BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0045.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00038044.1| COG0489: ATPases involved in chromosome parti... 148 1e-34 gb|EAC91354.1| unknown [environmental sequence] 146 3e-34 ref|NP_981690.1| capsular exopolysaccharide family protein [Baci... 143 3e-33 ref|NP_834940.1| Tyrosine-protein kinase (capsular polysaccharid... 141 1e-32 ref|NP_834942.1| Tyrosine-protein kinase (capsular polysaccharid... 140 2e-32 >ref|ZP_00038044.1| COG0489: ATPases involved in chromosome partitioning [Enterococcus faecium] Length = 232 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 125/204 (61%), Gaps = 1/204 (0%) Query: 7 SLITDLNPSSHISESFRSLRTYIRQLGLLKGSGGQALLFTSAEGGEGKTTILSNLAVSFV 66 SLIT NPSS ISE +R++RT I Q G + ++ TS+ GEGK+T +N+AV F Sbjct: 16 SLITLTNPSSPISEQYRTIRTNI-QFASAAGQQIKTIVVTSSGPGEGKSTTAANIAVVFA 74 Query: 67 QDGKKVVVVDCNLRHPGLHSVFEVEGSHGLAAYLGGREEVKDIAVYGNLANLAVIPAGIT 126 + G++V++VD +LR P ++ F++ + GL+ L V D+ + NL+++P+G Sbjct: 75 KSGQRVLLVDADLRKPVVYKTFQLNNASGLSTALSSLGSVVDVIQRTPVENLSILPSGPK 134 Query: 127 SVSPPDLLGSDKMAALLEELKSSFDLILLDAPQAVEFSDARILAPLSDGLIIVARHGKTK 186 +P +LL S +M +L E + FD+++ D P V +DA+I++ +DG ++V R ++ Sbjct: 135 PPNPSELLSSPRMDQILAEARQLFDVVIFDMPPVVAVTDAQIMSSKTDGTLLVVRENTSR 194 Query: 187 RESLKKLKGLMEQTGVKILGIAMN 210 +ESL K KGL++ ++LG+ N Sbjct: 195 KESLNKAKGLLDMVQARVLGVVYN 218 >gb|EAC91354.1| unknown [environmental sequence] Length = 236 Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 128/210 (60%), Gaps = 2/210 (0%) Query: 1 MLRLNKSLITDLNPSSHISESFRSLRTYIRQLGLLKGSGGQALLFTSAEGGEGKTTILSN 60 +L+L + LIT +P S +SE++RSLRT + + S Q LL +SA GEGKTT ++N Sbjct: 3 VLKLQRRLITHEDPKSPVSEAYRSLRTSL--MYTESESNCQILLVSSAGPGEGKTTSIAN 60 Query: 61 LAVSFVQDGKKVVVVDCNLRHPGLHSVFEVEGSHGLAAYLGGREEVKDIAVYGNLANLAV 120 LA+++ GKK +++D +LR P +H+VF+++ + GL ++L DI ++ NL V Sbjct: 61 LAITYANLGKKTLLIDSDLRKPVIHNVFKLDKTPGLTSFLSKNSSYADILNKTDIKNLDV 120 Query: 121 IPAGITSVSPPDLLGSDKMAALLEELKSSFDLILLDAPQAVEFSDARILAPLSDGLIIVA 180 I +GI +P +LL S+ M +E ++ +D++L D+P + +D +L D ++V Sbjct: 121 ITSGIIPPNPSELLASNSMQKFIEMIREEYDVVLFDSPPLIAVTDPYVLMKYVDQFVLVV 180 Query: 181 RHGKTKRESLKKLKGLMEQTGVKILGIAMN 210 R G T+R +L+++ ++ QT I G+ MN Sbjct: 181 RSGVTQRGALQRVLEVVGQTDFNITGVIMN 210 >ref|NP_981690.1| capsular exopolysaccharide family protein [Bacillus cereus ATCC 10987] gb|AAS44298.1| capsular exopolysaccharide family protein [Bacillus cereus ATCC 10987] Length = 233 Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 77/208 (37%), Positives = 119/208 (57%), Gaps = 2/208 (0%) Query: 3 RLNKSLITDLNPSSHISESFRSLRTYIRQLGLLKGSGGQALLFTSAEGGEGKTTILSNLA 62 R + LIT P S ISE +R++RT I + K +L+ TSA EGKTT +N+A Sbjct: 13 RQRRQLITHQQPKSPISEQYRNIRTNIEFAAVDKNL--HSLMVTSANPSEGKTTTTANMA 70 Query: 63 VSFVQDGKKVVVVDCNLRHPGLHSVFEVEGSHGLAAYLGGREEVKDIAVYGNLANLAVIP 122 V F Q GKKV+++D ++R P +H +F+V+ GL L E ++ ++ NL + Sbjct: 71 VVFAQQGKKVLLIDADMRKPAMHQMFQVDNIFGLTNVLTHSERLEKCVQTTSVDNLHFLA 