BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0154.0001.p (176 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243386.1| transposase related protein (20) [Bacillus halo... 258 4e-68 gb|AAS55727.1| putative transposase [Aneurinibacillus thermoaero... 198 5e-50 gb|EAI68493.1| unknown [environmental sequence] 82 4e-15 gb|EAG90303.1| unknown [environmental sequence] 82 4e-15 gb|EAK44364.1| unknown [environmental sequence] 82 5e-15 >ref|NP_243386.1| transposase related protein (20) [Bacillus halodurans] pir||H83964 transposase related protein (20) BH2520 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06239.1| transposase related protein (20) [Bacillus halodurans] Length = 188 Score = 258 bits (660), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 118/176 (67%), Positives = 144/176 (81%) Query: 1 MKDEIHHLLFEDESMIRDYQAIQKTWFLRGKQRIIPTTGKHRGVKLLATVDYGTGKIVWQ 60 + +EI HLLF+DESMIRDYQA+Q TWFL+GKQRIIPT GKH+GVKL+ T++Y TG ++ Sbjct: 13 LNEEIDHLLFQDESMIRDYQALQYTWFLKGKQRIIPTYGKHQGVKLIGTLNYETGDVLCV 72 Query: 61 EDEQYTAETFLSFLKKVIDEYPTGKIVMVLDNARIHHAELLTPFLTEMKERLELVFLPPY 120 E+E+Y AE FL FL+KV+ YPTGKIVMVLDNARIHHA+L+ PFL + RLELVFLPPY Sbjct: 73 EEERYDAEAFLRFLQKVLKHYPTGKIVMVLDNARIHHAKLIEPFLRNHQHRLELVFLPPY 132 Query: 121 SPQFNAVEGLWKWLKSDVINNVFYHTVTEIRTNVQQFMEEIMKVPLTIIDRLCVRF 176 SP+ N +EGLWKWLKSDVINN+FY +V EIR NVQ F+ E+ P +IDRLC+R Sbjct: 133 SPELNLIEGLWKWLKSDVINNLFYSSVKEIRRNVQAFIRELNDSPRKVIDRLCIRL 188 >gb|AAS55727.1| putative transposase [Aneurinibacillus thermoaerophilus] Length = 132 Score = 198 bits (503), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 92/132 (69%), Positives = 107/132 (81%) Query: 1 MKDEIHHLLFEDESMIRDYQAIQKTWFLRGKQRIIPTTGKHRGVKLLATVDYGTGKIVWQ 60 M +EI HLLF+DE MIRDYQA+Q TWFLRGKQRIIPT GKH GVKL+ ++Y TG++ Sbjct: 1 MDEEIAHLLFQDECMIRDYQAVQYTWFLRGKQRIIPTYGKHHGVKLIGVLNYETGRVHCV 60 Query: 61 EDEQYTAETFLSFLKKVIDEYPTGKIVMVLDNARIHHAELLTPFLTEMKERLELVFLPPY 120 E+EQY AE FL FL+ V +YPTGKIVMVLDNARIHHA L+ PFL E + RLELVFLPPY Sbjct: 61 EEEQYDAEAFLRFLQHVPKQYPTGKIVMVLDNARIHHARLIQPFLEENQNRLELVFLPPY 120 Query: 121 SPQFNAVEGLWK 132 SP+ N +EGLWK Sbjct: 121 SPEMNLIEGLWK 132 >gb|EAI68493.1| unknown [environmental sequence] Length = 332 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 2/161 (1%) Query: 6 HHLLFEDESMIRDYQAIQKTWFLRGKQRIIPTTGKHRGVKLLATVDYGTGKIVWQEDEQY 65 H + +EDE I I W ++G+QR + T G+++ L + TG+I + ++ Sbjct: 161 HPVFYEDEVDIHLNPKIGAEWGIKGQQRKVATPGQNKKHYLAGALHSQTGQISYVSGQRK 220 Query: 66 TAETFLSFLKKVIDEYPTGK-IVMVLDNARIHHAELLTPFLTEMKERLELVFLPPYSPQF 124 T++ F+ L+KV +Y K + ++DN IH ++ +LTE + +L+FLP YSP Sbjct: 221 TSDLFIELLEKVKGQYRRAKSVTFIVDNYIIHKSKKTQKWLTE-NPKFKLLFLPVYSPWH 279 Query: 125 NAVEGLWKWLKSDVINNVFYHTVTEIRTNVQQFMEEIMKVP 165 N +E LW L + N T+ E+ V FME P Sbjct: 280 NKIEKLWHALHETITRNHRCKTMDELLEQVDHFMETAAPFP 320 >gb|EAG90303.1| unknown [environmental sequence] Length = 270 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 2/161 (1%) Query: 6 HHLLFEDESMIRDYQAIQKTWFLRGKQRIIPTTGKHRGVKLLATVDYGTGKIVWQEDEQY 65 H + +EDE I I W ++G+QR + T G+++ L + TG+I + ++ Sbjct: 99 HPVFYEDEVDIHLNPKIGAEWGIKGQQRKVATPGQNKKHYLAGALHSQTGQISYVSGQRK 158 Query: 66 TAETFLSFLKKVIDEYPTGK-IVMVLDNARIHHAELLTPFLTEMKERLELVFLPPYSPQF 124 T++ F+ L+KV +Y K + ++DN IH ++ +LTE + +L+FLP YSP Sbjct: 159 TSDLFIELLEKVKGQYRRAKSVTFIVDNYIIHKSKKTQKWLTE-NPKFKLLFLPVYSPWH 217 Query: 125 NAVEGLWKWLKSDVINNVFYHTVTEIRTNVQQFMEEIMKVP 165 N +E LW L + N T+ E+ V FME P Sbjct: 218 NKIEKLWHALHETITRNHRCKTMDELLEQVDHFMETAAPFP 258 >gb|EAK44364.1| unknown [environmental sequence] Length = 185 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 2/161 (1%) Query: 6 HHLLFEDESMIRDYQAIQKTWFLRGKQRIIPTTGKHRGVKLLATVDYGTGKIVWQEDEQY 65 H + +EDE I I W ++G+QR + T G+++ L + TG+I + ++ Sbjct: 14 HPVFYEDEVDIHLNPKIGAEWGIKGQQRKVATPGQNKKHYLAGALHSQTGQISYVSGQRK 73 Query: 66 TAETFLSFLKKVIDEYPTGK-IVMVLDNARIHHAELLTPFLTEMKERLELVFLPPYSPQF 124 T++ F+ L+KV +Y K + ++DN IH ++ +LTE + +L+FLP YSP Sbjct: 74 TSDLFIELLEKVKGQYRRAKSVTFIVDNYIIHKSKKTQKWLTE-NPKFKLLFLPVYSPWH 132 Query: 125 NAVEGLWKWLKSDVINNVFYHTVTEIRTNVQQFMEEIMKVP 165 N +E LW L + N T+ E+ V FME P Sbjct: 133 NKIEKLWHALHETITRNHRCKTMDELLEQVDHFMETAAPFP 173 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.324 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 267,132,475 Number of extensions: 10510771 Number of successful extensions: 33524 Number of sequences better than 1.0e-05: 89 Number of HSP's gapped: 33562 Number of HSP's successfully gapped: 89 Length of query: 176 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 59 Effective length of database: 439,570,995 Effective search space: 25934688705 Effective search space used: 25934688705 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 121 (51.2 bits)