BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0016.p (337 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693373.1| oligopeptide ABC transporter ATP-binding protei... 431 e-119 ref|NP_244512.1| oligopeptide ABC transporter (ATP-binding prote... 431 e-119 ref|ZP_00018215.1| hypothetical protein [Chloroflexus aurantiacus] 399 e-110 ref|NP_977327.1| oligopeptide ABC transporter, ATP-binding prote... 398 e-110 ref|NP_830697.1| Oligopeptide transport ATP-binding protein oppF... 398 e-109 >ref|NP_693373.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC14408.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 340 Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust. Identities = 200/325 (61%), Positives = 249/325 (76%) Query: 2 NDNLLEVRNLKKYYPVNKGFFNKTQAYIKAVDDISFSVRKGETFGLVGESGCGKSTTGRS 61 N LLEVR+LKKY+PV G ++ +KAVDD+SF V GE G+VGESGCGKSTTG++ Sbjct: 5 NQPLLEVRSLKKYFPVKGGVLGRSVGEVKAVDDVSFEVYPGEILGIVGESGCGKSTTGKA 64 Query: 62 LLRLIEPTAGEVWFEGRDITKLSXXXXXXXXXXXXIVFQDPFSSLDPRNTVQRILEEPMI 121 +LRLIEPT GEV F+G+DITKL+ I+FQDP++SL+PR+TV++I+ EP++ Sbjct: 65 ILRLIEPTEGEVIFQGKDITKLNAEQMRLLRKDMQIIFQDPYASLNPRHTVEKIINEPLM 124 Query: 122 VHGAGNAKERRAAVERLADVVGLAKAHLQRYPHQFSGGQRQRIGIARALALQPKLIIADE 181 +H ERR ++ L +VVGL+ H RYPHQFSGGQRQRIGIARALA PKLII DE Sbjct: 125 IHTDAKKAERRKRIKELLEVVGLSPYHASRYPHQFSGGQRQRIGIARALANNPKLIICDE 184 Query: 182 PVSALDVSIQSQVINLMQDLQKEFGLTYIFIAHDLSVVKHICDRVAVMYLGRIVEITGKN 241 PVSALDVS+QSQV+NLM+ L+ EF LTYIFIAHDLSVVKHI DRV VMYLG++VEI K+ Sbjct: 185 PVSALDVSVQSQVLNLMEKLRDEFQLTYIFIAHDLSVVKHISDRVGVMYLGKMVEIAPKD 244 Query: 242 KLYDQPQHPYTQALLSAVPEPDPDIRKERVILQGEVPSPANAPVGCAFNTRCPRVMDVCR 301 +LYD +HPYTQALLSAVP+PDPD+++ER+IL+G+VPSP + P GC F+TRCP MD+CR Sbjct: 245 QLYDNAKHPYTQALLSAVPDPDPDVQRERIILEGDVPSPQDPPSGCPFHTRCPMAMDICR 304 Query: 302 STRPPLLETGAGHLTACHLYDGEDR 326 P L H+ ACHLY E + Sbjct: 305 QELPQFLPVEDNHVVACHLYSDEQQ 329 >ref|NP_244512.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||E84105 oligopeptide ABC transporter (ATP-binding protein) BH3645 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07364.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 322 Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust. Identities = 198/322 (61%), Positives = 253/322 (78%) Query: 1 MNDNLLEVRNLKKYYPVNKGFFNKTQAYIKAVDDISFSVRKGETFGLVGESGCGKSTTGR 60 M LLEV+NL K + +N GFF++ ++AVD++SFSV +GE G+VGESGCGKSTTG+ Sbjct: 1 MGKPLLEVKNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGK 60 Query: 61 SLLRLIEPTAGEVWFEGRDITKLSXXXXXXXXXXXXIVFQDPFSSLDPRNTVQRILEEPM 120 ++LRLIEP++GEV+F G +IT LS I+FQDP++SL+PR+T+++I+ EP+ Sbjct: 61 AILRLIEPSSGEVYFAGTEITALSEGDMRKRRRDMQIIFQDPYASLNPRHTIEKIIREPL 120 Query: 121 