BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0026.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_622009.1| predicted permease [Thermoanaerobacter tengcong... 210 2e-53 ref|NP_389106.1| similar to hypothetical proteins [Bacillus subt... 208 7e-53 ref|NP_691368.1| hypothetical protein OB0447 [Oceanobacillus ihe... 190 3e-47 ref|ZP_00183988.1| hypothetical protein Exigu062601 [Exiguobacte... 166 3e-40 ref|NP_806089.1| putative membrane protein [Salmonella enterica ... 166 4e-40 >ref|NP_622009.1| predicted permease [Thermoanaerobacter tengcongensis] gb|AAM23613.1| predicted permease [Thermoanaerobacter tengcongensis] Length = 250 Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 101/247 (40%), Positives = 154/247 (62%) Query: 1 MTLTALSFTLLFVMGTMLVSIWQKLGLEKDIAVGTIRSAVQLLAVGYVLQFIFQAEHXXX 60 M+ ++L F V + +S +QKLG+EK+I +GT R+ QL+ VGY+L +IF A + Sbjct: 1 MSTSSLIFASSLVFVAIFISYYQKLGIEKEIIIGTARAVFQLMVVGYILHYIFSANNALF 60 Query: 61 XXXXXXXXXXXASWNAAKRGKGLPGLVWRIAVAISAMEXXXXXXXXXXXXXKANPQYIIP 120 A NA+KRGK +PG+ + + +I+ K PQ +IP Sbjct: 61 TLAMVAVMILVAGHNASKRGKEIPGIFYYVTFSIAVSAAVTLSLLILFGNIKFEPQQVIP 120 Query: 121 ISGMTIGSAMVVSGLFINHLKHEMQQNKGEIETLLSLGATAQQAMQKVRARAVKFSMIPT 180 +SGM IG++MV SGL ++ LK E++ + EIE L+LGAT++QA QKV ++K M+PT Sbjct: 121 VSGMIIGNSMVASGLSVSRLKDEIKNRQEEIEAYLALGATSRQAAQKVIKMSIKTGMMPT 180 Query: 181 IDGMKTVGLVQLPGMMTGMIIAGADPVIAVRYQILIVFSFTASAAVTSMLLSVLIYRLFF 240 +D MKT+G+VQLPGMMTG+I+ G DP+ AV+YQI++ F ++ A++ ++ L YR FF Sbjct: 181 VDSMKTLGIVQLPGMMTGLILGGVDPITAVKYQIMVTFMLASTVAISCFTVTFLTYRTFF 240 Query: 241 TADLRLK 247 T +L+ Sbjct: 241 TKQHQLR 247 >ref|NP_389106.1| similar to hypothetical proteins [Bacillus subtilis] pir||E69851 conserved hypothetical protein yjkA - Bacillus subtilis gb|AAC46320.1| unknown [Bacillus subtilis] emb|CAB13081.1| yjkA [Bacillus subtilis subsp. subtilis str. 168] Length = 250 Score = 208 bits (530), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 112/247 (45%), Positives = 157/247 (63%) Query: 1 MTLTALSFTLLFVMGTMLVSIWQKLGLEKDIAVGTIRSAVQLLAVGYVLQFIFQAEHXXX 60 M +LS T++FV+ + +S K G+EKD+ + TIR+AVQLL +GYVL IF+ +H Sbjct: 1 MDYLSLSLTMIFVLIALFLSKSFKAGVEKDMIIATIRAAVQLLIIGYVLSLIFRGDHPVF 60 Query: 61 XXXXXXXXXXXASWNAAKRGKGLPGLVWRIAVAISAMEXXXXXXXXXXXXXKANPQYIIP 120 A+ N KR K G WR+ A++ +E +Y+IP Sbjct: 61 ILLMVLLMLAVAAQNVIKRKKNTIGSFWRVFAALAIVEIVTQGILLSLHIIPLTARYVIP 120 Query: 121 ISGMTIGSAMVVSGLFINHLKHEMQQNKGEIETLLSLGATAQQAMQKVRARAVKFSMIPT 180 ISGM IG++MV+S LF+N L E+ K EI+ +LSLG T +Q++Q++ A+K SMIPT Sbjct: 121 ISGMVIGNSMVLSSLFLNRLNSEVGVRKEEIQLILSLGGTPKQSIQRILTSAMKMSMIPT 180 Query: 181 IDGMKTVGLVQLPGMMTGMIIAGADPVIAVRYQILIVFSFTASAAVTSMLLSVLIYRLFF 240 ++ KT+GLVQLPGMMTG I+AGADP+ AVR+Q+LIVF+ ASAA+T ++LSVL Y F Sbjct: 181 LESQKTLGLVQLPGMMTGQILAGADPIQAVRFQLLIVFTTMASAALTCVILSVLTYPSLF 240 Query: 241 TADLRLK 247 T +LK Sbjct: 241 TVHQQLK 247 >ref|NP_691368.1| hypothetical protein OB0447 [Oceanobacillus iheyensis HTE831] dbj|BAC12403.