BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0001.p (330 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAJ96311.1| unknown [environmental sequence] 135 2e-30 ref|NP_243085.1| transcriptional regulator involved in degradati... 128 1e-28 ref|ZP_00017645.1| hypothetical protein [Chloroflexus aurantiacus] 127 3e-28 gb|EAI26787.1| unknown [environmental sequence] 124 3e-27 ref|NP_229005.1| transcriptional regulator, LacI family [Thermot... 123 6e-27 >gb|EAJ96311.1| unknown [environmental sequence] Length = 333 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 100/333 (30%), Positives = 169/333 (50%), Gaps = 14/333 (4%) Query: 6 VTLVQVAKDAGVSPATVSHFMNGNFHRMRPETREKISDSITKLGYQANPVAKSLITGKMY 65 T+ QV++ AGVS ATVS MNGN ++ TR+K+ D++ LGYQ N +A+SL + + Sbjct: 2 ATIYQVSEAAGVSLATVSRVMNGNA-KVSERTRKKVEDAMASLGYQPNAIAQSLASNRTN 60 Query: 66 TIGLVLSNSTYDGYFEDLYFLHFAKVLKQQLK----TMGYKLILLDFDEI-FMNIQMVDG 120 ++GL++S + YF DL VLKQ K T G+ + + I F+ + D Sbjct: 61 SVGLLVSE-LHGSYFGDLMST-VEHVLKQNGKHVIITAGHVDEKREHEAIEFLKSRRCDA 118 Query: 121 IIVKATLETEKFMPRLMDLNVPVITIGRHNLSYGAHIVRVNDYQCGQTGVDHLMSRGYHK 180 +I+ A ++ ++ L+D +PV+ I R + + V++ + G + G+ K Sbjct: 119 LILHAEAVSDDYLKTLVDSKIPVVVINRKVDALDENCFVVDNERGGYMATKAAIDAGHKK 178 Query: 181 IIILTYPHGQVPGFDDRLNGASQAMQEKG---NLTTVITGDMTESFGYDTVMQLHSNGQL 237 I ++ P + DRL G +A+QE G +V GD ES G + + L Sbjct: 179 IAYISGPLFKKDA-SDRLAGHKRALQEAGVTFRENSVFEGDFHESSGQEGMQHLQRTFSD 237 Query: 238 PQALFCLNDISAIGVLKACKDLNLSVPENLAVLGVDDMPTVSELL-SLSTIRHPINELAL 296 AL C ND A G + A ++ +P L+++G D++ L L+TI +PI+ + Sbjct: 238 FTALVCANDEMASGAMTAAREAGFDIPSQLSIIGFDNVLFSRYLYPKLTTINNPIHAMGE 297 Query: 297 NASELIIQSVETKGEPVQPVDRMFPIELMARHT 329 A+ ++Q V P+ P++ +F E++ R T Sbjct: 298 MAAYWVLQHVYDIKSPI-PIEHLFEPEVVNRDT 329 >ref|NP_243085.1| transcriptional regulator involved in degradation [Bacillus halodurans] pir||C83927 transcription regulator involved in degradation degA [imported] - Bacillus halodurans (strain C-125) dbj|BAB05938.1| transcriptional regulator involved in degradation [Bacillus halodurans] Length = 335 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/344 (26%), Positives = 175/344 (50%), Gaps = 39/344 (11%) Query: 7 TLVQVAKDAGVSPATVSHFMN--GNFHRMRPETREKISDSITKLGYQANPVAKSLITGKM 64 T+ VAK+AGVS ATVS +N GN MRP TR K+ ++ +L Y+ N +A +L Sbjct: 4 TIYDVAKEAGVSIATVSKVINHTGN---MRPATRLKVKQAMERLNYRPNLMATALTGKAT 60 Query: 65 YTIGLVLSNSTYDGYFEDLYFLHFAKVLKQQLKTMGYKLILLDFDE---------IFMNI 115 TIGL++ + + +F A+ ++ + G +I+ DE + Sbjct: 61 KTIGLLVPD------ISNPFFSEMARTIEDRAHEAGLSVIICSTDENEQKEKKYLELLQQ 114 Query: 116 QMVDGIIVKATLETEKFMPRLMDLNVPVITIGRHNLSYGAHIVRVNDYQCGQTGVDHLMS 