BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0015.p (555 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693372.1| dipeptide ABC transporter dipeptide-binding pro... 489 e-137 pir||T44635 dipeptide transporter protein dppA [imported] - Baci... 486 e-136 ref|NP_244511.1| dipeptide ABC transporter (dipeptide-binding pr... 469 e-131 ref|NP_245173.1| DppA [Pasteurella multocida] >gi|12720463|gb|AA... 377 e-103 ref|NP_295014.1| extracellular solute-binding protein, family 5 ... 369 e-100 >ref|NP_693372.1| dipeptide ABC transporter dipeptide-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC14407.1| dipeptide ABC transporter dipeptide-binding protein [Oceanobacillus iheyensis HTE831] Length = 553 Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust. Identities = 250/531 (47%), Positives = 343/531 (64%), Gaps = 19/531 (3%) Query: 26 NNNAGTEAKGSNXXXXXXXXXXXXXXXQQDTLILGRGGDSASLDPAIVTDGESLKIGHQV 85 N++AGTE GS+ + L+ RGGDS SLDP TDGES ++ Q+ Sbjct: 33 NDDAGTEDNGSDASAS-----------EDQVLVFARGGDSESLDPGSTTDGESSRVTRQI 81 Query: 86 FDSLLEYKPGTSEVQASLADSWEVSADGLTYTFKLHPGVKFHDGTDFNAEAVVFNFTRWS 145 +SLL++ + E++ LA W++S DGLTYTF L GV FHDGTDFNAEAV NF RW+ Sbjct: 82 LESLLDFDKESFEIKPGLAHDWDISEDGLTYTFYLEEGVTFHDGTDFNAEAVKTNFERWA 141 Query: 146 DPASEFKF--EGDSFDYYDSMFGP-EG--SRVIKEVKAVDATTVQFTLNQPQAPFLQNIA 200 DP E+ F EG ++ Y +MFG EG VI E+ AV V+F L +P FLQN+A Sbjct: 142 DPNHEYAFTDEGFVYNIYGTMFGGFEGDEGHVIDEINAVSEHEVEFVLKEPLGFFLQNLA 201 Query: 201 MTSFGIASPAAIKEKKENFKNEPVGTGPYVFKEWKHNDSITLDKNPNYWKEGLPKLSKII 260 M+ F I SPAA++E + PVGTGP+ F W NDSI LDK +Y EGLPKL ++I Sbjct: 202 MSYFAITSPAALEEYGPDITENPVGTGPFKFNNWSKNDSIVLDKFEDYRVEGLPKLDQVI 261 Query: 261 VRSIPDNSARFNALQNGEIDLMEDLSPDDLSTLEGNTGLQKIERPPFNVSYLGFNLKQKP 320 + IPDNSAR ALQ+GEID+M+ L+PDD + LEG G++ + R N Y+GF+ +++P Sbjct: 262 FQVIPDNSARLIALQSGEIDMMDGLNPDDAAGLEGEEGIELLTRGENNFGYVGFHTQKEP 321 Query: 321 FDNVKVRQALNYAVNKQAIIDAFFSGQATAAVNPMPPSLWGYNDAVKDYEYXXXXXXXXX 380 D +VRQA+NYA+NKQAI DA ++G AT A NP+PPS GYND V+ YEY Sbjct: 322 VDQKEVRQAINYAINKQAIADALYAGYATTAKNPLPPSYLGYNDGVEGYEYNPDRARELL 381 Query: 381 XEAGYPEGLPDPVTLYAMPVSRPYMPDGKKVAEAIQADWEKIGVKTVIESPEWATYLDDT 440 EAG+ +GL + L P +RPYMPD + VA+ +Q + ++G++ I S EWA YL+ T Sbjct: 382 EEAGHADGL--EIELMISPTARPYMPDPETVAQIVQENLSEVGIELTITSHEWAPYLELT 439 Query: 441 