413.1| ABC transporter, ATP-binding protein [Bacillus ... 414 e-115 >ref|NP_244338.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||G84083 ABC transporter (ATP-binding protein) BH3471 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07190.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 263 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 203/261 (77%), Positives = 230/261 (88%), Gaps = 2/261 (0%) Query: 2 AADFVIEGLKATIEGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTEG 61 A IE L TIEGKEILK +L++ GGEIHAIMGPNGTGKSTLASA+MGHPKYE+T G Sbjct: 3 APSLKIENLHVTIEGKEILKDFSLEVNGGEIHAIMGPNGTGKSTLASAIMGHPKYEITSG 62 Query: 62 TAVLEGEDLLEMAVDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIRF 121 + L GED+LEM VDERA+AG+FLAMQYPSEISGVTNSDFLRSAIN++REEG+EISL++F Sbjct: 63 SVTLNGEDVLEMEVDERAKAGMFLAMQYPSEISGVTNSDFLRSAINAQREEGDEISLMKF 122 Query: 122 IRQMEAKMKELDMNPEFLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDIDA 181 IRQ++ KM LDM+ F HRYLNEGFSGGEKKRNEILQ+MML+PKI ILDEIDSGLDIDA Sbjct: 123 IRQLDEKMDLLDMDESFAHRYLNEGFSGGEKKRNEILQLMMLEPKIAILDEIDSGLDIDA 182 Query: 182 LKIVAEGVNSMRSPERGFLVITHYQRLLNYIKPDFVHVMMQGRIVKSGGPELAERLEAEG 241 LK+V++GVN+MR E G L+ITHYQRLLNYI PD VHVMMQGRIVKSGGPELA+RLEAEG Sbjct: 183 LKVVSQGVNAMRGSEFGCLIITHYQRLLNYITPDKVHVMMQGRIVKSGGPELAQRLEAEG 242 Query: 242 YEWVKEELGIEDETV--GQEA 260 Y+W+KEELGIEDE V GQEA Sbjct: 243 YDWIKEELGIEDERVSEGQEA 263 >ref|NP_653450.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_847399.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP28885.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 261 Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/259 (75%), Positives = 234/259 (90%) Query: 2 AADFVIEGLKATIEGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTEG 61 + ++ L +I+GKEILKG+NL++KGGEIHAIMGPNGTGKSTL+SA+MGHPKYEVTEG Sbjct: 3 GSTLTVKDLHVSIDGKEILKGVNLEVKGGEIHAIMGPNGTGKSTLSSAIMGHPKYEVTEG 62 Query: 62 TAVLEGEDLLEMAVDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIRF 121 + +++GED+LEM VDERA+AGLFLAMQYPSEISGVTN+DFLRSAIN+RREEG+EISL++F Sbjct: 63 SIIIDGEDVLEMEVDERAQAGLFLAMQYPSEISGVTNADFLRSAINARREEGDEISLMKF 122 Query: 122 IRQMEAKMKELDMNPEFLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDIDA 181 IR+++ M+ L+M+PE RYLNEGFSGGEKKRNEILQ+MM++PKI ILDEIDSGLDIDA Sbjct: 123 IRKLDKNMEFLEMDPEMAQRYLNEGFSGGEKKRNEILQLMMIEPKIAILDEIDSGLDIDA 182 Query: 182 LKIVAEGVNSMRSPERGFLVITHYQRLLNYIKPDFVHVMMQGRIVKSGGPELAERLEAEG 241 LK+V++G+N MR E G L+ITHYQRLLNYI PDFVHVMM GRIVKSGGPELA+RLEAEG Sbjct: 183 LKVVSKGINEMRGEEFGCLMITHYQRLLNYITPDFVHVMMNGRIVKSGGPELAQRLEAEG 242 Query: 242 YEWVKEELGIEDETVGQEA 260 Y+W+K+ELGIEDET QEA Sbjct: 243 YDWIKKELGIEDETTEQEA 261 >ref|NP_391150.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] sp|P80866|V296_BACSU Vegetative protein 296 (VEG296) pir||H70019 ABC transporter (ATP-binding protein) homolog yurY - Bacillus subtilis emb|CAB15260.1| yurY [Bacillus subtilis subsp. subtilis str. 168] Length = 261 Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/259 (75%), Positives = 233/259 (89%) Query: 2 AADFVIEGLKATIEGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTEG 61 A+ I+ L IEGKEILKG+NL++KGGE HA+MGPNGTGKSTL++A+MGHPKYEVT+G Sbjct: 3 ASTLTIKDLHVEIEGKEILKGVNLEIKGGEFHAVMGPNGTGKSTLSAAIMGHPKYEVTKG 62 Query: 62 TAVLEGEDLLEMAVDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIRF 121 + L+G+D+LEM VDERA+AGLFLAMQYPSEISGVTN+DFLRSAIN+RREEG+EISL++F Sbjct: 63 SITLDGKDVLEMEVDERAQAGLFLAMQYPSEISGVTNADFLRSAINARREEGDEISLMKF 