BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0035.p (380 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_357053.1| AGR_L_2541p [Agrobacterium tumefaciens] >gi|179... 130 6e-29 ref|ZP_00163058.1| hypothetical protein Avar086901 [Anabaena var... 127 4e-28 ref|ZP_00033785.1| COG0438: Glycosyltransferase [Burkholderia fu... 126 7e-28 ref|ZP_00106707.1| COG0438: Glycosyltransferase [Nostoc punctifo... 126 8e-28 ref|NP_487739.1| similar to glycosyltransferase [Nostoc sp. PCC ... 122 1e-26 >ref|NP_357053.1| AGR_L_2541p [Agrobacterium tumefaciens] ref|NP_534056.1| glycosyltransferase [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||D98289 hypothetical protein AGR_L_2541 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AF2994 glycosyltransferase Atu3560 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK89838.1| AGR_L_2541p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL44372.1| glycosyltransferase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 382 Score = 130 bits (326), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 138/283 (48%), Gaps = 15/283 (5%) Query: 99 DCVHTNSLKSAFYGAVAAKKAGVPLIWHIRDHIGAPYLKPVVAKAIRLLSRLLPNGVIAN 158 D + NS K+ F A+AAK + PL+W + D + +A +R+ V N Sbjct: 95 DVICANSQKALFVCALAAKLSRRPLVWILHDIVTDTAFSATNRRASLAFARIFARLVAVN 154 Query: 159 SHSTLNAL--ELPRTKKTLVVYSAF----AKAIGEGIGKREQQK-----DFNVLLVGRLA 207 S T A K +VY+ F AK G+ R + + V L GRL+ Sbjct: 155 SEETGRAFIEAGGEADKVRIVYNGFDPAKAKLHDAGMAARLRAELGLGPQPLVGLFGRLS 214 Query: 208 QWKGQHIVLEAAKAFKNDSRVKFWLAGDALFGEEAYKNELIQKIQQDELTN-VSLLGHVD 266 +WKGQH+ L+A A + V+ + G ALFG+EAY+ + ++ + L V LG Sbjct: 215 EWKGQHVFLDALAAMEG---VQAVIVGGALFGQEAYEARIREQASRLGLDGRVRFLGFRS 271 Query: 267 DIQGLMSKADLLIHTSITPEPFGQVIVEGMAAGLPVIASNXXXXXXXXXXXXXXLLIQPG 326 D+ LM+ D++ HTSI EPFG+V+VE M G PV+A+ LL+ PG Sbjct: 272 DVPELMASMDVVAHTSIVAEPFGRVVVEAMMCGRPVVATRGGGVTEIIRDGETGLLVPPG 331 Query: 327 DPVVLADSITWMLNHPEDRKRMADSGMKRVKEHFVIENTVKDI 369 D LA ++ +L+ P +R+ SG + V + F ++ T + + Sbjct: 332 DASALAAALGTILSDPALAQRLGQSGREDVSDRFSLQETCRSV 374 >ref|ZP_00163058.1| hypothetical protein Avar086901 [Anabaena variabilis ATCC 29413] Length = 378 Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 134/287 (46%), Gaps = 13/287 (4%) Query: 94 KQEKVDCVHTNSLKSAFYGAVAAKKAGVPLIWHIRDHIGAPYLKPVVAKAIRLLSRLLPN 153 K + D ++ N+ K+ GA+A+ A PL++H+ D + + + L+ + Sbjct: 87 KAREYDVIYANTQKALVVGAIASFIARRPLVYHLHDILSPEHFSQTNLRVAVNLANRFAS 