BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0157.0031.p
         (50 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_630462.1| putative integral membrane protein [Streptomyce...    60   1e-08
ref|ZP_00106375.1| COG4705: Uncharacterized membrane-anchored pr...    53   3e-06
ref|NP_105324.1| putative integral membrane protein [Mesorhizobi...    51   1e-05

>ref|NP_630462.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
 pir||T34982 probable integral membrane protein - Streptomyces coelicolor
 emb|CAA20159.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 279

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 1   LGASLGDYLSQPRSEGGLQLGTTGTSIIFIAIILGLVLYLTKTKKD 46
           LGAS+GDYLSQP  +GGL  GT  TS +F+A+ILGLV+YL  ++KD
Sbjct: 222 LGASIGDYLSQPTGDGGLGFGTVVTSGLFLAVILGLVVYLAVSRKD 267


>ref|ZP_00106375.1| COG4705: Uncharacterized membrane-anchored protein conserved in
           bacteria [Nostoc punctiforme]
          Length = 147

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 1   LGASLGDYLSQPRSEGGLQLGTTGTSIIFIAIILGLVLYLTKTKKD 46
           LGAS+GD LSQP   GGL LGT  TS++F++II+ LV+YL+  +K 
Sbjct: 96  LGASVGDLLSQPAKNGGLGLGTVETSMLFLSIIISLVIYLSLKQKQ 141


>ref|NP_105324.1| putative integral membrane protein [Mesorhizobium loti MAFF303099]
 dbj|BAB51110.1| putative integral membrane protein [Mesorhizobium loti]
          Length = 309

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 1   LGASLGDYLSQPRSEGGLQLGTTGTSIIFIAIILGLVLYLT--KTKKD 46
           LGAS GD LSQP   GGL  GTT TS+IF+  I  LVLY+T  +T  D
Sbjct: 253 LGASFGDLLSQPLEYGGLGFGTTFTSLIFLGCIAALVLYMTLKRTADD 300


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.142    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 67,705,668
Number of extensions: 1743161
Number of successful extensions: 6176
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6176
Number of HSP's successfully gapped: 5
Length of query: 50
Length of database: 757,237,578
Length adjustment: 23
Effective length of query: 27
Effective length of database: 694,790,301
Effective search space: 18759338127
Effective search space used: 18759338127
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)