BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0002.p (172 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAD09628.1| unknown [environmental sequence] 87 2e-16 ref|NP_244548.1| sugar ABC transporter (permease) [Bacillus halo... 86 4e-16 ref|ZP_00110366.1| COG1175: ABC-type sugar transport systems, pe... 85 6e-16 ref|NP_440703.1| lactose transport system permease protein; LacF... 85 7e-16 sp|P40979|YOR1_CALSR Hypothetical protein in xylR 5'region (ORF1... 85 7e-16 >gb|EAD09628.1| unknown [environmental sequence] Length = 129 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 7/110 (6%) Query: 3 WGAVGNYILLFLAGLQGIPEDLYEAASIDGASEARKLWSITIPLLGPVMQMIIMLAITIS 62 W VG LL AGLQ IP +YEA +DGASE R W IT+PLL P++ +++++ + S Sbjct: 1 WRHVGYTALLIFAGLQSIPNTVYEAGKMDGASEWRMFWRITVPLLRPILALVLIMTMIGS 60 Query: 63 LKGYESIMVLTQGGPYSKTEVMYLYLFKLLFPISPEVQTQQQLGYGSAVG 112 + ++++ V TQGGP + T V+ Y++ + F + Q GY SA+ Sbjct: 61 FQVFDTVSVATQGGPVNATRVLQYYIYDMAFG-------RFQFGYASAMA 103 >ref|NP_244548.1| sugar ABC transporter (permease) [Bacillus halodurans] pir||A84110 sugar ABC transporter (permease) BH3681 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07400.1| sugar ABC transporter (permease) [Bacillus halodurans] Length = 293 Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 7/113 (6%) Query: 1 LIWGAVGNYILLFLAGLQGIPEDLYEAASIDGASEARKLWSITIPLLGPVMQMIIMLAIT 60 ++W G YIL++ A L+ +P +L EAA IDGA+ + + + +PL+ V+++ ++LA+ Sbjct: 162 ILWQYAGFYILIYYAALRNVPNELVEAAQIDGATPLQIAYKVKLPLIAGVIKVTVVLAVI 221 Query: 61 ISLKGYESIMVLTQGGPYSKTEVMYLYLFKLLFPISPEVQTQQQLGYGSAVGF 113 SLK ++ I V+T GGP +EVM Y++KL F GYGSA+GF Sbjct: 222 GSLKYFDLIYVMTDGGPNGASEVMASYMYKLAF-------RTNDFGYGSAIGF 267 >ref|ZP_00110366.1| COG1175: ABC-type sugar transport systems, permease components [Nostoc punctiforme] Length = 309 Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 63/92 (68%) Query: 2 IWGAVGNYILLFLAGLQGIPEDLYEAASIDGASEARKLWSITIPLLGPVMQMIIMLAITI 61 +W +G Y++++LAGLQ IP D+YEAA+IDG+ K W ITIPL+ P + ++ +++ Sbjct: 179 VWKGLGYYMVIYLAGLQSIPADVYEAAAIDGSDGISKHWDITIPLMKPYLALVAVISAIS 238 Query: 62 SLKGYESIMVLTQGGPYSKTEVMYLYLFKLLF 93 + K +E + ++TQGGP S ++ + YL++ F Sbjct: 239 ATKVFEEVYIMTQGGPLSSSKTIVYYLYEQAF 270 >ref|NP_440703.1| lactose transport system permease protein; LacF [Synechocystis sp. PCC 6803] pir||S77536 lactose transport system permease protein lacF - Synechocystis sp. (strain PCC 6803) dbj|BAA17383.1| lactose transport system permease protein; LacF [Synechocystis sp. PCC 6803] Length = 298 Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 71/112 (63%), Gaps = 7/112 (6%) Query: 2 IWGAVGNYILLFLAGLQGIPEDLYEAASIDGASEARKLWSITIPLLGPVMQMIIMLAITI 61 +W +G Y++++LAGLQ IP++LYEA +IDGA R+ W ITIPL+ P ++ +L+ Sbjct: 170 VWKGLGYYMVIYLAGLQAIPQELYEAGAIDGADGWRQHWDITIPLMRPYCFLVGVLSSIS 229 Query: 62 SLKGYESIMVLTQGGPYSKTEVMYLYLFKLLFPISPEVQTQQQLGYGSAVGF 113 +LK +E + ++TQGGP + ++ + Y+++ F ++ Y SA+G Sbjct: 230 ALKVFEEVYIMTQGGPLNASKTVVYYVYERAF-------QDLEMNYASAIGL 274 >sp|P40979|YOR1_CALSR Hypothetical protein in xylR 5'region (ORF1) pir||S41785 probable sugar transport protein 1 - thermophilic bacterium RT8.B4 (fragment) gb|AAB42041.1| putative membrane bound sugar transport protein; ORF1; putative [Caldicellulosiruptor sp. Rt8B.4] Length = 140 Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 7/112 (6%) Query: 3 WGAVGNYILLFLAGLQGIPEDLYEAASIDGASEARKLWSITIPLLGPVMQMIIMLAITIS 62 W + Y++ F+A L IP++LYEAA IDGA++ + W I +PLL P ++ +L++ S Sbjct: 15 WQYIPFYMIFFIAALSNIPQELYEAAKIDGATQGQYFWRIELPLLTPSIKTACILSLIGS 74 Query: 63 LKGYESIMVLTQGGPYSKTEVMYLYLFKLLFPISPEVQTQQQLGYGSAVGFA 114 LK ++ I V+T+GGP + TE+M Y++K F ++GYGS + A Sbjct: 75 LKYFDLIYVMTEGGPSNATELMATYMYKNAF-------ASFKMGYGSTIASA 119 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.144 0.472 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 266,869,968 Number of extensions: 10517859 Number of successful extensions: 32050 Number of sequences better than 1.0e-05: 952 Number of HSP's gapped: 32009 Number of HSP's successfully gapped: 952 Length of query: 172 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 55 Effective length of database: 439,570,995 Effective search space: 24176404725 Effective search space used: 24176404725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 121 (51.2 bits)