BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0044.p (135 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244335.1| nitrogen fixation protein [Bacillus halodurans]... 174 4e-43 ref|ZP_00182186.1| hypothetical protein Exigu251301 [Exiguobacte... 173 1e-42 ref|NP_693298.1| nitrogen fixation protein [Oceanobacillus iheye... 171 6e-42 ref|NP_371369.1| hypothetical protein [Staphylococcus aureus sub... 168 4e-41 ref|NP_391147.1| similar to NifU protein homolog [Bacillus subti... 164 7e-40 >ref|NP_244335.1| nitrogen fixation protein [Bacillus halodurans] pir||D84083 nitrogen fixation protein BH3468 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07187.1| nitrogen fixation protein [Bacillus halodurans] Length = 146 Score = 174 bits (442), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 82/132 (62%), Positives = 103/132 (78%), Gaps = 2/132 (1%) Query: 1 MDHYKNPRNRGSFADDALKIELNNPTCGDRITLQLKVEDGVVKDARYSGEGCSISMSSAS 60 MDHYKNPRNRG+ DD L + +NNPTCGDRI LQ+K++DG V +A++ GEGCSIS++SAS Sbjct: 15 MDHYKNPRNRGTIEDDTLSVNMNNPTCGDRIQLQMKLQDGKVVEAKFIGEGCSISLASAS 74 Query: 61 MMTEAVKGQTVEHALELADRFSSLMKGEAVDFEDYE--DIEALSGVNKFPARIKCATLAW 118 MMT+AVKG V+ AL L+D FS +M G D + ++ DIEAL GV KFPARIKCATLAW Sbjct: 75 MMTQAVKGLKVDEALALSDIFSDMMLGNDYDDKRFDLGDIEALQGVTKFPARIKCATLAW 134 Query: 119 NALRKGIDVEEE 130 AL KG++ +E Sbjct: 135 KALEKGLNEGQE 146 >ref|ZP_00182186.1| hypothetical protein Exigu251301 [Exiguobacterium sp. 255-15] Length = 144 Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 82/128 (64%), Positives = 104/128 (81%), Gaps = 3/128 (2%) Query: 1 MDHYKNPRNRGSFADDALKIELNNPTCGDRITLQLKVEDGVVKDARYSGEGCSISMSSAS 60 MDHYK PRNRG+ D + I++NNPTCGD I LQL +ED +VKDA++ GEGCSISM+SAS Sbjct: 15 MDHYKTPRNRGAI-DGGVTIDMNNPTCGDTIRLQLAIEDDIVKDAKFDGEGCSISMASAS 73 Query: 61 MMTEAVKGQTVEHALELADRFSSLMKGEAVDFEDYE--DIEALSGVNKFPARIKCATLAW 118 MMT+AVKG+TVE AL+LA+ FS +++G+ D E ++ D EALSGV KFPARIKCATLAW Sbjct: 74 MMTQAVKGKTVEEALQLANVFSEMVQGKDYDDEKFDLGDAEALSGVTKFPARIKCATLAW 133 Query: 119 NALRKGID 126 AL +G++ Sbjct: 134 KALERGVE 141 >ref|NP_693298.1| nitrogen fixation protein [Oceanobacillus iheyensis HTE831] dbj|BAC14333.1| nitrogen fixation protein [Oceanobacillus iheyensis HTE831] Length = 142 Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 85/125 (68%), Positives = 104/125 (83%) Query: 1 MDHYKNPRNRGSFADDALKIELNNPTCGDRITLQLKVEDGVVKDARYSGEGCSISMSSAS 60 MDHYKNPRNRGS D++ +++NNPTCGDRI LQL VEDG+V+DA+Y GEGCSISMSSAS Sbjct: 15 MDHYKNPRNRGSLEGDSVTVDMNNPTCGDRIQLQLHVEDGIVQDAKYEGEGCSISMSSAS 74 Query: 61 MMTEAVKGQTVEHALELADRFSSLMKGEAVDFEDYEDIEALSGVNKFPARIKCATLAWNA 120 MMT+A+KG+ +E ALE++ FS +M G VD E+ DIEAL GV+KFPARIKCATLAW A Sbjct: 75 MMTQAIKGKKIEEALEMSQTFSDMMLGNDVDTEEMGDIEALQGVSKFPARIKCATLAWKA 134 Query: 121 LRKGI 125 + KG+ Sbjct: 135 MEKGV 139 >ref|NP_371369.