146 Query: 154 GVIANSHSTLNALELP--RTKKTLVVYSAF----AKAIGEGIGKREQ----QKDFNVLLV 203 VIANS ++ A R + T V+Y+ F + I K Q +F V Sbjct: 147 LVIANSQASQTAFIQAGGRAELTTVIYNGFDINLYQTAASDISKLRQYLGIANNFVVGHF 206 Query: 204 GRLAQWKGQHIVLEAAKAFKNDSRVKFWLAGDALFGEEAYKNELIQKIQQDELTN-VSLL 262 RL+ WKGQHI+++A + +V L GDALFGE+ Y EL Q+I + L N V L Sbjct: 207 SRLSPWKGQHILIDALA--QCPPQVTAILVGDALFGEQEYVKELHQQITRLGLENRVRFL 264 Query: 263 GHVDDIQGLMSKADLLIHTSITPEPFGQVIVEGMAAGLPVIASNXXXXXXXXXXXXXXLL 322 G DI LM+ DL+ HTS PEPFG+VIVE M G PV+A+ L Sbjct: 265 GFRADIPQLMAACDLVAHTSTAPEPFGRVIVEAMLCGKPVVAAKAGGAMELVEHGVNGFL 324 Query: 323 IQPGDPVVLADSITWMLNHPEDRKRMADSGMKRVKEHFVIENTVKDI 369 PG+ LAD I +A + + F ++N + I Sbjct: 325 TTPGESQELADIINTCFQEKHTTATIASNAKAIASQRFSVQNINQQI 371 >ref|ZP_00033785.1| COG0438: Glycosyltransferase [Burkholderia fungorum] Length = 961 Score = 126 bits (317), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 140/290 (48%), Gaps = 17/290 (5%) Query: 94 KQEKVDCVHTNSLKSAFYGAVAAKKAGVPLIWHIRDHIGAPYLKPVVAKAIRLLSRLLPN 153 + K D ++ N+ ++ GA+A K A P++WH+RD + + I+ +RL Sbjct: 662 RARKADVIYANTQRAMVIGALAGKLARRPVVWHLRDIVSPEHFGGKQLAIIKWCARLGLT 721 Query: 154 GVIANSHSTLNAL-ELPR--TKKTLVVYSAFAKAIGEGIGKREQ----------QKDFNV 200 VIANS ++ A EL + K+ VV++ + A + + Q + F V Sbjct: 722 HVIANSAASARAFAELTQFDEKRIDVVFNGISAAPFDALRTVPQATLRKRLGLPEDAFLV 781 Query: 201 LLVGRLAQWKGQHIVLEAAKAFKNDSRVKFWLAGDALFGEEAYKNELIQKIQQDELT-NV 259 RLA+WKGQH++LEA + ++ L G LFGEE Y+ EL + L V Sbjct: 782 GSFSRLARWKGQHVLLEA---MVLNPQMHAVLVGAPLFGEEQYEIELHAFVAAHSLGGRV 838 Query: 260 SLLGHVDDIQGLMSKADLLIHTSITPEPFGQVIVEGMAAGLPVIASNXXXXXXXXXXXXX 319 LG DI M D ++HTSITPEPFG+VIVEGM A PV+A+ Sbjct: 839 HFLGFQHDIAACMCAVDAVVHTSITPEPFGRVIVEGMLAQRPVVAARAGGVLEIIDDYEN 898 Query: 320 XLLIQPGDPVVLADSITWMLNHPEDRKRMADSGMKRVKEHFVIENTVKDI 369 +L P D LAD++ + ++ E R R+ +G + F V+ + Sbjct: 899 GVLCTPADAHGLADTLAELRSNDELRNRLVRNGYQTALSRFGTATYVEGV 948 >ref|ZP_00106707.1| COG0438: Glycosyltransferase [Nostoc punctiforme] Length = 379 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 95/281 (33%), Positives = 137/281 (48%), Gaps = 15/281 (5%) Query: 92 ILKQEKVDCVHTNSLKSAFYGAVAAKKAGVPLIWHIRDHIGAPYLKPVVAK-AIRLLSRL 150 I K + D ++ N+ K+ GA+A+ + PL++H+ D + + + AI L +R Sbjct: 85 IKKAREYDLIYANTQKALVVGALASFFSRRPLVYHLHDILSTEHFSQTNLRIAINLANRC 144 Query: 151 LPNGVIANSHSTLNALELP--RTKKTLVVYSAFAKAIGE----GIGKREQ----QKDFNV 200 + VIANS ++ A R+ VVY+ F I + GI + +Q