175 + VDG I+ ++ + + RL + P++ + + + G + V+DY+ G +L++ Sbjct: 115 KRVDGFIIASSFHDREGLKRLKEQGTPIVMLTQDDGGLGVPSISVDDYKGGFEATSYLIT 174 Query: 176 RGYHKIIILTYPHGQVPGFDDRLNGASQA--------MQEKGNLTTVITGDMTESFGYDT 227 G+ +I ++ V R+ G +A ++E+ TT T + G Sbjct: 175 SGHKRIAVIAE---HVSSSRLRIYGYKEAHASHGIPFVEEQIYKTTASTEN-----GKFC 226 Query: 228 VMQLHSNGQLPQALFCLNDISAIGVLKACKDLNLSVPENLAVLGVDD-MPTVSELLSLST 286 ++ +H G LP A+F ND+ AIGV+ K+L + +PE+L+V+G D+ + + + +L+T Sbjct: 227 LLTMHEKGLLPSAIFACNDLIAIGVIHGAKELGIRIPEDLSVIGFDNTILATTTVPALTT 286 Query: 287 IRHPINELALNASELIIQSVETKGEPVQPVDRMFPIELMARHTS 330 + P+ ++ +L+++++ETK + V ++ EL+ R T+ Sbjct: 287 VAQPVADMGRKVVDLLLEAIETKALTNEKV--LYTPELIIRGTT 328 >ref|ZP_00017645.1| hypothetical protein [Chloroflexus aurantiacus] Length = 354 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 97/334 (29%), Positives = 158/334 (47%), Gaps = 31/334 (9%) Query: 1 MAKQRVTLVQVAKDAGVSPATVSHFMNGNFHRMRPETREKISDSITKLGYQANPVAKSLI 60 M +VTL VA AGVS TVS +NG+ + PET E+I ++ +LGY+ N +A+++ Sbjct: 16 MTASKVTLKDVAARAGVSYQTVSKVLNGDMQ-VAPETMERIQAAVQELGYRPNRIARNMR 74 Query: 61 TGKMYTIGLVLSNSTYDGYFEDLYFLHFAKVLKQQLKTMGYKLILLDFDEIFMNIQM--- 117 G+ + IG + T G + F + ++ +GY ++ F E I Sbjct: 75 AGRSFMIGYSWTQ-TEPGQVNHI-LDQFLSSMVREASAVGYYVLPFPFSEGKSQIDSYRD 132 Query: 118 ------VDGIIVKATLETEKFMPRLMDLNVPVITIGRHNLSYGAHIVRVNDYQCGQTGVD 171 VDG ++ + + + L+ P + GR N + V ++ + ++ Sbjct: 133 LIRSGNVDGFVLSSVNYHDPRIQYLLKQKFPFVAFGRSNPEWDFAWVDIDGAAGTRQAIE 192 Query: 172 HLMSRGYHKIIILTYPHGQVPGFDDRLNGASQAMQ------EKGNLTTVITGDMTESFGY 225 +L+ RG+ +I IL +P G +DRL G AM+ E G L + G+ T F Sbjct: 193 YLIGRGHRRIAILAWPEESRVG-NDRLQGYLDAMRAAEIDIEPGYL---LRGEGT--FEV 246 Query: 226 DTVMQLH----SNGQLPQALFCLNDISAIGVLKACKDLNLSVPENLAVLGVDDMPTVSEL 281 M LH + P A+ LND AIG + A ++ L + +LA++G DD P V L Sbjct: 247 GRAMTLHLLELPPERRPTAIMALNDTMAIGAMAAARECGLEIGTDLAIIGFDDAPMVQYL 306 Query: 282 L-SLSTIRHPINELALNASELIIQSVETKGEPVQ 314 L+++R PI E EL++ VE G P++ Sbjct: 307 FPPLTSVRQPIAEAGHKCVELLVSLVE--GRPIE 338 >gb|EAI26787.1| unknown [environmental sequence] Length = 360 Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 97/343 (28%), Positives = 167/343 (48%), Gaps = 27/343 (7%) Query: 2 AKQRVTLVQVAKDAGVSPATVSHFMNGNFHRMRP---ETREKISDSITKLGYQANPVAKS 58 ++ VT ++VAK AGVS ++VS F P +TR K+ D+ KLGYQ N +A+S Sbjct: 4 SRNSVTSIEVAKLAGVSQSSVSRA----FSHEGPVSVKTRRKVLDAARKLGYQPNAMARS 59 Query: 59 LITGKMYTIGLVLSNSTYDGYFEDLYFLHFAKVLKQQLKTMGYKLILL------DFDEIF 112 LIT + +G+V++N + ++ ++ L L ++ + +G K++L + D+I Sbjct: 60 LITRRTSMVGMVIANVHNNPFYTEVLDL-----LSRKFQKLGQKVMLFIVNRDQNLDDIL 114 Query: 113 