KAGEKDDIYMLGWTGDNGDPDNFLYTLLDKDAIPGNNRSFYVNEKLHTLLINAQKETDQA 500 + GE +Y+LGW+G NGDPD FL +LL I +N +FY N ++ LL A++ DQ Sbjct: 440 EQGEH-QMYILGWSGTNGDPDYFLSSLLHSSNIGSSNNTFYENSEVDDLLNQAKRAVDQD 498 Query: 501 KRSDLYKQAQEIIKADAPWIPLVHTTPLLAAKANLKGYVPGPTGTEYYSEI 551 +R+DLY QAQE+I D+P + LVH+TP++A +N++ YVP P+ +E +E+ Sbjct: 499 ERADLYMQAQELISEDSPMVTLVHSTPVMAISSNVQNYVPHPSTSESLAEV 549 >pir||T44635 dipeptide transporter protein dppA [imported] - Bacillus firmus (fragment) gb|AAB41688.1| dipeptide transporter protein DppA [Bacillus firmus] Length = 551 Score = 486 bits (1251), Expect = e-136, Method: Compositional matrix adjust. Identities = 237/504 (47%), Positives = 329/504 (65%), Gaps = 8/504 (1%) Query: 56 TLILGRGGDSASLDPAIVTDGESLKIGHQVFDSLLEYKPGTSEVQASLADSWEVSADGLT 115 TL+ RGGDS SLD A VTDGES ++ ++++L+E+ + E+ LA WEV GL Sbjct: 50 TLVFARGGDSVSLDYASVTDGESSRVTKNIYETLIEFDRDSFEIGPGLAHDWEVDDSGLR 109 Query: 116 YTFKLHPGVKFHDGTDFNAEAVVFNFTRWSDPASEFKF--EGDSFDYYDSMFGP---EGS 170 + F L GVKFHDGTDFNAEAV NF RW+DP ++ F EG ++ Y + FG + Sbjct: 110 FVFHLEEGVKFHDGTDFNAEAVKVNFERWADPEHKYAFLDEGYTYSVYGTQFGGYKGDEG 169 Query: 171 RVIKEVKAVDATTVQFTLNQPQAPFLQNIAMTSFGIASPAAIKEKKENFKNEPVGTGPYV 230 VI+E+ + ++F LNQP FLQN+ M+ F I SP A +E PVGTGP+ Sbjct: 170 HVIEEINVLGDYEIEFVLNQPLGSFLQNMGMSYFAITSPQAFEEHGSAINENPVGTGPFK 229 Query: 231 FKEWKHNDSITLDKNPNYWKEGLPKLSKIIVRSIPDNSARFNALQNGEIDLMEDLSPDDL 290 F W +DSI L+KN +YWKEGLPKL ++I + IPDNSAR AL++G+ID+M+ L+PDD+ Sbjct: 230 FVSWSRDDSIILEKNEDYWKEGLPKLDRVIFQVIPDNSARLTALRSGQIDIMDGLNPDDV 289 Query: 291 STLEGNTGLQKIERPPFNVSYLGFNLKQKPFDNVKVRQALNYAVNKQAIIDAFFSGQATA 350 + +EG+ LQ ER N+ YLGF++ ++PF++ VR+A N+A++K+ +I + G A Sbjct: 290 AQIEGDDSLQVFERTTNNIGYLGFHVDKEPFNDPVVRRAFNHAIDKEGLIAILYGGLAET 349 Query: 351 AVNPMPPSLWGYNDAVKDYEYXXXXXXXXXXEAGYPEGLPDPVTLYAMPVSRPYMPDGKK 410 A N +PP GYNDA+ +Y Y EAG +G L+ MPV+RPYMPD ++ Sbjct: 350 AKNTIPPGYLGYNDAIDEYSYDPELAKELLAEAGIEDGF--TFDLWTMPVARPYMPDPQR 407 Query: 411 VAEAIQADWEKIGVKTVIESPEWATYLDDTKAGEKDDIYMLGWTGDNGDPDNFLYTLLDK 470 AEAIQA+ +G+ I + EWATYL++T+ G K D++MLGW+G NGDPD F LL Sbjct: 408 AAEAIQANLADVGITANIVTKEWATYLEETEQG-KHDVFMLGWSGVNGDPDYFFSNLLHG 466 Query: 471 DAIPGNNRSFYVNEKLHTLLINAQKETDQAKRSDLYKQAQEIIKADAPWIPLVHTTPLLA 530 DAIPG NRSFY NE+++ LL+ A+ E D R++LY+Q QE+I DAP +PLVH+ P LA Sbjct: 467 DAIPGGNRSFYSNEEVNELLVQAKTEVDFDVRAELYEQVQELIHEDAPMVPLVHSIPTLA 526 