BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0047.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243079.1| two-component response regulator [Bacillus halo... 132 5e-30 ref|NP_388814.1| similar to two-component response regulator [Yh... 132 5e-30 ref|ZP_00060114.1| COG2197: Response regulator containing a CheY... 130 1e-29 ref|NP_978604.1| DNA-binding response regulator, LuxR family [Ba... 129 2e-29 ref|ZP_00110736.1| COG2197: Response regulator containing a CheY... 129 3e-29 >ref|NP_243079.1| two-component response regulator [Bacillus halodurans] pir||E83926 two-component response regulator BH2213 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05932.1| two-component response regulator [Bacillus halodurans] Length = 217 Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 113/186 (60%), Gaps = 6/186 (3%) Query: 7 FAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLTSSASRE 66 GEA +G+ AL ++E+ QPD+VL+D+ + +G++ K + + ++L+SSA RE Sbjct: 30 IVGEAEDGEAALTLVEKVQPDIVLMDVIMPGINGIEATKKIKQKWPTVHVVVLSSSAERE 89 Query: 67 DFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDPGLMEDKM-RMSGNSPTDE--- 122 + A + +GY LKE PE L I+ V G P + + + RM+G+ +E Sbjct: 90 SVIPALQAGANGYQLKEVDPEMLAETIRAVCSGESRLHPKVTKHVLTRMNGDESEEEKRL 149 Query: 123 --LTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRTQAALYANAV 180 LT +EK+VL EL +G SN+EIAS L ISE TVK HVS I KL V DRTQAAL+A Sbjct: 150 RDLTNREKDVLRELAKGQSNKEIASELHISEKTVKTHVSNIFWKLDVHDRTQAALFAIKY 209 Query: 181 GLTKYE 186 G+++Y+ Sbjct: 210 GISEYD 215 >ref|NP_388814.1| similar to two-component response regulator [YhcY] [Bacillus subtilis] pir||F69824 two-component response regulator [YhcY] homolog yhcZ - Bacillus subtilis emb|CAA74433.1| hypothetical protein [Bacillus subtilis] emb|CAB12761.1| yhcZ [Bacillus subtilis subsp. subtilis str. 168] Length = 214 Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 108/182 (59%), Gaps = 7/182 (3%) Query: 2 QSNLHFAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLTS 61 Q ++ GEA G EAL +IEET+PDLVL+DL + + G+ IK A + + I+LTS Sbjct: 23 QDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVLTS 82 Query: 62 SASREDFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDPGLMEDKMRMSGNSPTD 121 + +E + A + Y LK+ PEEL+ Q VH G +M + N Sbjct: 83 YSDQEHVIPALQAGAKAYQLKDTEPEELVKTRQ-VHGGEYKLSTAIMPHVLTHMKNQHDP 141 Query: 122 E------LTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRTQAAL 175 E LT +EK+VL E+ G SN+EIA+ LFISE TVK HVS +LAKL+VADRTQAAL Sbjct: 142 EKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAAL 201 Query: 176 YA 177 +A Sbjct: 202 FA 203 >ref|ZP_00060114.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Clostridium thermocellum ATCC 27405] Length = 216 Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 114/192 (59%), Gaps = 8/192 (4%) Query: 1 MQSNLHFAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLT 60 ++ ++ +A+NG+EA+ + +E QPD+VL+D+ + +GL I+ ++ L K I+LT Sbjct: 25 LEKDIAVVAQASNGEEAVKLAKECQPDVVLMDINMPGMNGLQAIEKIKAENLAVKIIVLT 84 Query: 61 SSASREDFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDPGLMEDKMRMSGNSPT 120 +E K ++ +GYVLK+A L+ AI+ V++G Y + ++ +R Sbjct: 85 IHEDKEYLFKTLQMGAEGYVLKDADSTVLVEAIRSVNRGESYIQSNMTKELVREFNRVTV 144 Query: 121 DE--------LTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRTQ 172 +E LTP+E EVL + QG N+EIA RLFISE TVK HVS I KL V+DRTQ Sbjct: 145 NEKAKKTENDLTPRELEVLELIAQGLINKEIAKRLFISEKTVKNHVSNIFKKLNVSDRTQ 204 Query: 173 AALYANAVGLTK 184 AA+YA +TK Sbjct: 205 AAIYAYKHNITK 216 >ref|NP_978604.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC 10987] gb|AAS41212.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC 10987] Length = 211 Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 109/181 (60%), Gaps = 5/181 (2%) Query: 7 FAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLTSSASRE 66 GEA NG++AL ++ +PD+VL+DL + G++ K + K ++L+S + ++ Sbjct: 30 IVGEAENGEDALTFVQTKRPDVVLMDLSMPKMDGIEATKRIKQYDETIKILILSSFSEQD 89 Query: 67 DFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDPG-----LMEDKMRMSGNSPTD 121 L A E DGY LKE PE+L+ +I VH+G + P L ++ +P Sbjct: 90 YVLPALEAGADGYQLKEVQPEQLVASIIAVHEGNTNFHPKVTPALLGRSVVKKEKENPFS 149 Query: 122 ELTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRTQAALYANAVG 181 LT +E+EVL E+ QG SN+EIA+ L I+E TVK HVS +LAKL+V DRTQAALYA G Sbjct: 150 MLTKREQEVLREIAQGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209 Query: 182 L 182 + Sbjct: 210 V 210 >ref|ZP_00110736.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Nostoc punctiforme] Length = 221 Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/189 (40%), Positives = 114/189 (60%), Gaps = 10/189 (5%) Query: 1 MQSNLHFAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLT 60 ++S+L GEA NG++A+ ++ E QPD+VL+D+++ G+ K + R +K ++LT Sbjct: 24 LESDLEIVGEAENGEQAINLVAEFQPDVVLLDIRMPIMDGVAATKEIQKRFSKTKILVLT 83 Query: 61 SSASREDFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDPGLMEDKM-RMSGNSP 119 + E A + GY+LK+ EEL AI+ V+KG PG+++ + + S +P Sbjct: 84 TFDDDEYVSAALQNGAMGYLLKDTPSEELAVAIRAVYKGYTQLGPGIVKKLLTQFSNGTP 143 Query: 120 T---------DELTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADR 170 +ELTP+EKEVL + GASNREIA L+ISE TVK HV+ IL L + DR Sbjct: 144 IHSTPVPSTLNELTPREKEVLRLIATGASNREIAQELYISEGTVKNHVTNILNTLNLRDR 203 Query: 171 TQAALYANA 179 TQAA++AN Sbjct: 204 TQAAIWANT 212 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.132 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 249,153,589 Number of extensions: 9332722 Number of successful extensions: 35663 Number of sequences better than 1.0e-05: 1011 Number of HSP's gapped: 35910 Number of HSP's successfully gapped: 1012 Length of query: 190 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 71 Effective length of database: 434,140,797 Effective search space: 30823996587 Effective search space used: 30823996587 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 122 (51.6 bits)