BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0003.p (277 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00020541.1| hypothetical protein [Chloroflexus aurantiacus] 207 2e-52 ref|NP_244549.1| sugar ABC transporter (permease) [Bacillus halo... 183 3e-45 ref|NP_691697.1| sugar ABC transporter permease [Oceanobacillus ... 177 3e-43 ref|NP_694043.1| sugar ABC transporter permease [Oceanobacillus ... 166 5e-40 ref|NP_391138.1| similar to sugar permease [Bacillus subtilis] >... 156 5e-37 >ref|ZP_00020541.1| hypothetical protein [Chloroflexus aurantiacus] Length = 288 Score = 207 bits (527), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 105/253 (41%), Positives = 155/253 (61%), Gaps = 1/253 (0%) Query: 26 PVVWLMLSSFKSSIELTTQP-FAMPSSWSFENYASVFRESSLLLYIKNTAIVTFVCLALI 84 P+ WL+LSSFK+ E + P +A+P + ++NY + E + +Y +N+ +VT L LI Sbjct: 36 PLTWLLLSSFKAPAEFSLNPIYALPEGFYWQNYIRAWTEGRMGVYFRNSLMVTIPSLFLI 95 Query: 85 IFLSATAGFALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPALILP 144 + L + A F + + R N+ +L+ F +GIMIP+Q+ L+PLF +Y LLN++ LIL Sbjct: 96 LCLGSMAAFGIEILKWRFNNVVLVIFLLGIMIPVQMILLPLFAIYNQLQLLNTFTGLILV 155 Query: 145 QVGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASINFI 204 F LPL+I + SF + +P E++EAA+IDG NIYQ+F+ I P+ N ITV + F Sbjct: 156 YTAFGLPLTIFLLVSFAKSLPHEVLEAALIDGANIYQIFLYIALPMMANAIITVGLVQFF 215 Query: 205 FIWNDFVFSNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLFLNK 264 FIWND + S TF +D +T+ GL F+G FG +WG TFA+ YL LN Sbjct: 216 FIWNDLLISLTFISDSELRTVQTGLLSFVGRFGQREWGPTFASITTSVIPILFLYLILNN 275 Query: 265 YVMAGVSDGAVKG 277 +M G++ GAVKG Sbjct: 276 AIMKGLTSGAVKG 288 >ref|NP_244549.1| sugar ABC transporter (permease) [Bacillus halodurans] pir||B84110 sugar ABC transporter (permease) BH3682 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07401.1| sugar ABC transporter (permease) [Bacillus halodurans] Length = 293 Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 100/245 (40%), Positives = 151/245 (61%), Gaps = 2/245 (0%) Query: 34 SFKSSIEL-TTQPFAMPSSWSFENYASVFRESSLLLYIKNTAIVTFVCLALIIFLSATAG 92 S K + E+ P A+P+ +ENYA V+ E ++ LY N+ IVT + L + L++ Sbjct: 50 SLKDNQEVFNLPPLALPTDPKWENYAKVWTEGNIGLYFLNSVIVTGSAVILTVLLASFVT 109 Query: 93 FALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPALILPQVGFALPL 152 FAL +M +L+ +L F VG+MIP+ TLIPLF + + GL++ A+IL F LPL Sbjct: 110 FALTRMRWKLSKLVLGLFMVGLMIPVHSTLIPLFNFFLNVGLMDHPLAIILTYTAFNLPL 169 Query: 153 SILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASINFIFIWNDFVF 212 +I+I FY +P EL EAA++DGC+I+++F +II P+T T A IN I+ WN+FVF Sbjct: 170 TIMILLGFYYTLPRELEEAAIMDGCSIHRLFFQIILPMTAPVVATTAIINMIYNWNEFVF 229 Query: 213 SNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLFLNKYVMAGVSD 272 NTF + YKT+ VG+Q FIG + +TDWG A + ++FL+ ++ G++ Sbjct: 230 VNTFISSDKYKTLTVGIQNFIGQY-STDWGAIGATLVISILPILLAFIFLSNRIVEGITA 288 Query: 273 GAVKG 277 G+VKG Sbjct: 289 GSVKG 293 >ref|NP_691697.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC12732.