BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0048.p (548 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183498.1| hypothetical protein Exigu112101 [Exiguobacte... 91 5e-17 ref|NP_464546.1| similar to two-component sensor histidine kinas... 91 9e-17 ref|NP_470357.1| similar to two-component sensor histidine kinas... 90 1e-16 ref|NP_242065.1| two-component sensor histidine kinase [Bacillus... 89 3e-16 ref|ZP_00188270.1| hypothetical protein Rxyl057401 [Rubrobacter ... 88 5e-16 >ref|ZP_00183498.1| hypothetical protein Exigu112101 [Exiguobacterium sp. 255-15] Length = 341 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 11/206 (5%) Query: 334 ITNEQNRIADEMHDSVSQSLFGIVYATHSLKQTWRKMXXXXXXXXXXXXHDSATKVAK-E 392 IT E+ R+A ++HDSVSQ L+ I T + KQT + ++ + A+ E Sbjct: 138 ITEERKRLARDLHDSVSQQLYAISMMTTAAKQTI--LTQPETAAKQIDLVETMAQTAQSE 195 Query: 393 LRITIYSLSSKKSGGPTWLGMVRSHLKSLSRLNDVEIELKITGDDFSLPYPYHKALFRII 452 +R + L + G T + L+ LSR E+ K+ + LP P LFRI+ Sbjct: 196 MRSLLLQLRPVELEGMTLQQGLTQLLEELSRKQSTELSWKL--EVIELPRPIENELFRIV 253 Query: 453 SEATGNAIRHGAASRVDVELSLKPKWIRLSIVDDGVGFDTDLLWTESEDNTGGLGMKNMQ 512 E NA+RH AS +D+EL + LS+ DDGVGF D E G+ +M+ Sbjct: 254 QEGLTNALRHAKASHMDIELRQFNDTVILSMNDDGVGFVVD------EKKLASYGINSMR 307 Query: 513 YLAQSLGGDFQLSSSENAGTRILISI 538 +GG +L S GT+I + + Sbjct: 308 ERTAEMGGTIRLVSVPGQGTQIEVKL 333 >ref|NP_464546.1| similar to two-component sensor histidine kinase in particular B. subtilis YvqE protein [Listeria monocytogenes EGD-e] pir||AE1202 two-component sensor histidine kinase in particular B. subtilis YvqE protein homolog lmo1021 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99099.1| lmo1021 [Listeria monocytogenes] Length = 352 Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 8/208 (3%) Query: 333 IITNEQNRIADEMHDSVSQSLFGIVYATHSLKQTWRKMXXXXXXXXXXXXHDSATKVAKE 392 I++ E++RIA E+HDSVSQ LF + +L + K + E Sbjct: 144 ILSEERHRIARELHDSVSQQLFAAMMLLSALNEQSEKSATPAMQKQLKMVESIVNESQSE 203 Query: 393 LRITIYSLSSKKSGGPTWLGMVRSHLKSLSRLNDVEIELKITGDDFSLPYPYHKALFRII 452 +R + L + G + + LK L+ +E+E +I +D SL LFRI+ Sbjct: 204 MRALLLHLRPTQLEGKSLKTGIEQLLKELTTKLPIEVEWQI--EDISLQKGIEDHLFRIV 261 Query: 453 SEATGNAIRHGAASRVDVELSLKPKWIRLSIVDDGVGFDTDLLWTESEDNTGGLGMKNMQ 512 E N +RH A ++V L + +VDDGVGFD D + G G++NM+ Sbjct: 262 QELLSNTLRHSKAKLLEVRLVTMDNLAVMKVVDDGVGFDMDNV------RQGSYGLQNMR 315 Query: 513 YLAQSLGGDFQLSSSENAGTRILISIPV 540 GG ++ S GT + I IP+ Sbjct: 316 ERVAEFGGTIKIISFPGRGTSVEIKIPL 343 >ref|NP_470357.1| similar to two-component sensor histidine kinase in particular B. subtilis YvqE protein [Listeria innocua] pir||AC1560 two-component sensor histidine kinase in particular B. subtilis YvqE protein homolog lin1020 [imported] - Listeria innocua (strain Clip11262) emb|CAC96251.1| lin1020 [Listeria innocua] Length = 352 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 8/208 (3%) Query: 333 IITNEQNRIADEMHDSVSQSLFGIVYATHSLKQTWRKMXXXXXXXXXXXXHDSATKVAKE 392 I++ E++RIA E+HDSVSQ LF + +L + K + E Sbjct: 144 ILSEERHRIARELHDSVSQQLFAAMMLLSALNEQSEKSATPAMQKQLKMVESIVNESQSE 203 Query: 393 