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374038.1| hypothetical protein, similar to nitrogen fixation protein NifU [Staphylococcus aureus subsp. aureus N315] ref|NP_645615.1| ORFID:MW0798~hypothetical protein, similar to nitrogen fixation protein NifU [Staphylococcus aureus subsp. aureus MW2] pir||E89857 hypothetical protein SA0777 [imported] - Staphylococcus aureus (strain N315) dbj|BAB42016.1| SA0777 [Staphylococcus aureus subsp. aureus N315] dbj|BAB57007.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] dbj|BAB94663.1| MW0798 [Staphylococcus aureus subsp. aureus MW2] Length = 154 Score = 168 bits (425), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 75/130 (57%), Positives = 101/130 (77%), Gaps = 1/130 (0%) Query: 1 MDHYKNPRNRGSFADDALKIELNNPTCGDRITLQLKVEDGVVKDARYSGEGCSISMSSAS 60 MDHYKNPRN+G + ++ +++NNPTCGDRI L +EDG++KDA++ GEGCSISM+SAS Sbjct: 15 MDHYKNPRNKGVLDNGSMTVDMNNPTCGDRIRLTFDIEDGIIKDAKFEGEGCSISMASAS 74 Query: 61 MMTEAVKGQTVEHALELADRFSSLMKGE-AVDFEDYEDIEALSGVNKFPARIKCATLAWN 119 MMT+AVKG ++ A++++ F+ +M GE V E+ DIEAL GV++FPARIKCATLAW Sbjct: 75 MMTQAVKGHSLGEAMQMSQEFTKMMLGEDYVITEEMGDIEALQGVSQFPARIKCATLAWK 134 Query: 120 ALRKGIDVEE 129 AL KG +E Sbjct: 135 ALEKGTVAKE 144 >ref|NP_391147.1| similar to NifU protein homolog [Bacillus subtilis] sp|O32163|NIFU_BACSU NifU-like protein pir||E70019 iron-sulfur cofactor synthesis protein nifU homolog yurV [similarity] - Bacillus subtilis emb|CAB15257.1| yurV [Bacillus subtilis subsp. subtilis str. 168] Length = 147 Score = 164 bits (414), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 76/130 (58%), Positives = 103/130 (79%), Gaps = 2/130 (1%) Query: 1 MDHYKNPRNRGSFADDALKIELNNPTCGDRITLQLKVEDGVVKDARYSGEGCSISMSSAS 60 MDHYKNPRN+G +D++ +++NNPTCGDRI L +K++ +V+DA++ GEGCSISM+SAS Sbjct: 16 MDHYKNPRNKGVL-NDSIVVDMNNPTCGDRIRLTMKLDGDIVEDAKFEGEGCSISMASAS 74 Query: 61 MMTEAVKGQTVEHALELADRFSSLMKGEAVDFE-DYEDIEALSGVNKFPARIKCATLAWN 119 MMT+A+KG+ +E AL ++ FS +M+G+ D D DIEAL GV+KFPARIKCATL+W Sbjct: 75 MMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPARIKCATLSWK 134 Query: 120 ALRKGIDVEE 129 AL KG+ EE Sbjct: 135 ALEKGVAKEE 144 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.130 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 192,514,567 Number of extensions: 6546651 Number of successful extensions: 14216 Number of sequences better than 1.0e-05: 442 Number of HSP's gapped: 13595 Number of HSP's successfully gapped: 442 Length of query: 135 Length of database: 757,237,578 Length adjustment: 97 Effective length of query: 38 Effective length of database: 493,872,975 Effective search space: 18767173050 Effective search space used: 18767173050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 120 (50.8 bits)