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 255 Score = 190 bits (482), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 105/246 (42%), Positives = 153/246 (62%) Query: 1 MTLTALSFTLLFVMGTMLVSIWQKLGLEKDIAVGTIRSAVQLLAVGYVLQFIFQAEHXXX 60 M++TALS +L+FV+ +++S LGLEKD V TIRS +QL AVGYVL +F+A++ Sbjct: 1 MSITALSLSLIFVLIPLVLSKSLNLGLEKDTIVATIRSIIQLFAVGYVLALVFEADNYIY 60 Query: 61 XXXXXXXXXXXASWNAAKRGKGLPGLVWRIAVAISAMEXXXXXXXXXXXXXKANPQYIIP 120 A+ NA K+G + G+ W++ +E A QYIIP Sbjct: 61 IILMVVLMITAATHNARKKGASIKGITWKLVTTFILIEVITQSILLGFQITPATAQYIIP 120 Query: 121 ISGMTIGSAMVVSGLFINHLKHEMQQNKGEIETLLSLGATAQQAMQKVRARAVKFSMIPT 180 ISGM +G++MV+S LF+N E++ + E E +LSLG T +QA+ ++K S+IPT Sbjct: 121 ISGMMVGNSMVLSILFLNRFTSEIETRENETELILSLGGTPRQAIHTSLIHSIKASLIPT 180 Query: 181 IDGMKTVGLVQLPGMMTGMIIAGADPVIAVRYQILIVFSFTASAAVTSMLLSVLIYRLFF 240 I+ KT+GLVQLPGMM+G IIAGADP+ AV++Q+LI+F +AAVTS++L L Y F Sbjct: 181 IESQKTIGLVQLPGMMSGQIIAGADPIQAVQFQLLILFLLLTTAAVTSIMLGFLSYPTLF 240 Query: 241 TADLRL 246 +++ Sbjct: 241 NERMQM 246 >ref|ZP_00183988.1| hypothetical protein Exigu062601 [Exiguobacterium sp. 255-15] Length = 257 Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 146/241 (60%) Query: 1 MTLTALSFTLLFVMGTMLVSIWQKLGLEKDIAVGTIRSAVQLLAVGYVLQFIFQAEHXXX 60 M+ L+ +L+F+ ++++ KLGLEKDI + T+RS +QLL +GY+L F+F+++ Sbjct: 1 MSYVQLATSLIFIAIPLILAFTLKLGLEKDILIATVRSIIQLLIIGYILTFVFESDSPIY 60 Query: 61 XXXXXXXXXXXASWNAAKRGKGLPGLVWRIAVAISAMEXXXXXXXXXXXXXKANPQYIIP 120 A+ N ++G G+PG+ W + + ++E Q +IP Sbjct: 61 ILLMILLMIGAATLNVIRKGDGIPGIQWIVLATLISVEVLTMGLMLGLNIIPFEAQQVIP 120 Query: 121 ISGMTIGSAMVVSGLFINHLKHEMQQNKGEIETLLSLGATAQQAMQKVRARAVKFSMIPT 180 ISGM IG+ M++S LF+N K E++++ IE +LSLG + A+ A++ SMIPT Sbjct: 121 ISGMVIGNCMILSLLFLNKFKDEVERSDEVIELILSLGGDTKTAIDTSLKSAIRTSMIPT 180 Query: 181 IDGMKTVGLVQLPGMMTGMIIAGADPVIAVRYQILIVFSFTASAAVTSMLLSVLIYRLFF 240 I+ KT+GLVQLPGMM+G+II GA+P+ AV YQ+LI+F +AA +++L+ + YR F Sbjct: 181 IEAQKTMGLVQLPGMMSGLIIGGANPMEAVLYQLLILFLLLTTAATSAVLVGYMSYRKLF 240 Query: 241 T 241 Sbjct: 241 N 241 >ref|NP_806089.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] gb|AAO69949.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] Length = 259 Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 139/246 (56%) Query: 1 MTLTALSFTLLFVMGTMLVSIWQKLGLEKDIAVGTIRSAVQLLAVGYVLQFIFQAEHXXX 60 +T T+L+ ++L V+ ML+S +KL LEKDI R+ +QL+ VGYVL++IF H Sbjct: 6 ITNTSLALSMLLVVVAMLISHEEKLALEKDILWSVCRAVIQLIIVGYVLKYIFGVNHAAL 65 Query: 61 XXXXXXXXXXXASWNAAKRGKGLPGLVWRIAVAISAMEXXXXXXXXXXXXXKANPQYIIP 120 A+WNA KR K + +AI+ + P +IP Sbjct: 66 TLLMVLFICFNAAWNAQKRSKYIDKAFLSSFIAITVGAGLTLTVLVLTGSIEFAPMQVIP 125 Query: 121 ISGMTIGSAMVVSGLFINHLKHEMQQNKGEIETLLSLGATAQQAMQKVRARAVKFSMIPT 180 I+GM G+AMV GL N L + +I+ LSLGAT + A + +++ S+IPT Sbjct: 126 IAGMVAGNAMVAVGLCYNQLGLRFHSEQQQIQEKLSLGATPKMASAGLIRDSIRASLIPT 185 Query: 181 IDGMKTVGLVQLPGMMTGMIIAGADPVIAVRYQILIVFSFTASAAVTSMLLSVLIYRLFF 240 ID KTVGLV LPGMM+G+I AG DPV A++YQI++ F ++A++++++ L YR F+ Sbjct: 186 IDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLTYRKFY 245 Query: 241 TADLRL 246 + +L Sbjct: 246 NSRHQL 251 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 274,236,011 Number of extensions: 8050229 Number of successful extensions: 29986 Number of sequences better than 1.0e-05: 64 Number of HSP's gapped: 29941 Number of HSP's successfully gapped: 65 Length of query: 253 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 130 Effective length of database: 423,280,401 Effective search space: 55026452130 Effective search space used: 55026452130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 124 (52.4 bits)