BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0153.0029.p
         (88 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_644530.1| glucan 1,4-beta-glucosidase [Xanthomonas axonop...    65   4e-10
ref|ZP_00060906.1| hypothetical protein [Clostridium thermocellu...    63   2e-09
ref|NP_643385.1| glucan 1,4-beta-glucosidase [Xanthomonas axonop...    60   1e-08
ref|NP_638240.1| glucan 1,4-beta-glucosidase [Xanthomonas campes...    60   2e-08
ref|NP_639445.1| glucan 1,4-beta-glucosidase [Xanthomonas campes...    59   3e-08

>ref|NP_644530.1| glucan 1,4-beta-glucosidase [Xanthomonas axonopodis pv. citri str.
           306]
 gb|AAM39066.1| glucan 1,4-beta-glucosidase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 901

 Score = 65.1 bits (157), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 16/98 (16%)

Query: 5   PTVN----GLQGEYFKNMTLSGTPVLVRNDAVVNFNWRQAAPVSSL------------GV 48
           P+ N    GL+GEYF+N  LSG P LVR DA + F W + +P  +L              
Sbjct: 475 PSANSPERGLRGEYFRNRDLSGKPALVRVDAQIGFKWDRGSPTDNLLARGEAGPSEAVPA 534

Query: 49  DSFSIRWTGLIKPXXXXXXXXXXXXDDGIRVXXXGLTV 86
           D+FSIRW+G + P            DDG+R+   G  V
Sbjct: 535 DNFSIRWSGQLVPPTTGTYHLEAAADDGVRLYLDGKPV 572


>ref|ZP_00060906.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
          Length = 389

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 6   TVNGLQGEYFKNMTLSGTPVLVRNDAVVNFNWRQAAPVSSLGVDSFSIRWTGLIKPXXXX 65
           T +GL+GEY+ NM  S     VR D  ++F+W +  P  S+G D++S+RWTG ++P    
Sbjct: 100 TGSGLRGEYYNNMDFSRF-QFVRIDPCIDFDWGEGTPDQSIGKDTYSVRWTGKVEPRYSE 158

Query: 66  XXXXXXXXDDGIRVXXXGL 84
                   DDG+R+   G+
Sbjct: 159 TYTFYTVTDDGVRLWVDGV 177


>ref|NP_643385.1| glucan 1,4-beta-glucosidase [Xanthomonas axonopodis pv. citri str.
           306]
 gb|AAM37921.1| glucan 1,4-beta-glucosidase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 886

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 9   GLQGEYFKNMTLSGTPVLVRNDAVVNFNWRQAAPVSSLGVDSFSIRWTGLIKP 61
           GL+GEYF N+ +SG   +VR D  V+FNW Q AP   +  D +++RW+G + P
Sbjct: 459 GLRGEYFDNVDMSGAARVVRQDRTVSFNWDQVAPAKGVPADRYAVRWSGELLP 511


>ref|NP_638240.1| glucan 1,4-beta-glucosidase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gb|AAM42164.1| glucan 1,4-beta-glucosidase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 888

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 9   GLQGEYFKNMTLSGTPVLVRNDAVVNFNWRQAAPVSSLGVDSFSIRWTGLIKP 61
           GL+GEYF N+ L G P + R D  ++FNW Q +P   +  D +++RW+G + P
Sbjct: 461 GLRGEYFDNVELEGAPRVTRQDRAISFNWDQVSPAKGVPADRYAVRWSGELLP 513


>ref|NP_639445.1| glucan 1,4-beta-glucosidase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gb|AAM43327.1| glucan 1,4-beta-glucosidase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 896

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 8   NGLQGEYFKNMTLSGTPVLVRNDAVVNFNWRQAAPV------------SSLGVDSFSIRW 55
           NGL G+YF+   L+G PVL R D  + F W + AP              +LG D FS+RW
Sbjct: 477 NGLTGDYFRGRALAGQPVLTRIDPRIAFRWDRNAPTDDAVGRGELQPGQALGKDDFSVRW 536

Query: 56  TGLIKPXXXXXXXXXXXXDDGIRVXXXG 83
            G + P            DDG+R+   G
Sbjct: 537 HGQLLPPVSGNYELQIAADDGVRLYLDG 564


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 103,405,386
Number of extensions: 3189951
Number of successful extensions: 5017
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 5015
Number of HSP's successfully gapped: 19
Length of query: 88
Length of database: 757,237,578
Length adjustment: 57
Effective length of query: 31
Effective length of database: 602,476,935
Effective search space: 18676784985
Effective search space used: 18676784985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)