BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0151.0010.p (187 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00073543.1| hypothetical protein [Trichodesmium erythraeu... 77 2e-13 gb|AAO38392.1| NifX-associated protein [Leptospirillum ferrooxid... 71 1e-11 gb|AAA93026.1| Orf2 69 4e-11 ref|NP_485478.1| hypothetical protein [Nostoc sp. PCC 7120] >gi|... 69 6e-11 ref|ZP_00054380.1| hypothetical protein [Magnetospirillum magnet... 69 6e-11 >ref|ZP_00073543.1| hypothetical protein [Trichodesmium erythraeum IMS101] gb|AAF82642.1| ORF2 [Trichodesmium sp. IMS101] Length = 156 Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 1/137 (0%) Query: 40 FVRRLCNLLDTADFFGRHASLSPQEKIAKLFLASAEDKNKSDFNCAVSPKVRQQVPILFQ 99 F++ L + D +G + S SP E I K ++ S ++K + + V+P ++ + + Sbjct: 18 FIKELIRSIQAQDSYGVYKSWSP-ELILKPYIVSKQEKRQISTDEEVNPMTLARIKLFYN 76 Query: 100 AIAGVMEEKSGAMVQSTAEINVEGFGRGLLYTGRVILVLKSLRAGAPFPFTSEEKTIRYG 159 AIA +E ++ ++Q IN EGFG L++ GR+++V ++LR F FTS EK G Sbjct: 77 AIATSIELETNEIMQVVVNINHEGFGWALVFCGRLLVVARTLRDAQRFGFTSLEKMEDEG 136 Query: 160 VECVEEGLAFLEKYKEM 176 + + G+ +KYKE+ Sbjct: 137 EKMAKAGIELAKKYKEV 153 >gb|AAO38392.1| NifX-associated protein [Leptospirillum ferrooxidans] Length = 167 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 1/145 (0%) Query: 31 ELDQGTADAFVRRLCNLLDTADFFGRHASLSPQEKIAKLFLASAEDKNKSDFNCAVSPKV 90 E Q +D F + L + D FG L+ E++ K F+ AE + P + Sbjct: 19 ESTQTASDQFFKDLALQFRSHDGFGAWDKLT-DEQVLKPFILDAEARRAIPIIGDPDPDI 77 Query: 91 RQQVPILFQAIAGVMEEKSGAMVQSTAEINVEGFGRGLLYTGRVILVLKSLRAGAPFPFT 150 ++ I + +A +E+++G MV +++ EGFGR +L GR+++V K+LR F F Sbjct: 78 LWRLEIFYNTVALSIEKRTGVMVTPMMKMSHEGFGRMVLIGGRLVVVNKNLRDVHRFGFA 137 Query: 151 SEEKTIRYGVECVEEGLAFLEKYKE 175 S EK + + + +G+ +EK+KE Sbjct: 138 SREKLLEEAEKLISQGVEMIEKFKE 162 >gb|AAA93026.1| Orf2 Length = 158 Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 1/138 (0%) Query: 40 FVRRLCNLLDTADFFGRHASLSPQEKIAKLFLASAEDKNKSDFNCAVSPKVRQQVPILFQ 99 FV L + D +G + + S E I K ++ S + K + V + ++ ++ Sbjct: 20 FVEELVRQIRAQDSYGFYRNWSD-ELILKPYIVSKQAKRQISVEGDVESATKARIMSFYR 78 Query: 100 AIAGVMEEKSGAMVQSTAEINVEGFGRGLLYTGRVILVLKSLRAGAPFPFTSEEKTIRYG 159 AIA +E+K+G++ Q +++ EGFG L+++GR++LV ++LR F F S EK G Sbjct: 79 AIASQIEQKTGSLSQVVLDLSHEGFGWVLVFSGRLLLVARTLRDAQRFGFDSIEKLAAEG 138 Query: 160 VECVEEGLAFLEKYKEMT 177 + +G+ EKY E+T Sbjct: 139 EKLTLKGIELAEKYTEVT 156 >ref|NP_485478.1| hypothetical protein [Nostoc sp. PCC 7120] pir||AH1985 hypothetical protein all1435 [imported] - Nostoc sp. (strain PCC 7120) gb|AAA87950.1| unknown dbj|BAB73392.1| ORF_ID:all1435~hypothetical protein [Nostoc sp. PCC 7120] Length = 158 Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 7/150 (4%) Query: 34 QGTADA------FVRRLCNLLDTADFFGRHASLSPQEKIAKLFLASAEDKNKSDFNCAVS 87 GTA++ F++ L + D +G + S + + + K F+ + + K + V Sbjct: 8 NGTAESVVSTSPFLKALVLQIRGQDAYGVYRSWA-DDLLLKGFVVTKQKKREISVQGEVD 66 Query: 88 PKVRQQVPILFQAIAGVMEEKSGAMVQSTAEINVEGFGRGLLYTGRVILVLKSLRAGAPF 147 P ++ F+AIA +E+++G + Q +++ EGFG L+++GR+IL +K+LR F Sbjct: 67 PVTISRIMSFFKAIAARIEQETGLISQVVLDLSHEGFGWALVFSGRLILTVKTLRDAHRF 126 Query: 148 PFTSEEKTIRYGVECVEEGLAFLEKYKEMT 177 F S EK G VE G+ +YKE++ Sbjct: 127 GFDSLEKLAEEGDRYVERGVDLANRYKEVS 156 >ref|ZP_00054380.1| hypothetical protein [Magnetospirillum magnetotacticum] Length = 148 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 1/145 (0%) Query: 35 GTADAFVRRLCNLLDTADFFGRHASLSPQEKIAKLFLASAEDKNKSDFNCAVSPKVRQQV 94 T DAF++ LC + D G S+S +E +A L + + F P + +V Sbjct: 5 ATQDAFIKSLCMFIRAQDQSGAWESMSDEEVLAPYILTKEQRREIPLFGDP-DPDILWRV 63 Query: 95 PILFQAIAGVMEEKSGAMVQSTAEINVEGFGRGLLYTGRVILVLKSLRAGAPFPFTSEEK 154 F AIA +E K+G + +I+ EG+GR +L G+++ V +R F F S E Sbjct: 64 EQYFNAIAMAIENKTGRAIAPIMKIHHEGWGRMILTAGKLVAVNSYMRELHRFGFDSVEA 123 Query: 155 TIRYGVECVEEGLAFLEKYKEMTAC 179 + ++EG+A +EKY ++ A Sbjct: 124 MSAKAQKIIDEGIATIEKYPDVAAA 148 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 256,972,909 Number of extensions: 9650445 Number of successful extensions: 19844 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 19845 Number of HSP's successfully gapped: 23 Length of query: 187 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 69 Effective length of database: 436,855,896 Effective search space: 30143056824 Effective search space used: 30143056824 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)