BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0017.p (329 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244513.1| oligopeptide ABC transporter (ATP-binding prote... 435 e-121 ref|NP_693374.1| oligopeptide ABC transporter ATP-binding protei... 417 e-115 ref|NP_624050.1| ABC-type dipeptide/oligopeptide/nickel transpor... 396 e-109 ref|NP_658524.1| ABC_tran, ABC transporter [Bacillus anthracis A... 392 e-108 ref|NP_976579.1| oligopeptide ABC transporter, ATP-binding prote... 388 e-106 >ref|NP_244513.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||F84105 oligopeptide ABC transporter (ATP-binding protein) BH3646 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07365.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 329 Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust. Identities = 202/323 (62%), Positives = 259/323 (80%) Query: 5 ILKVEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNPPG 64 +L++++L THFFT+ GEVPAVDGV L ++ GE++G+VGESGCGKSVTSLSI++LVPNPPG Sbjct: 5 VLELDKLRTHFFTDQGEVPAVDGVSLRLHQGEIIGIVGESGCGKSVTSLSIMQLVPNPPG 64 Query: 65 KIVSGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLHRS 124 KI+SG + KG+D+V + K M+ IRG+ ++MIFQEPMTSLNPLFT+G Q+IE +R HR Sbjct: 65 KIMSGHVYFKGEDLVQVSPKRMKQIRGNDIAMIFQEPMTSLNPLFTIGNQLIEAIRNHRK 124 Query: 125 LSKKDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADEPT 184 ++K++AR AV ML +VGIPR + I EYPHQLSGGMRQRVMIAM++ C P++LIADEPT Sbjct: 125 MTKQEARKQAVTMLERVGIPRADEIASEYPHQLSGGMRQRVMIAMAMCCDPKVLIADEPT 184 Query: 185 TALDVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVRDI 244 TALDVTIQAQILDL+R LNE TA++LITHDLGVVAE+C RV VMYAG+VVEEG VR I Sbjct: 185 TALDVTIQAQILDLMRHLNEAHDTAILLITHDLGVVAELCNRVVVMYAGQVVEEGDVRMI 244 Query: 245 FKNPLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVMEICRQSL 304 K+P HPYT+GL++S+P++ E +RLYSIPG VP T GCRFA RC E C+ + Sbjct: 245 LKHPKHPYTKGLLKSLPKIHEQSKRLYSIPGVVPKPGTVGHGCRFAARCEVAFERCKTTA 304 Query: 305 PQLKLQEDNHSCRCWLHDSQQED 327 PQL+ H CRC+L++ + ++ Sbjct: 305 PQLQQVATGHQCRCFLYEERGDE 327 >ref|NP_693374.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC14409.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 341 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 196/318 (61%), Positives = 252/318 (79%) Query: 5 ILKVEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNPPG 64 IL+++ L THF T+ VPAVD V L I GEV+G+VGESG GKSVTSLSI+KL+PNPPG Sbjct: 5 ILELKNLSTHFTTKKEIVPAVDRVSLQIKKGEVVGIVGESGSGKSVTSLSIMKLIPNPPG 64 Query: 65 KIVSGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLHRS 124 KIV G I+ KG+D+ EK+M+ IRG+ +SMIFQEPMTSLNPLFT+G Q+ E +RLH Sbjct: 65 KIVEGEIMFKGEDLTQATEKKMKKIRGNEISMIFQEPMTSLNPLFTIGNQMCEAIRLHHK 124 Query: 125 LSKKDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADEPT 184 + KK+A ++DML+ VGI R E+I++EYPHQLSGGMRQRVMIAMS++C+PELLIADEPT Sbjct: 125 MKKKEAIDKSIDMLKLVGIARAESIVNEYPHQLSGGMRQRVMIAMSMACNPELLIADEPT 184 Query: 185 TALDVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVRDI 244 TALDVTIQAQILDL++ LN+EQGTA++LITHDLGVVA++C RV VMY+G+VVE+G+ R++ Sbjct: 185 TALDVTIQAQILDLMKNLNDEQGTAILLITHDLGVVADICDRVVVMYSGQVVEQGTKREV 244 Query: 245 FKNPLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVMEICRQSL 304 K+P HPYT+GLI+S+P + E ++LYSIPG+V + + GCRFAPRC E C + Sbjct: 245 LKDPRHPYTKGLIRSLPNLREKEQQLYSIPGTVAKPNLEQVGCRFAPRCEFAYERCFKEN 304 Query: 305 PQLKLQEDNHSCRCWLHD 322 P L + + RC+L D Sbjct: 305 PDLYDIGEGRTSRCFLQD 322 >ref|NP_624050.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM25654.