Query: 531 AKANLKGYVPGPTGTEYYSEIYFE 554 +N+K YVP P+ +E E+ E Sbjct: 527 GSSNVKNYVPHPSTSETLDEVELE 550 >ref|NP_244511.1| dipeptide ABC transporter (dipeptide-binding protein) [Bacillus halodurans] pir||D84105 dipeptide ABC transporter (dipeptide-binding protein) BH3644 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07363.1| dipeptide ABC transporter (dipeptide-binding protein) [Bacillus halodurans] Length = 557 Score = 469 bits (1208), Expect = e-131, Method: Compositional matrix adjust. Identities = 234/504 (46%), Positives = 332/504 (65%), Gaps = 8/504 (1%) Query: 53 QQDTLILGRGGDSASLDPAIVTDGESLKIGHQVFDSLLEYKPGTSEVQASLADSWEVSAD 112 + TLI RGGDS SLD A VTDGES ++ Q+F++L+E++ + E+ LA SW++S D Sbjct: 53 EDQTLIFARGGDSVSLDYASVTDGESSRVTKQIFETLIEFERDSFEIGPGLAHSWDMSED 112 Query: 113 GLTYTFKLHPGVKFHDGTDFNAEAVVFNFTRWSDPASEFKF--EGDSFDYYDSMFGP--- 167 GL YTF L GV FHDGT FNAEAV NF RW+DP + F EG ++ Y + FG Sbjct: 113 GLRYTFYLEEGVTFHDGTPFNAEAVKVNFERWADPDHPYAFVDEGYNYSVYGTQFGGFKG 172 Query: 168 EGSRVIKEVKAVDATTVQFTLNQPQAPFLQNIAMTSFGIASPAAIKEKKENFKNEPVGTG 227 + VI+E+ V+ ++F L++P FLQN+ M+ F ++SPAA +E PVGTG Sbjct: 173 DPGHVIEEINVVNEYEIEFVLSEPLGSFLQNMGMSYFAMSSPAAFEEYGAAINENPVGTG 232 Query: 228 PYVFKEWKHNDSITLDKNPNYWKEGLPKLSKIIVRSIPDNSARFNALQNGEIDLMEDLSP 287 P+ F W +DSI L+KN YWKEGLPKL KII + IPDNSAR AL++G+ID+M+ L+P Sbjct: 233 PFKFVSWTRDDSIVLEKNEEYWKEGLPKLDKIIFQVIPDNSARLTALRSGQIDIMDGLNP 292 Query: 288 DDLSTLEGNTGLQKIERPPFNVSYLGFNLKQKPFDNVKVRQALNYAVNKQAIIDAFFSGQ 347 DD++ +EG+ + ER N+ YLGF+++++PFD+ VRQA+N+A++K ++I A ++G Sbjct: 293 DDVAQVEGDDSIVLFERATNNIGYLGFHVEKEPFDDPLVRQAINHAIDKDSLITALYNGL 352 Query: 348 ATAAVNPMPPSLWGYNDAVKDYEYXXXXXXXXXXEAGYPEGLPDPVTLYAMPVSRPYMPD 407 A A NP+PP GYN+A+ Y Y EAGY +G L+ MPV+RPYMPD Sbjct: 353 AEPAKNPVPPGYLGYNEAIDPYAYDPERARELLAEAGYEDGF--EFELWTMPVARPYMPD 410 Query: 408 GKKVAEAIQADWEKIGVKTVIESPEWATYLDDTKAGEKDDIYMLGWTGDNGDPDNFLYTL 467 ++ AEAIQ+++ +G+ IE+ +WATYL++T+ G D++MLGW+G NGDPD FL L Sbjct: 411 PQRAAEAIQSNFADVGITAKIETRDWATYLEETEKGAH-DMFMLGWSGVNGDPDYFLSNL 469 Query: 468 LDKDAIPGNNRSFYVNEKLHTLLINAQKETDQAKRSDLYKQAQEIIKADAPWIPLVHTTP 527 L DAIPG NRSFY ++ +L A+K D +R LY +A E+I DA +PLVH+ P Sbjct: 470 LHGDAIPGGNRSFYDEGDVNEILNQAKKTVDPNEREVLYFEALEMIHEDAVMVPLVHSIP 529 Query: 528 LLAAKANLKGYVPGPTGTEYYSEI 551 +LA + + Y+P P+ +E E+ Sbjct: 530 VLAGSSRVVDYIPHPSTSETLDEV 553 >ref|NP_245173.1| DppA [Pasteurella multocida] gb|AAK02320.1| DppA [Pasteurella multocida] Length = 532 Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust. Identities = 205/514 (39%), Positives = 296/514 (57%), Gaps = 21/514 (4%) Query: 56 TLILGRGGDSASLDPAIVTDGESLKI-GHQVFDSLLEYKPGTSEVQASLADSWEVSADGL 114 T + + L P + TDG ++ G +F+ L ++ GT+ V +LA+ W+VS DG Sbjct: 26 TFVYCSEASPSYLSPVLGTDGATIDASGQAMFNGLTTFERGTTNVIPALAEKWDVSEDGK 85 Query: 115 TYTFKLHPGVKFHDG------TDFNAEAVVFNFTRWSDPASEF-KFEGDSFDYYDSMFGP 167 TY F L GVKFH DFNA+ VVF+F R DP + K G S++Y+ G Sbjct: 86 TYVFHLRKGVKFHSNKDFKPTRDFNADDVVFSFNRQLDPNHPYHKVSGGSYEYF---IGM 142 Query: 168 EGSRVIKEVKAVDATTVQFTLNQPQAPFLQNIAMTSFGI-----ASPAAIKEKKENFKNE 222 + +I +V+ VD TV+ +L P APFL N+AM I A A + E + Sbjct: 143 DMQNIIDKVEKVDDYTVKISLKVPNAPFLANLAMDFASIYSAQYADAMAKAKTPEKLDSA 202 Query: 223 PVGTGPYVFKEWKHNDSITLDKNPNYWKEGLPKLSKIIVRSIPDNSARFNALQNGEIDLM 282 P+GTGP+ F ++ + ++ NYW +G K+ +++ PD S R+ LQ GE Sbjct: 203 PIGTGPFEFVSYQKDSAVRYKAFENYW-QGKAKIDRLVFSITPDASVRYAKLQKGECHAA 261 Query: 283 EDLSPDDLSTLEGNTGLQKIERPPFNVSYLGFNLKQKPFDNVKVRQALNYAVNKQAIIDA 342 +P D++ L+ ++ + + +P NV YL FN+++ PFDNVKVRQALNYAVNK AII++ Sbjct: 262 PYPNPADIAKLKADSNITLLTKPGLNVGYLNFNVQKAPFDNVKVRQALNYAVNKDAIIES 321 Query: 343 FFSGQATAAVNPMPPSLWGYNDAVKDYEYXXXXXXXXXXEAGYPEGLPDPVTLYAMPVSR 402 + G A NP+PP++W YND VKDY Y EAG+ G L+AMPVSR Sbjct: 322 VYQGAGQVAKNPIPPTMWSYNDEVKDYAYDPEKAKALLKEAGFENGF--ETDLWAMPVSR 379 Query: 403 PYMPDGKKVAEAIQADWEKIGVKTVIESPEWATYLDDTKAGEKDDIYMLGWTGDNGDPDN 462 PY P+ +++AE +QADWEK+GVK I S EW YL +AG+ M+GWTGDNGDPDN Sbjct: 380 PYNPNARRMAELVQADWEKVGVKAKIVSYEWGEYLKRMRAGDH-QTGMMGWTGDNGDPDN 438 Query: 463 FLYTLLDKDAI-PGNNRSFYVNEKLHTLLINAQKETDQAKRSDLYKQAQEIIKADAPWIP 521 FL TLL A+ G+N + + +++ + L+ A + TD A+R+ LY+QAQ + K APWI Sbjct: 439 FLNTLLSCAAVESGSNYANFCHKEFNDLVTKAAQVTDPAERTALYQQAQLVFKEQAPWIT 498 Query: 522 LVHTTPLLAAKANLKGYVPGPTGTEYYSEIYFEQ 555 + H+T + +KGYV P G + + E+ Sbjct: 499 IAHSTTYFPVRKEVKGYVIDPFGLHNFYAVELEK 532 >ref|NP_295014.1| extracellular solute-binding protein, family 5 [Deinococcus radiodurans] pir||H75413 extracellular solute-binding protein, family 5 - Deinococcus radiodurans (strain R1) gb|AAF10860.1| extracellular solute-binding protein, family 5 [Deinococcus radiodurans] Length = 527 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 