BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0046.p (246 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_834941.1| Chain length regulator (capsular polysaccharide... 120 3e-26 ref|NP_244536.1| capsular polysaccharide biosynthesis [Bacillus ... 116 5e-25 ref|NP_981691.1| chain length determinant protein [Bacillus cere... 115 6e-25 ref|NP_391507.1| similar to capsular polysaccharide biosynthesis... 115 8e-25 ref|NP_693823.1| capsular polysaccharide biosynthesis [Oceanobac... 112 8e-24 >ref|NP_834941.1| Chain length regulator (capsular polysaccharide biosynthesis) [Bacillus cereus ATCC 14579] gb|AAP12142.1| Chain length regulator (capsular polysaccharide biosynthesis) [Bacillus cereus ATCC 14579] Length = 247 Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 1/227 (0%) Query: 7 DYINLIKKRLWLIIVFVLISCATTFYVSKNFVMPVYSASGQLLXXXXXXXXXXXXXXXXX 66 + +++KKRL +I+V + + +S F+ P+Y +S Q+L Sbjct: 9 ELFHILKKRLAMILVIAFGAAIVSAIISFFFMTPIYQSSTQILVNQKKQEGAAIQLGEIQ 68 Query: 67 XXXXXIESYKEILKSPTIMKSVVAEHPEFNLTEQALAGKLQIKSSEKSQVINLSVQDESY 126 +YK I+KSP I+ V E N+T QAL K+ I + + SQVI+++ +D+ Sbjct: 69 SNIQLTNTYKVIIKSPVILDRV-NEKLNLNMTAQALTKKINIANEKDSQVISVTAEDKDP 127 Query: 127 TKAATIVNAVSQTFIRSLPALMNLDNVTFLTPADPADAPGPVNSGSTMNIIISFVVSLMA 186 A I NA + F + +MN+DNVT L+ A+ A+ P+ +N+ I+FVV LMA Sbjct: 128 KLARDIANATADVFKDEVAKIMNVDNVTVLSKAEVAENQSPIKPRPMLNVAIAFVVGLMA 187 Query: 187 AIGIILLLETLNGTLRTEKEAEFDLGLPVIASIPTIRKRDLGKSANA 233 ++G+ LLE L+ T++ E++ E LGLPV+ + + + + ++A Sbjct: 188 SVGLAFLLEYLDNTVKKEEDVENLLGLPVLGIVARMDEETMNVKSHA 234 >ref|NP_244536.1| capsular polysaccharide biosynthesis [Bacillus halodurans] pir||E84108 capsular polysaccharide biosynthesis BH3669 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07388.1| capsular polysaccharide biosynthesis [Bacillus halodurans] Length = 232 Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 115/218 (52%), Gaps = 2/218 (0%) Query: 12 IKKRLWLIIVFVLISCATTFYVSKNFVMPVYSASGQLLXXXXXXXXXXXXXXXXXXXXXX 71 I +RL LII +++ +VS + P+Y +S Q+L Sbjct: 14 IMRRLKLIIALPVLAVCLAGFVSFFLLTPIYQSSTQILVNHSNDNQSFNSQDIRTNIDL- 72 Query: 72 IESYKEILKSPTIMKSVVAEHPEFNLTEQALAGKLQIKSSEKSQVINLSVQDESYTKAAT 131 I +Y I+KSP I+ V+ ++ + T L +LQI S SQV+N++V+ E A Sbjct: 73 INTYSVIIKSPAILDKVI-DNLQLEDTYSQLNERLQINSENNSQVVNITVKHEKPAMAVA 131 Query: 132 IVNAVSQTFIRSLPALMNLDNVTFLTPADPADAPGPVNSGSTMNIIISFVVSLMAAIGII 191 I N ++ F + +MN+DNV+ L+ A+ ++P PV+ +N+ I+FVV LM A+GI Sbjct: 132 IANEIALVFQNEIVEIMNVDNVSILSTAELGESPSPVSPNPMLNMAIAFVVGLMGAVGIA 191 Query: 192 LLLETLNGTLRTEKEAEFDLGLPVIASIPTIRKRDLGK 229 LL+ L+ T++ EKE E L LPV+ IP K + K Sbjct: 192 FLLDYLDTTIKDEKEVEDVLELPVLGVIPNFEKSEEKK 229 >ref|NP_981691.1| chain length determinant protein [Bacillus cereus ATCC 10987] gb|AAS44299.1| chain length determinant protein [Bacillus cereus ATCC 10987] Length = 247 Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 113/211 (53%), Gaps = 1/211 (0%) Query: 7 DYINLIKKRLWLIIVFVLISCATTFYVSKNFVMPVYSASGQLLXXXXXXXXXXXXXXXXX 66 + +++KKRL +I+V + +S F+ P+Y +S Q+L Sbjct: 9 ELFHILKKRLAMILVIAFGVAIVSAIISFFFMTPIYQSSTQILVNQKKQEGAAIQYNEVQ 68 Query: 67 XXXXXIESYKEILKSPTIMKSVVAEHPEFNLTEQALAGKLQIKSSEKSQVINLSVQDESY 126 +YK I+KSP I++ V E