MNI--QMVDGIIVKATLETEKFMPRLMDLNVPVITIGRHNLSYGAHIVRVNDYQCGQTGV 170 + V+GI+V A + PV I R+ A +Y+ G+ Sbjct: 115 PQLLEYQVEGILVTAATLSSTMAEECERWGRPVAMINRYVPGVHASWFCCANYEGGKMVA 174 Query: 171 DHLMSRGYHKIIILTYPHGQVPGFDDRLNGASQAMQEKGNLTTVITGDMTESFGYDTVMQ 230 L+ + + L +DR G + + ++ G+ T YD ++ Sbjct: 175 KLLLDANHQRPAFLAGSEDTTTS-NDRERGFMEILNQEKVEALREIGEYTYQDAYDAAIR 233 Query: 231 LHSNGQLPQALFCLNDISAIGVLKACKD-LNLSVPENLAVLGVDDMPTVS-ELLSLSTIR 288 L P A+FC NDI A+GV+ A K+ L L +PE ++++G DD+P S SL+T+R Sbjct: 234 LLDRKDPPDAIFCANDIMALGVMDAAKNGLGLKIPEEVSIIGFDDIPMSSWSSYSLTTVR 293 Query: 289 HPINELALNASELIIQSVET-KGEPVQPVDRMFPIELMARHTS 330 PI + + E ++ +E + EP+Q V P EL+ R ++ Sbjct: 294 QPIQRMVDASVEELLNRIENPETEPLQEV---IPGELVIRESA 333 >ref|NP_229005.1| transcriptional regulator, LacI family [Thermotoga maritima] pir||F72282 transcription regulator, LacI family - Thermotoga maritima (strain MSB8) gb|AAD36275.1| transcriptional regulator, LacI family [Thermotoga maritima] Length = 333 Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 160/317 (50%), Gaps = 21/317 (6%) Query: 1 MAKQRVTLVQVAKDAGVSPATVSHFMNGNFHRMRPETREKISDSITKLGYQANPVAKSLI 60 M K+ VT+ +A+ AGVS TVS +N N + ETR KI +LGY N A SL Sbjct: 1 MKKKYVTIRDIAEKAGVSINTVSRALN-NKPDISEETRRKILKIAQELGYVKNATASSLR 59 Query: 61 TGKMYTIGLVLSNSTYDGYFEDLYFLHFAKVLKQQLKTMGYKLILLDFDEIFMNIQ---- 116 + + +G+++++S Y E L K ++ + GY+++L++ + I+ N + Sbjct: 60 SKQTNIVGVIIADSANPFYAEVL------KGIEAASRKYGYQIMLMNTERIYENEEKAIE 113 Query: 117 -----MVDGIIVKATLETEKFMPRLMDLNVPVITIGRHNLSYGAHIVRVNDYQCGQTGVD 171 VDG+++ + + L++ VP + +GRH + ++ + G Sbjct: 114 VLLQRRVDGLLITPVQDRSDDIKTLIERKVPFVIVGRHFEELEVDEIHSDEVKGGYLATR 173 Query: 172 HLMSRGYHKIIILTYPHGQVPGFDDRLNGASQAMQEKG---NLTTVITGDMTESFGYDTV 228 HL+ RG II+++ + + RL G +A++E G + +I D+ GY + Sbjct: 174 HLIERGRKNIIMISGYLFKSAAYM-RLEGYRKALKEYGIPFSEKMIIETDIDIESGYRAM 232 Query: 229 MQLHSNGQLPQALFCLNDISAIGVLKACKDLNLSVPENLAVLGVDDMPTVSELL-SLSTI 287 + G +A+FC ND+ A GV+KA K+ +PE++AV+G DD+ S + SL+T+ Sbjct: 233 REAIEKGLEFEAVFCYNDLLAFGVIKALKECGYRIPEDVAVVGYDDIVYSSFICPSLTTV 292 Query: 288 RHPINELALNASELIIQ 304 R E+ A +++Q Sbjct: 293 RIKKFEMGFEAFRMLLQ 309 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 463,993,253 Number of extensions: 18494433 Number of successful extensions: 57744 Number of sequences better than 1.0e-05: 939 Number of HSP's gapped: 56480 Number of HSP's successfully gapped: 941 Length of query: 330 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 204 Effective length of database: 415,135,104 Effective search space: 84687561216 Effective search space used: 84687561216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)