130 Query: 123 AGITSVSPPDLLGSDKMAALLEELKSSFDLILLDAPQAVEFSDARILAPLSDGLIIVARH 182 G +P +LLGS M LL + S++DL++ D P + +DA+I+A + D I+V R Sbjct: 131 CGPIPPNPAELLGSKSMQELLAQAYSTYDLVIFDLPPILAVTDAQIMANVCDASILVVRS 190 Query: 183 GKTKRESLKKLKGLMEQTGVKILGIAMN 210 T +E+ K KGL+E K+LG+ +N Sbjct: 191 ESTDKETAVKAKGLLESAKGKLLGVVLN 218 >ref|NP_834940.1| Tyrosine-protein kinase (capsular polysaccharide biosynthesis) [Bacillus cereus ATCC 14579] gb|AAP12141.1| Tyrosine-protein kinase (capsular polysaccharide biosynthesis) [Bacillus cereus ATCC 14579] Length = 233 Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 118/208 (56%), Gaps = 2/208 (0%) Query: 3 RLNKSLITDLNPSSHISESFRSLRTYIRQLGLLKGSGGQALLFTSAEGGEGKTTILSNLA 62 R + LI P S ISE +R++RT I + +LL TSA EGKTT +N+A Sbjct: 13 RQRRQLIAHQQPKSPISEQYRNIRTNIEFAAI--DMNLHSLLVTSANPSEGKTTTTANMA 70 Query: 63 VSFVQDGKKVVVVDCNLRHPGLHSVFEVEGSHGLAAYLGGREEVKDIAVYGNLANLAVIP 122 V F Q GKKV+++D ++R P +H +F+V+ GL L E ++ ++ NL+ + Sbjct: 71 VVFAQQGKKVLLIDADMRKPAMHQMFQVDNIFGLTNVLTHSERLEKCVQTTSIDNLSFLA 130 Query: 123 AGITSVSPPDLLGSDKMAALLEELKSSFDLILLDAPQAVEFSDARILAPLSDGLIIVARH 182 G +P +LLGS M LL + S +DL++ D P + +DA+I+A + D I+V R Sbjct: 131 CGPIPPNPAELLGSKSMKELLGQAYSMYDLVIFDMPPILAVTDAQIMANVCDASILVVRS 190 Query: 183 GKTKRESLKKLKGLMEQTGVKILGIAMN 210 T++E+ K KGL+E K+LG+ +N Sbjct: 191 ESTEKETAVKAKGLLESANGKLLGVVLN 218 >ref|NP_834942.1| Tyrosine-protein kinase (capsular polysaccharide biosynthesis) [Bacillus cereus ATCC 14579] gb|AAP12143.1| Tyrosine-protein kinase (capsular polysaccharide biosynthesis) [Bacillus cereus ATCC 14579] Length = 227 Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 127/208 (61%), Gaps = 2/208 (0%) Query: 6 KSLITDLNPSSHISESFRSLRTYIRQLGLLKGSGGQALLFTSAEGGEGKTTILSNLAVSF 65 + LIT P S I+E +R++RT I + + ++++ TSA+ G+GKTT +SNLAV F Sbjct: 13 RQLITHKEPKSRITEQYRNIRTNIEFTSV--DNHVRSIIVTSADPGDGKTTTISNLAVVF 70 Query: 66 VQDGKKVVVVDCNLRHPGLHSVFEVEGSHGLAAYLGGREEVKDIAVYGNLANLAVIPAGI 125 Q GKKV+++ +LR P + ++F + S+GL L G+ ++ ++ N+ ++ AG Sbjct: 71 GQQGKKVLLIGADLRKPTIQNLFAIHSSNGLTNLLSGQAKLMQCIQKTDIENVYLMAAGP 130 Query: 126 TSVSPPDLLGSDKMAALLEELKSSFDLILLDAPQAVEFSDARILAPLSDGLIIVARHGKT 185 +P +LLGS M L E + FD+IL+D P + +DA+ILA DG+++V R KT Sbjct: 131 IPPNPAELLGSRAMDEALLEAYNMFDIILIDTPPVLAVTDAQILANKCDGIVLVVRSEKT 190 Query: 186 KRESLKKLKGLMEQTGVKILGIAMNQTR 213 +++ + K K ++++ KILG+ +N R Sbjct: 191 EKDKIVKAKQILDKASGKILGVVLNDKR 218 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.136 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 298,059,872 Number of extensions: 11864178 Number of successful extensions: 45601 Number of sequences better than 1.0e-05: 372 Number of HSP's gapped: 45546 Number of HSP's successfully gapped: 372 Length of query: 213 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 93 Effective length of database: 431,425,698 Effective search space: 40122589914 Effective search space used: 40122589914 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)