IVHGAGNAKERRAAVERLADVVGLAKAHLQRYPHQFSGGQRQRIGIARALALQPKLIIAD 180 IVH G KE+ VE L + VGL+ H RYPHQFSGGQRQRIGIARALA+ PKL+I D Sbjct: 121 IVHQIGTKKEQLERVEELLETVGLSSDHATRYPHQFSGGQRQRIGIARALAVHPKLVICD 180 Query: 181 EPVSALDVSIQSQVINLMQDLQKEFGLTYIFIAHDLSVVKHICDRVAVMYLGRIVEITGK 240 EPVSALDVS+QSQ++NLM DL++ F LTYIFIAHDLSVVKHI DRVAVMYLGR+VE+ K Sbjct: 181 EPVSALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEMATK 240 Query: 241 NKLYDQPQHPYTQALLSAVPEPDPDIRKERVILQGEVPSPANAPVGCAFNTRCPRVMDVC 300 ++L++ P+HPYT+ALLSAVP PDPD KE+++L+G+VPSP+N P GCAF+TRCP MDVC Sbjct: 241 DQLFENPKHPYTRALLSAVPVPDPDAAKEKILLKGDVPSPSNPPEGCAFHTRCPDCMDVC 300 Query: 301 RSTRPPLLETGAGHLTACHLYD 322 + RP L E GH ACHLY+ Sbjct: 301 KIKRPSLHEKEKGHYVACHLYE 322 >ref|ZP_00018215.1| hypothetical protein [Chloroflexus aurantiacus] Length = 334 Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust. Identities = 181/319 (56%), Positives = 239/319 (74%) Query: 2 NDNLLEVRNLKKYYPVNKGFFNKTQAYIKAVDDISFSVRKGETFGLVGESGCGKSTTGRS 61 ND LLEVRNLKKY+P+ GF +T A ++AVDD+SF+V++GET GLVGESGCGK+TTGR+ Sbjct: 12 NDTLLEVRNLKKYFPIKGGFLRRTIAEVRAVDDVSFTVKRGETLGLVGESGCGKTTTGRT 71 Query: 62 LLRLIEPTAGEVWFEGRDITKLSXXXXXXXXXXXXIVFQDPFSSLDPRNTVQRILEEPMI 121 +LRL TAGEV FEG+D+ + S I+FQDP++SLDPR T+ + E ++ Sbjct: 72 VLRLERATAGEVIFEGQDVMRASGRTMKALRRDMQIIFQDPYASLDPRITIGESVAEGLV 131 Query: 122 VHGAGNAKERRAAVERLADVVGLAKAHLQRYPHQFSGGQRQRIGIARALALQPKLIIADE 181 +HG G ERR V + VGL+ +H+ R+PH+FSGGQRQRIGIARAL ++PKLI+ DE Sbjct: 132 IHGIGTPAERRERVREVLAKVGLSASHMSRFPHEFSGGQRQRIGIARALIMEPKLIVCDE 191 Query: 182 PVSALDVSIQSQVINLMQDLQKEFGLTYIFIAHDLSVVKHICDRVAVMYLGRIVEITGKN 241 PVSALDVSIQSQV+NL++ LQ+EFGLTY+FIAH+L+VV+HI DRV VMYLG++VE+T Sbjct: 192 PVSALDVSIQSQVLNLLRSLQREFGLTYLFIAHNLAVVEHISDRVGVMYLGKMVELTTSE 251 Query: 242 KLYDQPQHPYTQALLSAVPEPDPDIRKERVILQGEVPSPANAPVGCAFNTRCPRVMDVCR 301 +L+ +P HPYT+AL+SA+P P+P ++ER++LQG+VPSP N P GC F+ RC +C+ Sbjct: 252 ELFREPLHPYTKALISAIPNPNPFAKRERIVLQGDVPSPINPPSGCRFHPRCWIAKSICK 311 Query: 302 STRPPLLETGAGHLTACHL 320 P E GH ACH Sbjct: 312 EQEPVFEEKRKGHWVACHF 330 >ref|NP_977327.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS39935.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 323 Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust. Identities = 181/320 (56%), Positives = 239/320 (74%), Gaps = 1/320 (0%) Query: 3 DNLLEVRNLKKYYPVNKGFFNKTQAYIKAVDDISFSVRKGETFGLVGESGCGKSTTGRSL 62 +NL+EVRNLKKY+P+ KG F + +KAVDD+SF+++KGETFGLVGESGCGKSTTGRS+ Sbjct: 4 ENLIEVRNLKKYFPIKKGLFGRKTEQLKAVDDLSFTIKKGETFGLVGESGCGKSTTGRSI 63 Query: 63 LRLIEPTAGEVWFEGRDITKLSXXXXXXXXXXXXIVFQDPFSSLDPRNTVQRILEEPMIV 122 +RL + T+G V F+G+DI L I+FQDP++SL+P V +I+ EPM + Sbjct: 64 IRLHDVTSGNVLFDGKDIASLKESELKEYRKRMQIIFQDPYASLNPSMNVFQIISEPMNI 