122 Query: 122 IRQMEAKMKELDMNPEFLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDIDA 181 IR+M+ M+ L+M+PE RYLNEGFSGGEKKRNEILQ+MM++PKI ILDEIDSGLDIDA Sbjct: 123 IRKMDENMEFLEMDPEMAQRYLNEGFSGGEKKRNEILQLMMIEPKIAILDEIDSGLDIDA 182 Query: 182 LKIVAEGVNSMRSPERGFLVITHYQRLLNYIKPDFVHVMMQGRIVKSGGPELAERLEAEG 241 LK+V++G+N MRS G L+ITHYQRLLNYI PD VHVMMQGR+VKSGG ELA+RLEAEG Sbjct: 183 LKVVSKGINKMRSENFGCLMITHYQRLLNYITPDVVHVMMQGRVVKSGGAELAQRLEAEG 242 Query: 242 YEWVKEELGIEDETVGQEA 260 Y+W+K+ELGIEDETVGQEA Sbjct: 243 YDWIKQELGIEDETVGQEA 261 >ref|NP_834654.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP11855.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] Length = 261 Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/259 (75%), Positives = 233/259 (89%) Query: 2 AADFVIEGLKATIEGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTEG 61 + ++ L +I+GKEILKG+NL++KGGEIHAIMGPNGTGKSTL+SA+MGHPKYEVTEG Sbjct: 3 GSTLTVKDLHVSIDGKEILKGVNLEVKGGEIHAIMGPNGTGKSTLSSAIMGHPKYEVTEG 62 Query: 62 TAVLEGEDLLEMAVDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIRF 121 + +++GED+LEM VDERA+AGLFLAMQYPSEISGVTN+DFLRSAIN+RREEG+EISL++F Sbjct: 63 SIIIDGEDVLEMEVDERAQAGLFLAMQYPSEISGVTNADFLRSAINARREEGDEISLMKF 122 Query: 122 IRQMEAKMKELDMNPEFLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDIDA 181 IR ++ M+ L+M+PE RYLNEGFSGGEKKRNEILQ+MM++PKI ILDEIDSGLDIDA Sbjct: 123 IRTLDKNMEFLEMDPEMAQRYLNEGFSGGEKKRNEILQLMMIEPKIAILDEIDSGLDIDA 182 Query: 182 LKIVAEGVNSMRSPERGFLVITHYQRLLNYIKPDFVHVMMQGRIVKSGGPELAERLEAEG 241 LK+V++G+N MR E G L+ITHYQRLLNYI PDFVHVMM GRIVKSGGPELA+RLEAEG Sbjct: 183 LKVVSKGINEMRGEEFGCLMITHYQRLLNYITPDFVHVMMNGRIVKSGGPELAQRLEAEG 242 Query: 242 YEWVKEELGIEDETVGQEA 260 Y+W+K+ELGIEDET QEA Sbjct: 243 YDWIKKELGIEDETTEQEA 261 >ref|NP_981413.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS44021.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 261 Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust. Identities = 194/259 (74%), Positives = 234/259 (90%) Query: 2 AADFVIEGLKATIEGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTEG 61 + ++ L +I+GKEILKG+NL++KGGEIHAIMGPNGTGKSTL+SA+MGHPKYEVTEG Sbjct: 3 GSTLTVKDLHVSIDGKEILKGVNLEVKGGEIHAIMGPNGTGKSTLSSAIMGHPKYEVTEG 62 Query: 62 TAVLEGEDLLEMAVDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIRF 121 + +++GED+LEM VDERA+AGLFLAMQYPSEISGVTN+DFLRSAIN+RREEG+EISL++F Sbjct: 63 SIIIDGEDVLEMEVDERAQAGLFLAMQYPSEISGVTNADFLRSAINARREEGDEISLMKF 122 Query: 122 IRQMEAKMKELDMNPEFLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDIDA 181 IR+++ M+ L+M+PE RYLNEGFSGGEKKRNEILQ+MM++PKI ILDEIDSGLDIDA Sbjct: 123 IRKLDKNMEFLEMDPEMAQRYLNEGFSGGEKKRNEILQLMMIEPKIAILDEIDSGLDIDA 182 Query: 182 LKIVAEGVNSMRSPERGFLVITHYQRLLNYIKPDFVHVMMQGRIVKSGGPELAERLEAEG 241 LK+V++G+N MR + G L+ITHYQRLLNYI PDFVHVMM GRIVKSGGPELA+RLEAEG Sbjct: 183 LKVVSKGINEMRGEDFGCLMITHYQRLLNYITPDFVHVMMNGRIVKSGGPELAQRLEAEG 242 Query: 242 YEWVKEELGIEDETVGQEA 260 Y+W+K+ELGIEDET QEA Sbjct: 243 YDWIKKELGIEDETTEQEA 261 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 377,078,433 Number of extensions: 15652287 Number of successful extensions: 124540 Number of sequences better than 1.0e-05: 7948 Number of HSP's gapped: 122550 Number of HSP's successfully gapped: 8287 Length of query: 260 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 137 Effective length of database: 423,280,401 Effective search space: 57989414937 Effective search space used: 57989414937 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)