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 327 Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust. Identities = 181/322 (56%), Positives = 245/322 (76%) Query: 5 ILKVEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNPPG 64 I++ L T+F+TE G V AV+ V I GE + VVGESGCGKSVT+LS+++L+ +PPG Sbjct: 5 IVEFRNLKTYFYTEEGVVKAVNDVSFSIREGETVCVVGESGCGKSVTALSLMRLIQSPPG 64 Query: 65 KIVSGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLHRS 124 KIV G I+ G+DI+ L + EMR IRG+ + MIFQEPMTSLNP+ T+G Q++E + LH+ Sbjct: 65 KIVGGEIIFDGRDILKLSDAEMRRIRGNEIGMIFQEPMTSLNPVLTIGDQLMEPLMLHKH 124 Query: 125 LSKKDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADEPT 184 ++KK+A A++++++VGIPR E I+ YPH+LSGGMRQR+MIAM++SC P+LLIADEPT Sbjct: 125 MTKKEAWNKAIELIKQVGIPRAEQIMTSYPHELSGGMRQRIMIAMAISCDPKLLIADEPT 184 Query: 185 TALDVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVRDI 244 TALDVTIQAQILDL+R+L EE+ A+MLITHDLG+VAEM V VMYAGKV+EE VR++ Sbjct: 185 TALDVTIQAQILDLLRRLKEEKKMALMLITHDLGIVAEMADYVVVMYAGKVIEEAPVREL 244 Query: 245 FKNPLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVMEICRQSL 304 FKNP HPYTRGL+++ P +G +ERLY+IPG VP C F+ RC + M++CR+ + Sbjct: 245 FKNPKHPYTRGLLKAKPVIGRRQERLYTIPGQVPNPIDLGDFCYFSDRCEYTMDVCRKKM 304 Query: 305 PQLKLQEDNHSCRCWLHDSQQE 326 P L E+ H CWL++ + + Sbjct: 305 PPLVADENGHKVACWLYEGEWK 326 >ref|NP_658524.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_846943.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP28429.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 338 Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust. Identities = 181/318 (56%), Positives = 240/318 (75%) Query: 3 QPILKVEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNP 62 + +L+V++L THFFT+ G AVDG++ I+ GE LG+VGESGCGKS+TSLSI++L+ Sbjct: 5 EEVLQVKDLKTHFFTDEGVSKAVDGLNFSISKGETLGIVGESGCGKSITSLSIMRLIDRE 64 Query: 63 PGKIVSGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLH 122 G V G IL KG+D++ E EMR IRG+ +SMIFQEPMTSLNP+++VG+QI E +R+H Sbjct: 65 SGSKVEGNILFKGKDLLQQNESEMRAIRGNQISMIFQEPMTSLNPVYSVGEQIAEAIRIH 124 Query: 123 RSLSKKDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADE 182 + LSKK+A AVDML+ VGIP PE + PH+LSGGMRQR+MIAM+++C+P+LLIADE Sbjct: 125 QKLSKKEAWNKAVDMLKLVGIPSPEKRAKQEPHELSGGMRQRIMIAMALACNPDLLIADE 184 Query: 183 PTTALDVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVR 242 PTTALDVTIQAQIL L++ L ++ G +++ITHDLGVV+E C RVAVMYAGK+VE + Sbjct: 185 PTTALDVTIQAQILSLMKSLQKQLGMGIIMITHDLGVVSETCDRVAVMYAGKIVEYADIE 244 Query: 243 DIFKNPLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVMEICRQ 302 IF +P HPYT GL+QS+P + +E L +IPGSVP GCRFA R +H E+C Sbjct: 245 HIFTSPKHPYTIGLLQSLPSLDTDQEELQTIPGSVPSPYHMPSGCRFADRYTHAKELCHN 304 Query: 303 SLPQLKLQEDNHSCRCWL 320 +LP+L+L +D RCW+ Sbjct: 305 TLPELQLTQDGSEVRCWM 322 >ref|NP_976579.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS39187.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 326 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 181/324 (55%), Positives = 248/324 (76%), Gaps = 1/324 (0%) Query: 3 QPILKVEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNP 62 + ++++++L THF TE G V AV+ V + GE + VVGESGCGKSVT+LSI+ L+ Sbjct: 3 KAVVELKDLQTHFQTEEGTVKAVNHVSFTVREGETVCVVGESGCGKSVTALSIMGLIAES 62 Query: 63 PGKIVSGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLH 122 G +V G IL +G+ ++ +KEKE+R++RG+ ++MIFQEPMTSLNP+FTVG+QI+ET+R H Sbjct: 63 -GSVVGGDILYEGKSLLGMKEKELRSLRGNDIAMIFQEPMTSLNPVFTVGEQIVETLREH 121 Query: 123 RSLSKKDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADE 182 LSK +A A++++RKVGI R + I+ YPH+LSGGM QR+MIA+++SC+P+LLIADE Sbjct: 122 ELLSKNEAYKKAIELIRKVGIARADEIVHSYPHELSGGMLQRIMIAVALSCNPKLLIADE 181 Query: 183 PTTALDVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVR 242 PTTALDVTIQAQILDL+R++ EE T+++LITHDLGVVAEM V VMY GKV+EE V Sbjct: 182 PTTALDVTIQAQILDLLRQVKEEFKTSILLITHDLGVVAEMADYVVVMYGGKVIEEAPVL 241 Query: 243 DIFKNPLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVMEICRQ 302 +IFKNP HPYT+GL++S P MG+ ++LYSIPG VP L + C F+ RC H MEIC++ Sbjct: 242 EIFKNPKHPYTKGLLKSKPVMGKRIDKLYSIPGQVPNLVGLDEFCYFSGRCEHCMEICKE 301 Query: 303 SLPQLKLQEDNHSCRCWLHDSQQE 326 P L + ++NH CWL++ + E Sbjct: 302 EAPSLNVHDENHKVACWLYEERAE 325 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 485,475,291 Number of extensions: 19863857 Number of successful extensions: 108092 Number of sequences better than 1.0e-05: 18436 Number of HSP's gapped: 89381 Number of HSP's successfully gapped: 19662 Length of query: 329 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 203 Effective length of database: 415,135,104 Effective search space: 84272426112 Effective search space used: 84272426112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)