N+T Q L K+++ + + SQV+ L QD+ Sbjct: 69 TNVQLTNTYKVIIKSPVILEQV-KEMQGLNITIQELNKKIEVVNEKDSQVVTLMAQDQDP 127 Query: 127 TKAATIVNAVSQTFIRSLPALMNLDNVTFLTPADPADAPGPVNSGSTMNIIISFVVSLMA 186 A I N ++ F + +MN+DNVT L+ A+ A+ P+ +N+ I+FVV +MA Sbjct: 128 RLARDIANTTAEVFKGEIAKIMNVDNVTVLSKAEVAENQSPIKPRPMLNVAIAFVVGVMA 187 Query: 187 AIGIILLLETLNGTLRTEKEAEFDLGLPVIA 217 A+G+ LLE L+ T++ E++ E LGLPV+ Sbjct: 188 AVGLAFLLEYLDNTVKKEEDVENLLGLPVLG 218 >ref|NP_391507.1| similar to capsular polysaccharide biosynthesis [Bacillus subtilis] sp|P96715|YWQC_BACSU Hypothetical protein ywqC pir||F70066 capsular polysaccharide biosynthesis homolog ywqC - Bacillus subtilis emb|CAB07455.1| ywqC [Bacillus subtilis] emb|CAB15643.1| ywqC [Bacillus subtilis subsp. subtilis str. 168] Length = 248 Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 118/216 (54%), Gaps = 1/216 (0%) Query: 7 DYINLIKKRLWLIIVFVLISCATTFYVSKNFVMPVYSASGQLLXXXXXXXXXXXXXXXXX 66 + ++ + KR+ LI++ + A +S + P+Y S Q+L Sbjct: 9 EILSTLTKRILLIMIVTAAATAAGGLISFFALTPIYENSTQILVNQSKNERKEVQFNDVQ 68 Query: 67 XXXXXIESYKEILKSPTIMKSVVAEHPEFNLTEQALAGKLQIKSSEKSQVINLSVQDESY 126 I +Y I+KSP I+ V+ E ++T Q L K+ + S + SQV+N+SV+DE+ Sbjct: 69 TNLQLINTYNVIIKSPAILDEVIKEMG-LSMTSQELNDKITVSSEQDSQVVNISVRDENA 127 Query: 127 TKAATIVNAVSQTFIRSLPALMNLDNVTFLTPADPADAPGPVNSGSTMNIIISFVVSLMA 186 AA I N ++ F + ++MN+DNV+ L+ A+ ++ P PV+ +NI I+F L Sbjct: 128 ETAAHIANTIASVFQDKITSIMNVDNVSILSKAEVSEHPSPVSPKPLLNIAIAFAAGLAG 187 Query: 187 AIGIILLLETLNGTLRTEKEAEFDLGLPVIASIPTI 222 +IG+ LLE L+ T+++E++ E L +PV+ ++ TI Sbjct: 188 SIGLAFLLEHLDNTIKSEEQLESLLDIPVLGTVSTI 223 >ref|NP_693823.1| capsular polysaccharide biosynthesis [Oceanobacillus iheyensis HTE831] dbj|BAC14857.1| capsular polysaccharide biosynthesis [Oceanobacillus iheyensis HTE831] Length = 255 Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 7/236 (2%) Query: 11 LIKKRLWLIIVFVLISCATTFYVSKNFVMPVYSASGQLLXXXXXXXXXXX-XXXXXXXXX 69 +IKKRL LI F+L++ +S + P Y S Q + Sbjct: 13 VIKKRLLLIFTFILVAALAAAIISYFVMTPKYENSSQFIVNQSNQEQANQFTQTDIRTNV 72 Query: 70 XXIESYKEILKSPTIMKSVVAEHPEFNLTEQALAGKLQIKSSEKSQVINLSVQDESYTKA 129 I +Y I+KSP I+ +V E + +LT L+ K+ + S E SQV+ ++ D A Sbjct: 73 EIINTYNVIIKSPAILDTVATEL-QLDLTSSQLSEKISVASEENSQVVTVTATDPDPLLA 131 Query: 130 ATIVNAVSQTFIRSLPALMNLDNVTFLTPADPADAPGPVNSGSTMNIIISFVVSLMAAIG 189 I N Q F +P +MN+DNV+ L+ A+ A+ P PV +NI I+ V+ M +G Sbjct: 132 TDIANTTVQVFQDEIPDIMNVDNVSVLSQAELAEEPSPVAPNPILNIAIAMVLGAMVGVG 191 Query: 190 IILLLETLNGTLRTEKEAEFDLGLPVIASIPTIRKRDL-----GKSANANARVGEG 240 I LLE L+ T++TE++ E L +PV+ I + ++D+ G++++ N V G Sbjct: 192 IAFLLEYLDNTIKTEQDIEKQLNIPVLGVISHMDEKDVRNEQFGRASSVNKSVRSG 247 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.132 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 287,938,294 Number of extensions: 9590348 Number of successful extensions: 29479 Number of sequences better than 1.0e-05: 81 Number of HSP's gapped: 29441 Number of HSP's successfully gapped: 81 Length of query: 246 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 124 Effective length of database: 425,995,500 Effective search space: 52823442000 Effective search space used: 52823442000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)