BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0005.p (444 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00020323.1| hypothetical protein [Chloroflexus aurantiacus] 162 1e-38 ref|NP_244547.1| sugar ABC transporter (sugar-binding protein) [... 134 3e-30 ref|NP_694045.1| sugar ABC transporter sugar-binding protein [Oc... 124 5e-27 ref|NP_623882.1| Sugar-binding periplasmic proteins/domains [The... 118 2e-25 dbj|BAD02386.1| putative sugar-binding lipoprotein [Streptomyces... 107 6e-22 >ref|ZP_00020323.1| hypothetical protein [Chloroflexus aurantiacus] Length = 347 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/330 (32%), Positives = 171/330 (51%), Gaps = 12/330 (3%) Query: 117 QELVNGGLLVDMEKFLKDEGLYDKFYEPALKY-QELPDGS-LYLLPMEYHMEMTWYNKKI 174 ++L G ++++E+ K+ G+YD+ A+ + L GS LY LP+E ++E WYNK+I Sbjct: 16 RDLAASGKVLELEQTFKELGIYDRLNPGAVSLLKNLVGGSGLYALPLELNIEGFWYNKQI 75 Query: 175 FADNNLTVPKTLDDLLAVSKALKDKGITPIAVDGVDVWPVLRYAAMYPFRTTGNQFIRDL 234 FA++NL VP T D+LLAV+ L GI P AV G+ WP+ R Y R G + + Sbjct: 76 FAEHNLAVPTTWDELLAVADKLHQAGIQPFAVSGLQKWPLTRLINGYVMRVYGYDVMSRV 135 Query: 235 SQGKAKMSDAAGMQAANFASQIG--KYFQDGFATTDYTTAKNLFLNGQAAMYNMGTWEIP 292 G+ K++DA + AA + YF G T DY A++LFL G+AAMY MG+W + Sbjct: 136 VNGELKVTDAGFIAAAQIVQDMAMKGYFGQGVNTLDYAPAQDLFLQGRAAMYYMGSWALR 195 Query: 293 SFVEESLPEGLKGNVDYFYLPTTSNAVTPDNEFFGNSGIGLGASAKTFDGLPK---EFLS 349 F L + N+ +F +P V N++ N+G+ S K F P+ E++ Sbjct: 196 DFNNPELNKIGIDNIGFFNIPLVEGGVGTLNDYSINAGLTTSFSQKEFSRNPQGYGEWMK 255 Query: 350 YVLKNYSDVYVAKQQMSPLKFTIDD-ESKFSPLFLRIKKDMDNYGSEFAKPW-DTLLDPN 407 V Y D +++ M FT+ SPL ++DN + PW + + Sbjct: 256 AVFSAYGDRAMSELGMIT-GFTVSQIPDNVSPLTRLTVAEIDNVKN--GAPWFEAYFNAR 312 Query: 408 TNSVMSDLITKLTMGFVTPEDFAKQIDEAI 437 T +V +D + L G ++PE++ ++ +AI Sbjct: 313 TQAVATDNVQLLVTGDMSPEEYMAELQKAI 342 >ref|NP_244547.1| sugar ABC transporter (sugar-binding protein) [Bacillus halodurans] pir||H84109 sugar ABC transporter (sugar-binding protein) BH3680 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07399.1| sugar ABC transporter (sugar-binding protein) [Bacillus halodurans] Length = 438 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 107/415 (25%), Positives = 189/415 (45%), Gaps = 18/415 (4%) Query: 35 