BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0010.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_465926.1| similar to B. subtilis YunD protein [Listeria m... 140 2e-32 ref|NP_471832.1| similar to B. subtilis YunD protein [Listeria i... 139 3e-32 ref|NP_244320.1| BH3453~unknown conserved protein [Bacillus halo... 137 1e-31 ref|NP_693294.1| hypothetical protein OB2373 [Oceanobacillus ihe... 131 8e-30 ref|NP_645623.1| conserved hypothetical protein [Staphylococcus ... 130 2e-29 >ref|NP_465926.1| similar to B. subtilis YunD protein [Listeria monocytogenes EGD-e] pir||AC1375 B. subtilis YunD protein homolog lmo2403 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00481.1| lmo2403 [Listeria monocytogenes] Length = 463 Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/184 (41%), Positives = 100/184 (54%), Gaps = 3/184 (1%) Query: 5 LQRLTLIHTNDIHSHFEMMSPIXXXXXXXXXXXGEE--PVLLLDIGDHMDRAAVETEGTM 62 ++ LTL HTND+HSH E I +E L DIGD +DR TEGT Sbjct: 2 MKHLTLWHTNDVHSHLEHWPRIFNFLKEKRTAADKENQSALFFDIGDFLDRVHPLTEGTN 61 Query: 63 GQANIDMINLTGYDAITIGNNEGLTFTREILSALYAGLQCPVVCCNILESAT-GEAPGWM 121 G AN D++N YD +T GNNEG T E L LY PVVCCN + E P W+ Sbjct: 62 GLANTDLLNQLPYDVVTFGNNEGTTLAHEDLDKLYEHAVFPVVCCNFYTNKECTEQPDWV 121 Query: 122 KRHIILEKDGIKIGITGATAAFASFYGLLGWEALDPEEALREQCELLAPQVDLLIILSHL 181 K + E + +KI I GATA F +Y +GW +P ++++Q L D++I+LSHL Sbjct: 122 KSIVYKEIEQVKIAIIGATAPFRDYYEEMGWGIEEPISSIKKQVAGLDEDTDVVILLSHL 181 Query: 182 GLPA 185 GLP+ Sbjct: 182 GLPS 185 >ref|NP_471832.1| similar to B. subtilis YunD protein [Listeria innocua] pir||AI1744 B. subtilis YunD protein homolog lin2502 [imported] - Listeria innocua (strain Clip11262) emb|CAC97729.1| lin2502 [Listeria innocua] Length = 463 Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/183 (42%), Positives = 99/183 (54%), Gaps = 3/183 (1%) Query: 5 LQRLTLIHTNDIHSHFEMMSPIXXXXXXXXXXXGEE--PVLLLDIGDHMDRAAVETEGTM 62 ++ LTL HTND+HSH E I +E L DIGD +DR TEGT Sbjct: 2 MKHLTLWHTNDVHSHLEHWPRIFNFLKEKRTAADKEYKAALFFDIGDFLDRVHPLTEGTN 61 Query: 63 GQANIDMINLTGYDAITIGNNEGLTFTREILSALYAGLQCPVVCCNIL-ESATGEAPGWM 121 G AN D++N YDA+T GNNEG T E L LY PVVCCN + E P W+ Sbjct: 62 GLANTDLLNQLPYDAVTFGNNEGTTLAHEDLDNLYEHAAFPVVCCNFYADKECTEQPDWV 121 Query: 122 KRHIILEKDGIKIGITGATAAFASFYGLLGWEALDPEEALREQCELLAPQVDLLIILSHL 181 K + E + +KI I GATA F +Y +GW +P A+++Q L ++I+LSHL Sbjct: 122 KSIVYKEIEQVKIAIIGATAPFREYYEEMGWGVEEPISAIKKQIAGLDADTAVVILLSHL 181 Query: 182 GLP 184 GLP Sbjct: 182 GLP 184 >ref|NP_244320.1| BH3453~unknown conserved protein [Bacillus halodurans] pir||E84081 hypothetical protein BH3453 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07172.1| BH3453~unknown conserved protein [Bacillus halodurans] Length = 462 Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 102/177 (57%), Gaps = 4/177 (2%) Query: 8 LTLIHTNDIHSHFEMMSPIXXXXXXXXXXXGEEPVLLLDIGDHMDRAAVETEGTMGQANI 