Q F V Sbjct: 145 -ASLVIANSQASKTAFIQAGGRSDIVEVVYNGFDLKIYQTDEPGINQLQQKLGLQGKFVV 203 Query: 201 LLVGRLAQWKGQHIVLEAAKAFKNDSRVKFWLAGDALFGEEAYKNELIQKIQQDELTN-V 259 RLA WKGQHI+++A K V L GDALFGE+ Y +L +++ L N V Sbjct: 204 GHFSRLAPWKGQHILIDALA--KCPPEVTVILVGDALFGEQDYAQKLHKQVTDLGLENRV 261 Query: 260 SLLGHVDDIQGLMSKADLLIHTSITPEPFGQVIVEGMAAGLPVIASNXXXXXXXXXXXXX 319 LG DI LM+ DL+ HTS +PEPFG+VIVE M G PV+A+ Sbjct: 262 KFLGFRSDIPQLMAACDLVAHTSTSPEPFGRVIVEAMLCGKPVVAAKAGGVMELVEHGLN 321 Query: 320 XLLIQPGDPVVLADSITWMLNHPEDRKRMADSGMKRVKEHF 360 L+ PG+P LA I L E +A++ F Sbjct: 322 GFLVTPGEPQELAQVIITCLQETEITATIANNARTTASRRF 362 >ref|NP_487739.1| similar to glycosyltransferase [Nostoc sp. PCC 7120] pir||AD2268 hypothetical protein alr3699 [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB75398.1| ORF_ID:alr3699~similar to glycosyltransferase [Nostoc sp. PCC 7120] Length = 382 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 135/289 (46%), Gaps = 13/289 (4%) Query: 99 DCVHTNSLKSAFYGAVAAKKAGVPLIWHIRDHIGAPYLKPVVAKAIRLLSRLLPNGVIAN 158 D ++ N+ K+ GA+A+ A PL++H+ D + + + L+ + VIAN Sbjct: 92 DLIYANTQKALVVGAIASFIARRPLVYHLHDILSPEHFSQTNLRVAVNLANRFASLVIAN 151 Query: 159 SHSTLNALELP--RTKKTLVVYSAF----AKAIGEGIGKREQQ----KDFNVLLVGRLAQ 208 S ++ A R + T V+Y+ F K I K QQ +F V RL+ Sbjct: 152 SQASQTAFIQAGGRAELTKVIYNGFDINLYKTSPSDISKLRQQLGVANNFVVGHFSRLSP 211 Query: 209 WKGQHIVLEAAKAFKNDSRVKFWLAGDALFGEEAYKNELIQKIQQDELTN-VSLLGHVDD 267 WKGQHI+++A + +V L GDALFGE+ Y EL Q+I + L N V LG D Sbjct: 212 WKGQHILIDALA--QCPPQVTAILVGDALFGEQDYVKELHQQITRLGLENRVKFLGFRAD 269 Query: 268 IQGLMSKADLLIHTSITPEPFGQVIVEGMAAGLPVIASNXXXXXXXXXXXXXXLLIQPGD 327 I LM+ DL+ HTS PEPFG+VIVE M G PV+A+ L PG+ Sbjct: 270 IPQLMAACDLVAHTSTAPEPFGRVIVEAMLCGKPVVAAKAGGAMELVEHGVNGFLTTPGE 329 Query: 328 PVVLADSITWMLNHPEDRKRMADSGMKRVKEHFVIENTVKDIVDYYKGL 376 LA+ I + + +A + + F + + I + L Sbjct: 330 SQELANIINTCIEDTQKTATIASNAQAIASQRFDVVTINQQIAETLSSL 378 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 477,609,788 Number of extensions: 16873311 Number of successful extensions: 43329 Number of sequences better than 1.0e-05: 346 Number of HSP's gapped: 43416 Number of HSP's successfully gapped: 346 Length of query: 380 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 253 Effective length of database: 412,420,005 Effective search space: 104342261265 Effective search space used: 104342261265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)