DQAGASNAPKEQTVT------W-LSARPENGAIVQTVKELADRFAADHPGFKLDLQVTAD 87 D+A + E+ VT W + P++ IV ++ F AD+P ++L+V + Sbjct: 28 DEASGPDTSTEEDVTINFMHLWPQGSSPDHNRIV---NQIISEFEADNPHITVELEVLEN 84 Query: 88 RPSYLTKLRTLVASGQMPDFIDSDADPFAQELVNGGLLVDMEKFLKDEGLYDKFYEPALK 147 Y KL+ + +S Q+PD + F + VNG L ++ L+D GL ++F ++ Sbjct: 85 E-QYKNKLQVISSSNQLPDVGMTWPAGFLEPYVNGKLFTPLDDILED-GLREQFVAGTVE 142 Query: 148 YQELPDGSLYLLPMEYHMEMTWYNKKIFADNNLTVPKTLDDLLAVSKALKDKGITPIAVD 207 E+ DG Y LP+E ++ +YNK IF + L P+T ++ + V L + G+TPIA+ Sbjct: 143 AYEI-DGQAYALPLELNIAPVFYNKAIFDEYGLEAPETYEEFIHVVDTLVENGVTPIALG 201 Query: 208 GVDVWPVLRYAAMYPFRTTGNQFIRDLSQGKAKMSDAAGMQAANFASQI--GKYFQDGFA 265 D W + R G + D + AA ++ F GF Sbjct: 202 NRDRWTGSLWYMYMAERIGGADALNSAIDRSGSFEDERLIDAAAHIQELIDRDAFIRGFN 261 Query: 266 TTDYTTAKNLFLNGQAAMYNMGTWEIPSF-VEESLPEGLKGNVDYFYLPTTSNAVTPDNE 324 AK F+NG AAMY +G+W++P++ E +P+ + + +F PT N Sbjct: 262 GLSDQEAKAEFMNGGAAMYLIGSWDLPNYTTNEEVPQEFRDGISFFKFPTIDGGEGDINS 321 Query: 325 FFGNSGIGLGASAKT-FDGLPKEFLSYVLKNYSDVYVAKQQMSPLKFTIDDESKFSPLFL 383 + G G+GL + + K+F+ Y ++ + V + P DE LF+ Sbjct: 322 WVGGPGVGLFVAENSDVKEEAKQFVKYFIEEWGKYSVEDAGVIPGTQVNTDEVDLPDLFI 381 Query: 384 RIKKDMDNYGSEFAKPWDTLLDPNTNSVMSDLITKLTMGFVTPEDFAKQIDEAIA 438 + ++ N+ S+ D + + ++I L VTPE FA++ ++A++ Sbjct: 382 DVLDEL-NHASDITLFADVQMSASVAETHLNMIQSLFGHEVTPEAFAEEHEKALS 435 >ref|NP_694045.1| sugar ABC transporter sugar-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC15079.1| sugar ABC transporter sugar-binding protein [Oceanobacillus iheyensis HTE831] Length = 435 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 112/444 (25%), Positives = 200/444 (45%), Gaps = 20/444 (4%) Query: 4 KMSKAFTGLAVFXXXXXXXXXXXXXXXXXXPDQAGASNAPKEQTVTWLSARPENGAI--V 61 KM KAFT L D+ AS K TV ++ PE + Sbjct: 2 KMKKAFTVLTFVLICCLLMVACSGE-----EDENSASGDSK--TVKFMHLWPEGSSAQHY 54 Query: 62 QTVKELADRFAADHPGFKLDLQVTADRPSYLTKLRTLVASGQMPDFIDSDADPFAQELVN 121 + V ++ + F ++ G ++L+V ++ Y K++ S ++PD + A + + V+ Sbjct: 55 KVVNQIIEDFETENEGIDIELEVLSNE-QYKEKIKVQSTSNELPDVGMTWAAGYMEPFVD 113 Query: 122 GGLLVDMEKFLKDEGLYDKFYEPALKYQELPDGSLYLLPMEYHMEMTWYNKKIFADNNLT 181 G + ++ L+++ L ++F + D + Y LP+E ++ +YNK IF + L Sbjct: 114 GNMFASLDDILEEDNLSEEFVAGTTDAFSIDD-TAYGLPLELNISSIYYNKAIFDEYGLE 172 Query: 182 