67 T+ H ND+HSHF I P LLLD+GDH DR+ V TE TMG+AN+ Sbjct: 6 FTIYHMNDLHSHFTYWPQIVSYMKKEREQTA--PYLLLDLGDHADRSHVITEATMGKANV 63 Query: 68 DMINLTGYDAITIGNNEGLTFTREILSALYAGLQCPVVCCNILESATGEAPGWMKRHII- 126 ++N G D TIGNNEG+TF++E L+ LYA PVV N+ + G+ P W +++ Sbjct: 64 ALLNELGIDYATIGNNEGITFSKEALNELYAQASFPVVVANLFDE-DGKRPSWATPYVLH 122 Query: 127 LEKDGIKIGITGATAAFASFYGLLGWEALDPEEALREQCELLAPQVDLLIILSHLGL 183 + + IG+ G TA F FY LGW+ EE L + E + Q D++++LSHLGL Sbjct: 123 TVSEQLTIGMIGVTAPFTPFYRELGWDVRRHEEVLPQLLEDVRKQADVVVLLSHLGL 179 >ref|NP_693294.1| hypothetical protein OB2373 [Oceanobacillus iheyensis HTE831] dbj|BAC14329.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 467 Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 72/181 (39%), Positives = 100/181 (55%), Gaps = 4/181 (2%) Query: 6 QRLTLIHTNDIHSHFEMMSPIXXX--XXXXXXXXGEEPVLLLDIGDHMDRAAVETEGTMG 63 ++LT TND+HSHF + + +DIGDH+DR+ TE + G Sbjct: 4 EQLTFYFTNDLHSHFLQWPKVASYLLHKQEIHKANSDTYWTVDIGDHVDRSHPITEASRG 63 Query: 64 QANIDMINLTGYDAITIGNNEGLTFTREILSALYAGLQCPVVCCNILESATGEAPGWMKR 123 +ANID++N YD +T+GNNEG+T + + L LY VVC N LES G P W+KR Sbjct: 64 KANIDLLNQLNYDVVTLGNNEGITLSHDELYHLYDHANFSVVCSN-LESLDGPLPAWLKR 122 Query: 124 HIILEK-DGIKIGITGATAAFASFYGLLGWEALDPEEALREQCELLAPQVDLLIILSHLG 182 I E GIK+G G TA F +FY LL W + + L + L Q D++++LSHLG Sbjct: 123 TEIKESASGIKVGFLGLTAPFNAFYELLDWHIDNEFDVLDQYIHELEKQTDIIVLLSHLG 182 Query: 183 L 183 + Sbjct: 183 I 183 >ref|NP_645623.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] dbj|BAB94671.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] Length = 439 Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 99/177 (55%), Gaps = 2/177 (1%) Query: 7 RLTLIHTNDIHSHFEMMSPIXXXXXXXXXXXGEEPVLLLDIGDHMDRAAVETEGTMGQAN 66 RLT+ HTNDIHSH I P L +D+GDH+D +A TE T+G+ N Sbjct: 2 RLTIYHTNDIHSHLHEYERIKAYMAEHRPRLNH-PSLYVDLGDHVDLSAPITEATLGKKN 60 Query: 67 IDMINLTGYDAITIGNNEGLTFTREILSALYAGLQCPVVCCNILESATGEAPGWMKRHII 126 + ++N D TIGNNEG+T + E L+ LY + V C N+++ +G P + I Sbjct: 61 VALLNEAKCDVATIGNNEGMTISHEALNHLYDEAKFIVTCSNVIDE-SGHLPNNIVSSYI 119 Query: 127 LEKDGIKIGITGATAAFASFYGLLGWEALDPEEALREQCELLAPQVDLLIILSHLGL 183 + DG+KI ATA F FY L W DP E+++E+ EL + D+LI+LSH G+ Sbjct: 120 KDIDGVKILFVAATAPFTPFYRALNWIVTDPLESIKEEIELQGGKFDVLIVLSHCGI 176 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.139 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 289,905,484 Number of extensions: 10796306 Number of successful extensions: 20687 Number of sequences better than 1.0e-05: 63 Number of HSP's gapped: 20691 Number of HSP's successfully gapped: 63 Length of query: 213 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 93 Effective length of database: 431,425,698 Effective search space: 40122589914 Effective search space used: 40122589914 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 123 (52.0 bits)