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 290 Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 146/252 (57%), Gaps = 1/252 (0%) Query: 26 PVVWLMLSSFKSSIELTTQPFAMPSSWSFENYASVFRESSLLLYIKNTAIVTFVCLALII 85 P++W+ ++SFKS E T F P+ + ENYA+ + ++L + KN+ V + + Sbjct: 40 PIIWMAINSFKSEQEFTVNQFGFPNEFILENYANAWEIANLGVLFKNSIFVCVTATLVTV 99 Query: 86 FLSATAGFALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPALILPQ 145 + A A + L + R N + FF G++IPI TL+P+FI+ K+ GLLN+ L+ P Sbjct: 100 IIGALASYFLARFKFRFNKIMYTFFIFGLLIPIHATLVPMFILMKNLGLLNTEITLLFPY 159 Query: 146 VGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASINFIF 205 V F LP++I I TSF + P ++ E+A++DG I+++F II P++ TV +NFI+ Sbjct: 160 VAFHLPITIFILTSFMKAFPKDIEESAIMDGAGIFRIFWSIILPMSRPAIATVVILNFIY 219 Query: 206 IWNDFVFSNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLFLNKY 265 WN+F F+ ND A +T+ +GL F G F T++G A + YLFL K Sbjct: 220 NWNEFSFALVLINDPALQTLPLGLANFAGQF-TTNYGAQMAGLTMSLVPIVIFYLFLEKE 278 Query: 266 VMAGVSDGAVKG 277 ++ G++ GAVKG Sbjct: 279 IVNGMTSGAVKG 290 >ref|NP_694043.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC15077.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 273 Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 152/253 (60%), Gaps = 3/253 (1%) Query: 26 PVVWLMLSSFKSSIEL-TTQPFAMPSSWSFENYASVFRESSLLLYIKNTAIVTFVCLALI 84 P++WL+ S K++ E+ PFA+P+ +ENY VF E + Y N+ +T V L Sbjct: 23 PIIWLVSFSLKTNQEIFAGNPFALPTDPKWENYLKVF-EGGIGTYFWNSIWITVVATILT 81 Query: 85 IFLSATAGFALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPALILP 144 I +++ A FA+ +M +L+S +L +G+MIPI LIPL+ M+ + L+++ ++++ Sbjct: 82 ILIASMATFAITRMKWKLSSFVLGIIMIGLMIPIHSALIPLYNMFLNVNLIDNPVSIVVT 141 Query: 145 QVGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASINFI 204 + + LP++++I FY +P E+ EAA+IDG +I+++F +II PL+ T IN I Sbjct: 142 YMTYNLPITVMILLGFYTTLPREIEEAAIIDGSSIHRLFFKIILPLSAPIMSTTVIINMI 201 Query: 205 FIWNDFVFSNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLFLNK 264 + WN+FVF NTF + +KT+ VG+Q FIG + TDWG A + ++F + Sbjct: 202 YNWNEFVFVNTFISSDKFKTLTVGIQNFIGQY-MTDWGAIGATLVISVLPIIIAFIFFSD 260 Query: 265 YVMAGVSDGAVKG 277 +M G+S AVKG Sbjct: 261 KIMEGLSASAVKG 273 >ref|NP_391138.1| similar to sugar permease [Bacillus subtilis] sp|O32154|YURM_BACSU Hypothetical ABC transporter permease protein yurM pir||D70018 sugar permease homolog yurM - Bacillus subtilis emb|CAB15248.1| yurM [Bacillus subtilis subsp. subtilis str. 168] Length = 300 Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 144/252 (57%), Gaps = 2/252 (0%) Query: 26 PVVWLMLSSFKSSIELTTQPFAMPSSWSFENYASVFRESSLLLYIKNTAIVTFVCLALII 85 P++W+++S+FK+S ++ +++PSSW EN+ S + + + Y N+ IVT + + + Sbjct: 51 PLLWMVMSAFKNSDDIFEHSWSLPSSWHPENFVSAWNQG-ISSYFMNSVIVTALTCVITV 109 Query: 86 FLSATAGFALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPALILPQ 145 F+SA A + L + + L+ G+M+ QV+L+PL+ + + GL N+Y ALILP Sbjct: 110 FISAWAAYGLSRFEFKGKGFFLVLCLGGLMLTPQVSLVPLYSIIQSLGLYNTYWALILPY 169 Query: 146 VGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASINFIF 205 + +P +I++ S++ + EL EAA +DGC + VF RI P+++ +T + Sbjct: 170 AAYRIPFTIILIRSYFLSISKELEEAAYLDGCTSFGVFFRIFLPMSVPILVTSGILTAYH 229 Query: 206 IWNDFVFSNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLFLNKY 265 WN+F+F+ F +D+ +TI GL +F A TDWG A + +L + KY Sbjct: 230 TWNEFMFAIIFIDDENLRTIPAGLMQFRDAL-QTDWGVLLAGLTISAAPIIILFLLMQKY 288 Query: 266 VMAGVSDGAVKG 277 + G++ G+VKG Sbjct: 289 FVRGIASGSVKG 300 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.329 0.142 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 336,874,190 Number of extensions: 12577880 Number of successful extensions: 45489 Number of sequences better than 1.0e-05: 1337 Number of HSP's gapped: 44296 Number of HSP's successfully gapped: 1338 Length of query: 277 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 153 Effective length of database: 420,565,302 Effective search space: 64346491206 Effective search space used: 64346491206 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 125 (52.8 bits)