LRITIYSLSSKKSGGPTWLGMVRSHLKSLSRLNDVEIELKITGDDFSLPYPYHKALFRII 452 +R + L + G + + LK L+ +E+E +I +D +L LFRI+ Sbjct: 204 MRALLLHLRPTQLEGKSLKTGIEQLLKELTTKLPIEVEWQI--EDINLQKGIEDHLFRIV 261 Query: 453 SEATGNAIRHGAASRVDVELSLKPKWIRLSIVDDGVGFDTDLLWTESEDNTGGLGMKNMQ 512 E N +RH A ++V L + +VDDGVGFD D + G G++NM+ Sbjct: 262 QELLSNTLRHSKAKLLEVRLVTMDNLAVMKVVDDGVGFDMDNV------RQGSYGLQNMR 315 Query: 513 YLAQSLGGDFQLSSSENAGTRILISIPV 540 GG ++ S + GT + I IP+ Sbjct: 316 ERVAEFGGTIKIISFKGRGTSVEIKIPL 343 >ref|NP_242065.1| two-component sensor histidine kinase [Bacillus halodurans] pir||G83799 two-component sensor histidine kinase BH1199 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04918.1| two-component sensor histidine kinase [Bacillus halodurans] Length = 351 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 11/234 (4%) Query: 307 QQLMFLSELSAIILERHELGVIENRLIITNEQNRIADEMHDSVSQSLFGIVYATHSLKQT 366 +Q+ L LS+ ER ++ + +T E+ R+A ++HD+VSQ LF I T ++KQ Sbjct: 124 EQVASLQRLSS---ERAKMQETVKKAAVTEERQRLARDLHDAVSQQLFAISMMTAAIKQN 180 Query: 367 WRKMXXXXXXXXXXXXHDSATKVAKELRITIYSLSSKKSGGPTWLGMVRSHLKSLSRLND 426 + + T A E+R + L + G + V L L + Sbjct: 181 LHEATEEVQQQMDVVEKMANTAQA-EMRALLLHLRPAELEGKSLQQGVEYLLHELEQKQG 239 Query: 427 VEIELKITGDDFSLPYPYHKALFRIISEATGNAIRHGAASRVDVELSLKPKWIRLSIVDD 486 +I ++ D LP LFR++ EA N +RH A V+V + +RL ++DD Sbjct: 240 FKITKRLEPMD-ELPKGVEDQLFRMLQEAISNILRHAQAHHVEVRFWQTERQVRLKLIDD 298 Query: 487 GVGFDTDLLWTESEDNTGGLGMKNMQYLAQSLGGDFQLSSSENAGTRILISIPV 540 GVGFD ++ G G++ M +GG + S+ GT++ IP+ Sbjct: 299 GVGFDV------QKETHGSYGLQTMHERINEIGGVLDIVSAPGKGTQLEAKIPI 346 >ref|ZP_00188270.1| hypothetical protein Rxyl057401 [Rubrobacter xylanophilus DSM 9941] Length = 501 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 23/243 (9%) Query: 307 QQLMFLSE-LSAIILERHELGVIENRLIITNEQNRIADEMHDSVSQSLFGIVYATHSLKQ 365 ++L ++E L A++ R EL +E R N+ A ++HDSV Q +F + + Sbjct: 267 RELNLMAERLDALVQSRQELATLEAR-------NQFARDLHDSVKQQVFATSLQLAAARA 319 Query: 366 TWRKMXXXXXXXXXXXXHDSATKVAKELRITIYSLSSKKSGGPTWLGMVRSHLKSLSRLN 425 + +EL + I+ + G +R ++K S+ Sbjct: 320 LL-DDDSGAAGEHLAQAQELVQGAQRELNVLIHEMRPAALKGKGLAAALRDYVKDWSQKA 378 Query: 426 DVEIELKITGDDFSLPYPYHKALFRIISEATGNAIRHGAASRVDVELSLKPKWIRLSIVD 485 ++ E + G+ P +ALFR+ EA N RH ASR +V+L P+ + L + D Sbjct: 379 EIPAEFHVRGER-EAPLETEQALFRVAQEALSNVARHSGASRAEVDLEYSPRSVTLRVAD 437 Query: 486 DGVGFDTDLLWTESEDNTG-GLGMKNMQYLAQSLGGDFQLSSSENAGTRILISIPVGVAE 544 DG GFD TG G G+++M+ LGG ++ S+ GTR+ VGV Sbjct: 438 DGRGFDPAF-------GTGDGFGLQSMRGRLMRLGGRAEIESAPGEGTRV-----VGVCP 485 Query: 545 LKN 547 L++ Sbjct: 486 LRD 488 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 733,785,527 Number of extensions: 28624981 Number of successful extensions: 88029 Number of sequences better than 1.0e-05: 217 Number of HSP's gapped: 88013 Number of HSP's successfully gapped: 217 Length of query: 548 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 417 Effective length of database: 401,559,609 Effective search space: 167450356953 Effective search space used: 167450356953 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)