VPKTLDDLLAVSKALKDKGITPIAVDGVDVWPVLRYAAMYPFRTTGNQFIRDLSQGKA-K 240 P TLD+ V L + + P+A+ D W + R G++ + + ++ Sbjct: 173 EPTTLDEFNQVVDTLNENDVIPVALGNRDAWTGSMWYMYLANRLGGDEDVLTSAIDRSGS 232 Query: 241 MSDAAGMQAANFASQI--GKYFQDGFATTDYTTAKNLFLNGQAAMYNMGTWEIPSF-VEE 297 D A ++AA + F GF AK++F+ QAAMY + TW++P++ E Sbjct: 233 FEDPALLKAAEHLQGLVNDNSFVSGFNGLADQEAKSMFMESQAAMYLIATWDLPNYTTNE 292 Query: 298 SLPEGLKGNVDYFYLPTTSNAVTPDNEFFGNSGIGLGASAKT-FDGLPKEFLSYVLKNYS 356 +P+ + +V YF P + N + G G+GL S + K F+SY +K + Sbjct: 293 DVPQEFRDSVGYFPFPQVDGS-GDFNSYVGGPGVGLFVSENSEVKEEAKTFVSYFVKEWG 351 Query: 357 DVYVAKQQMSPLKFTIDDESKFSP-LFLRIKKDMDNYGSEFAKPWDTLLDPNTNSVMSDL 415 + V + + P ID E+ P L++ + D++N S D + + V D+ Sbjct: 352 ERAVTEVGIIPAT-KIDGEALDLPELYVEVLDDLNN-ASNITLYADVQMSASAAQVHLDM 409 Query: 416 ITKLTMGFVTPEDFAKQIDEAIAK 439 I L G +TPE+F K +E +A Sbjct: 410 IQALFGGEITPEEFVKTHEETLAN 433 >ref|NP_623882.1| Sugar-binding periplasmic proteins/domains [Thermoanaerobacter tengcongensis] gb|AAM25486.1| Sugar-binding periplasmic proteins/domains [Thermoanaerobacter tengcongensis] Length = 453 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 169/385 (43%), Gaps = 28/385 (7%) Query: 67 LADRFAADHPGFKLDLQVTADRPSYLTKLRTLVASGQMPDFIDSDADP-FAQELVNGGLL 125 L D + +HP K++++ D P Y K + AS +MPD P F ++ GL+ Sbjct: 74 LIDEYMKEHPNVKIEVEALQDEP-YKQKFKVYAASNEMPDIFMVWGQPSFFLPVMKAGLV 132 Query: 126 --VDMEKFLKDEGLYDKFYEPALKYQELPDGSLYLLPMEYHMEMTWYNKKIFADNNLTVP 183 + M++ +KD G F +LK + +G LY LP + +YNK +F ++ VP Sbjct: 133 EEIKMDQ-IKDYG----FKTSSLK-DFMYEGKLYGLPRNTDFMVLYYNKGLFDKYSVNVP 186 Query: 184 KTLDDLLAVSKALKDKGITPIAVDGVDVWPVLRYAAMYPFRTTGNQ--FIRDLSQGKAKM 241 T D+LL K + I PI+++G D W + + +G+Q R LS+ Sbjct: 187 NTFDELLGAVKTFRKNNIAPISINGKDKWSLAILYQDLVLKESGDQEYIYRVLSEKNNIS 246 Query: 242 SDAAGMQAA-NFASQIGKY-FQDGFATTDYTTAKNLFLNGQAAMYNMGTWEIPSFVEESL 299 D ++AA +F + FQD F DY A NLF +AAMY MG+WE+ + Sbjct: 247 KDPILLKAAKDFVELVNAGGFQDSFIAADYGAANNLFAQEKAAMYYMGSWEVGMATNPNF 306 Query: 300 PEGLKGNVDYFYLPTTSNAVTPDNEFFGNSGIGLGASAKTFDGLPKEFLSYVL-----KN 354 + K N+D Y P S + + G G S+K+ + +E + +L Sbjct: 307 SDSFKKNLDVTYFPIISGGKAKNTDILAWHGGGYAVSSKS--PVKEEAMKLLLFMMEPNR 364 Query: 355 YSDVYVAKQQMSP----LKFTIDDESKFSPLFLRIKKDMDNYGSEFAKPWDTLLDPNTNS 410 ++ + + + P KF +E++ +I + S W PN + Sbjct: 365 WTKIGWQEGLVVPGQDWSKFMTGNETELQKKLTQI---FSSATSVSGTVWQDSYTPNFKT 421 Query: 411 VMSDLITKLTMGFVTPEDFAKQIDE 435 LI L +TPE F +++E Sbjct: 422 EAETLIQMLAAKTITPEQFLSKLEE 446 >dbj|BAD02386.1| putative sugar-binding lipoprotein [Streptomyces thermoviolaceus] Length = 436 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 100/387 (25%), Positives = 163/387 (42%), Gaps = 17/387 (4%) Query: 61 VQTVKELADRFAADHPGFKLDLQVTADR---PSYLTKLRTLVASGQMPDFIDSDADPFAQ 117 V+ + A RF A K + +V +R Y KLRT + S PD + + Sbjct: 49 VKVQDKAASRFNASAEAKKANAKVKMERIPASDYPAKLRTAMGSPNAPDIFFNWGGGSIK 108 Query: 118 ELVNGGLLVDMEKFLKDEGLYDKFYEPALKYQELPDGSLYLLPME-YHMEMTWYNKKIFA 176 G LVD+ +K + + + P++ DG Y +PM + +YNK +FA Sbjct: 109 AYKEAGQLVDLTDVIKSDEVLSTGFLPSVVAAGSLDGHEYGIPMRGMQPVLLFYNKSVFA 168 Query: 177 DNNLTVPKTLDDLLAVSKALKDKGITPIAVDGVDVWPVLRYAAMYPFRTTGNQFIRDLSQ 236 ++ LT P T D LL LK G+TP A+ GV++WP L + R G Q + Sbjct: 169 EHKLTPPTTWDQLLDNVAKLKKAGVTPFALGGVEIWPELMWLEYLVDRIGGPQVFDKIRN 228 Query: 237 GKAK-MSDAAGMQAANFASQI--GKYFQDGFATTDYTT--AKNLFLNGQAAMYNMGTWEI 291 G A D A ++AA Q+ F GF++ Y A L G+A M+ MG+WE Sbjct: 229 GDASGWGDPAVLKAAQTVKQLVDEGAFGKGFSSVSYNNGGAPALLAKGKAGMHLMGSWEY 288 Query: 292 PSFVEESLPEGLKGNVDYFYLPTTSNAVTPDNEFFGNSGIGLGASAKTFDGLPKEFLSYV 351 + + + P+ K ++ + P+ GN +A+T G ++++ Sbjct: 289 STQLGK-FPDFAKKDLGWCAFPSFEGGAGDIRNVVGNPCNYWSVNART--GNKDGAIAFL 345 Query: 352 LKNYSDVY---VAKQQMSPLKFTIDD--ESKFSPLFLRIKKDMDNYGSEFAKPWDTLLDP 406 S+ Y + P ++ +S +P F + + + F WD +DP Sbjct: 346 RDCASEAYTKDLIDNGDVPTTTIAENMLDSSPNPEFAKFQYQLVQKAPNFTLSWDQAVDP 405 Query: 407 NTNSVMSDLITKLTMGFVTPEDFAKQI 433 + M I KL +G +PE F + Sbjct: 406 DWQQPMLTEINKLFVGKSSPEQFVSAL 432 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.133 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 643,612,174 Number of extensions: 28192823 Number of successful extensions: 83717 Number of sequences better than 1.0e-05: 196 Number of HSP's gapped: 83686 Number of HSP's successfully gapped: 196 Length of query: 444 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 315 Effective length of database: 406,989,807 Effective search space: 128201789205 Effective search space used: 128201789205 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)