123 Query: 123 HGAGNAKERRAAVERLADVVGLAKAHLQRYPHQFSGGQRQRIGIARALALQPKLIIADEP 182 HG+ +E++ + L VGL + HL RYPH+FSGGQRQRI IARAL+++P I+ DEP Sbjct: 124 HGSYEKEEQKEIILDLLKKVGLKEEHLYRYPHEFSGGQRQRISIARALSVKPDFILCDEP 183 Query: 183 VSALDVSIQSQVINLMQDLQKEFGLTYIFIAHDLSVVKHICDRVAVMYLGRIVEITGKNK 242 +SALDVS+Q+QV+N++QD+Q+E G+TY+FIAHDLS+V+HI DR+ VMYLG IVEI Sbjct: 184 ISALDVSVQAQVVNMLQDIQEETGVTYLFIAHDLSMVRHISDRIGVMYLGNIVEIADSED 243 Query: 243 LYDQPQHPYTQALLSAVPEPDP-DIRKERVILQGEVPSPANAPVGCAFNTRCPRVMDVCR 301 LY +P HPYTQALLS++PEPDP +I KER+IL+GEVPSP N+P GC F TRC + C Sbjct: 244 LYTKPAHPYTQALLSSMPEPDPTNIGKERIILEGEVPSPLNSPSGCKFRTRCKFATEKCA 303 Query: 302 STRPPLLETGAGHLTACHLY 321 P ++E GH ACHL+ Sbjct: 304 QEVPKMVEIAKGHEVACHLF 323 >ref|NP_830697.1| Oligopeptide transport ATP-binding protein oppF [Bacillus cereus ATCC 14579] gb|AAP07898.1| Oligopeptide transport ATP-binding protein oppF [Bacillus cereus ATCC 14579] Length = 326 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 181/320 (56%), Positives = 239/320 (74%), Gaps = 1/320 (0%) Query: 3 DNLLEVRNLKKYYPVNKGFFNKTQAYIKAVDDISFSVRKGETFGLVGESGCGKSTTGRSL 62 +NL+EVRNLKKY+P+ KG F + +KAVDD+SF+++KGETFGLVGESGCGKSTTGRS+ Sbjct: 7 ENLIEVRNLKKYFPIKKGLFGRKTEQLKAVDDLSFTIKKGETFGLVGESGCGKSTTGRSI 66 Query: 63 LRLIEPTAGEVWFEGRDITKLSXXXXXXXXXXXXIVFQDPFSSLDPRNTVQRILEEPMIV 122 +RL + T+G V F+G+DI L I+FQDP++SL+P V +I+ EPM + Sbjct: 67 IRLHDVTSGNVLFDGKDIASLKESELKEYRKRMQIIFQDPYASLNPAMNVFQIISEPMNI 126 Query: 123 HGAGNAKERRAAVERLADVVGLAKAHLQRYPHQFSGGQRQRIGIARALALQPKLIIADEP 182 HG+ +E++ + L VGL + HL RYPH+FSGGQRQRI IARAL+++P I+ DEP Sbjct: 127 HGSYEKEEQKEIILDLLKKVGLKEEHLYRYPHEFSGGQRQRISIARALSVKPDFILCDEP 186 Query: 183 VSALDVSIQSQVINLMQDLQKEFGLTYIFIAHDLSVVKHICDRVAVMYLGRIVEITGKNK 242 +SALDVS+Q+QV+N++QD+Q+E G+TY+FIAHDLS+V+HI DR+ VMYLG IVEI Sbjct: 187 ISALDVSVQAQVVNMLQDIQEETGVTYLFIAHDLSMVRHISDRIGVMYLGNIVEIADSED 246 Query: 243 LYDQPQHPYTQALLSAVPEPDP-DIRKERVILQGEVPSPANAPVGCAFNTRCPRVMDVCR 301 LY +P HPYTQALLS++PEPDP +I KER+IL+GEVPSP N+P GC F TRC + C Sbjct: 247 LYTKPAHPYTQALLSSMPEPDPTNIGKERIILEGEVPSPLNSPSGCKFRTRCKFATEKCA 306 Query: 302 STRPPLLETGAGHLTACHLY 321 P ++E GH ACHL+ Sbjct: 307 QEVPKMVEIAKGHEVACHLF 326 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 487,299,697 Number of extensions: 19942510 Number of successful extensions: 129926 Number of sequences better than 1.0e-05: 17874 Number of HSP's gapped: 112402 Number of HSP's successfully gapped: 18933 Length of query: 337 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 211 Effective length of database: 415,135,104 Effective search space: 87593506944 Effective search space used: 87593506944 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)