BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0011.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244194.1| molybdenum transport system (permease) [Bacillu... 167 2e-40 ref|NP_391219.1| alternate gene name: yvsC~similar to molybdenum... 150 3e-35 ref|NP_830088.1| Molybdenum transport system permease protein mo... 142 7e-33 ref|NP_842764.1| molybdenum ABC transporter, permease protein [B... 142 7e-33 ref|NP_976549.1| molybdenum ABC transporter, permease protein, p... 141 8e-33 >ref|NP_244194.1| molybdenum transport system (permease) [Bacillus halodurans] pir||H84065 molybdenum transport system (permease) BH3328 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07047.1| molybdenum transport system (permease) [Bacillus halodurans] Length = 176 Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/148 (54%), Positives = 107/148 (72%) Query: 70 ILGRRSWIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDAARA 129 I GR+S IG+ E + I+FTW FPL+Y++ K+GFE +++++EDA+R Sbjct: 23 IFGRQSPIGQGIEWVFQQPIMFTWWAAVIAATVVAFPLMYQSAKSGFETIDREIEDASRV 82 Query: 130 QGASELQVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAIYVA 189 GA+E QV VT+PLA R++ AG +L FAR LGEFGAT+M AGNIPGRTQT+PTAIY+A Sbjct: 83 DGANERQVFLLVTVPLASRAIVAGAILSFARALGEFGATLMFAGNIPGRTQTIPTAIYIA 142 Query: 190 VDGGNMTLAWLWVCSIIAISALMLMFVN 217 +D GNM LAWLWV +I+ IS ML+ +N Sbjct: 143 MDAGNMELAWLWVLTILVISFTMLLVLN 170 >ref|NP_391219.1| alternate gene name: yvsC~similar to molybdenum transport permease [Bacillus subtilis] pir||B70040 molybdenum transport permease homolog yvgM - Bacillus subtilis emb|CAB15344.1| yvgM [Bacillus subtilis subsp. subtilis str. 168] emb|CAA11713.1| putative molybdate transport protein, YvgM [Bacillus subtilis] Length = 186 Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 72/151 (47%), Positives = 98/151 (64%) Query: 70 ILGRRSWIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDAARA 129 I G+ S+IG+ E + ++FTW FPL+Y++ K GF ++ D++ AA Sbjct: 34 IFGKHSFIGQAIEWIFQQPVIFTWWAAVIASAVVAFPLMYQSAKTGFADIDPDIQGAAMV 93 Query: 130 QGASELQVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAIYVA 189 GAS +V ++++PLA SL G +L AR LGEFGAT+M AGNIPG TQT+PTAIYVA Sbjct: 94 DGASRWKVFIHISVPLAYPSLLTGSILSLARALGEFGATLMFAGNIPGVTQTLPTAIYVA 153 Query: 190 VDGGNMTLAWLWVCSIIAISALMLMFVNRRS 220 +D GN TLAW WV I+ IS LML F+ ++ Sbjct: 154 LDSGNNTLAWAWVVCIVVISFLMLFFIQQKK 184 >ref|NP_830088.1| Molybdenum transport system permease protein modB [Bacillus cereus ATCC 14579] gb|AAP07289.1| Molybdenum transport system permease protein modB [Bacillus cereus ATCC 14579] Length = 224 Score = 142 bits (357), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 72/153 (47%), Positives = 95/153 (62%), Gaps = 3/153 (1%) Query: 70 ILGRRSWIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDAARA 129 I G S IGK E + +I+FT FPL+Y++ K GF +E++AR Sbjct: 68 IFGNNSPIGKWVESLFQQSIMFTSTAAIIASTVVAFPLMYQSAKTGFSIANVQIEESARD 127 Query: 130 QGASELQVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAIYVA 189 GASE QV +VTLPLA +L +G +L F R LGEFGAT+M AGNIPG+TQT+PTAIY+A Sbjct: 128 LGASEYQVFLHVTLPLAFPALLSGMILSFVRALGEFGATLMFAGNIPGKTQTIPTAIYMA 187 Query: 190 VDGGNMTLAWLWVCSIIAISALMLM---FVNRR 219 +D NM LAW V I +S + L+ +N+R Sbjct: 188 IDASNMQLAWTLVVITIGMSLVFLLCIQLINKR 220 >ref|NP_842764.1| molybdenum ABC transporter, permease protein [Bacillus anthracis str. Ames] gb|AAP24250.1| molybdenum ABC transporter, permease protein [Bacillus anthracis str. Ames] Length = 176 Score = 142 bits (357), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 72/153 (47%), Positives = 95/153 (62%), Gaps = 3/153 (1%) Query: 70 ILGRRSWIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDAARA 129 I G S IG E + +I+FT FPL+Y++ K GF +E++AR Sbjct: 15 IFGNNSPIGMWIESIFQQSIMFTSTAAIIASTVVAFPLMYQSAKTGFSIANVQIEESARD 74 Query: 130 QGASELQVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAIYVA 189 GASE QV +VTLPLA +L +G +L F R LGEFGAT+M AGNIPG+TQT+PTAIY+A Sbjct: 75 LGASEYQVFLHVTLPLAFPALLSGMILSFVRALGEFGATLMFAGNIPGKTQTIPTAIYMA 134 Query: 190 VDGGNMTLAWLWVCSIIAISALMLM---FVNRR 219 +D NM LAW V I++S L L+ +N+R Sbjct: 135 IDASNMQLAWTLVVITISMSLLFLLCIQLINKR 167 >ref|NP_976549.1| molybdenum ABC transporter, permease protein, putative [Bacillus cereus ATCC 10987] gb|AAS39157.1| molybdenum ABC transporter, permease protein, putative [Bacillus cereus ATCC 10987] Length = 224 Score = 141 bits (356), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 72/153 (47%), Positives = 95/153 (62%), Gaps = 3/153 (1%) Query: 70 ILGRRSWIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDAARA 129 I G S IG E + +I+FT FPL+Y++ K GF +E++AR Sbjct: 68 IFGNNSPIGMWIESIFQQSIMFTSTAAIIASTVVAFPLMYQSAKTGFSIANVQIEESARD 127 Query: 130 QGASELQVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAIYVA 189 GASE QV +VTLPLA +L +G +L F R LGEFGAT+M AGNIPG+TQT+PTAIY+A Sbjct: 128 LGASEYQVFLHVTLPLAFPALLSGMILSFVRALGEFGATLMFAGNIPGKTQTIPTAIYMA 187 Query: 190 VDGGNMTLAWLWVCSIIAISALMLM---FVNRR 219 +D NM LAW V I++S L L+ +N+R Sbjct: 188 IDASNMQLAWTLVVITISMSLLFLLCIQLINKR 220 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.139 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 243,045,965 Number of extensions: 7575486 Number of successful extensions: 29057 Number of sequences better than 1.0e-05: 400 Number of HSP's gapped: 29165 Number of HSP's successfully gapped: 400 Length of query: 220 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 99 Effective length of database: 428,710,599 Effective search space: 42442349301 Effective search space used: 42442349301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 123 (52.0 bits)