200/509 (39%), Positives = 299/509 (58%), Gaps = 16/509 (3%) Query: 53 QQDTLILGRGGDSASLDPAIVTDGESLKIGHQVFDSLLEYKPGTSEVQASLADSWEVSAD 112 Q TL+ G G+ SL+PA +TDG S+ + Q++D+L+++K GT+++ LA SW+ +A+ Sbjct: 19 QSGTLVFGGNGEPVSLEPANITDGISINVQRQIYDTLIDFKDGTTQLVPGLATSWKPNAN 78 Query: 113 GLTYTFKLHPGVKFHDGTDFNAEAVVFNFTRWSDPASEFKF--EGDSFDYYDSMFG---P 167 ++TF L GVKFHDGT FNA+AVVFN TRW D + +G +F+ + G Sbjct: 79 ATSWTFTLRKGVKFHDGTPFNADAVVFNLTRWWDKNHPYSLRKDGRTFEIVGDLLGGYKG 138 Query: 168 EGSRVIKEVKAVDATTVQFTLNQPQAPFLQNIAMTSFGIASPAAIKEKKENF---KNEPV 224 + + VIK V V+ +TV+ L +P + F IA FGIASP AIKE+ + + V Sbjct: 139 DATSVIKNVVKVNDSTVRVDLTKPSSVFPDVIASGYFGIASPTAIKEQGAKYGTPAGKAV 198 Query: 225 GTGPYVFKEWKHNDSITLDKNPNYWKEGLPKLSKIIVRSIPDNSARFNALQNGEIDLMED 284 GTGP++F+ WK D +TL N NYW K++ +I+R+I D S R N L+ G ID D Sbjct: 199 GTGPFIFQSWKSGDRVTLTANKNYWGTKA-KVATVIIRAIKDPSQRLNELRAGTIDFAND 257 Query: 285 LSPDDLSTLEGNTGLQKIERPPFNVSYLGFNLKQKPFDNVKVRQALNYAVNKQAIIDAFF 344 + PD L ++ + L ++RP FNV ++ N + K N KVRQA++ A+NK+AI+DAF+ Sbjct: 258 MVPDSLKAIQADKNLVAVKRPSFNVGFVSLNNRNKYLKNAKVRQAISMALNKKAIVDAFW 317 Query: 345 SGQATAAVNPMPPSLWGYNDAV--KDYEYXXXXXXXXXXEAGYPEGLPDPVTLYAMPVSR 402 G + + +PP L YN + DY++ +AGYP G + L+ MPVSR Sbjct: 318 PGLGQSNASFVPPDLARYNSSKVPADYKFDPAAAKKLLADAGYPNGF--SMDLWYMPVSR 375 Query: 403 PYMPDGKKVAEAIQADWEKIGVKTVIESPEWATYLDDTKAGEKDDIYMLGWTGDNGDPDN 462 PY P K +AEA+ AD IG+K +++ +WA YL+D D+YM+GWTGD G PDN Sbjct: 376 PYFPSPKPIAEAMAADLSAIGIKVNLKTEDWAKYLEDRNKAPGFDMYMIGWTGDYGHPDN 435 Query: 463 FLYTLLDKDAIPGNNRSFYVNEKLHTLLINAQKETDQAKRSDLYKQAQEIIKADAPWIPL 522 F + G++ Y + ++ LL + +A+R +Y Q E+ A IP+ Sbjct: 436 FYSAYYGPN---GSSDIGYNSVQIQNLLEKGRAAKTEAERKSIYGQIHELTYNAAYRIPI 492 Query: 523 VHTTPLLAAKANLKGYVPGPTGTEYYSEI 551 VH+ PL AA+ +KG+VP P G+E ++ I Sbjct: 493 VHSQPLAAARTYVKGWVPSPLGSESFNNI 521 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 869,036,218 Number of extensions: 37972140 Number of successful extensions: 73453 Number of sequences better than 1.0e-05: 1548 Number of HSP's gapped: 69746 Number of HSP's successfully gapped: 1569 Length of query: 555 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 424 Effective length of database: 401,559,609 Effective search space: 170261274216 Effective search space used: 170261274216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)