BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0035.p (899 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_569203.1| pli0050 [Listeria innocua] >gi|16415833|emb|CAC... 951 0.0 ref|NP_466201.1| similar to the two components sensor protein kd... 642 0.0 ref|NP_472155.1| similar to the two components sensor protein kd... 639 0.0 ref|NP_350259.1| Sensor protein KdpD (ATPase containing sensor d... 594 e-168 gb|AAB39095.1| KdpD [Clostridium acetobutylicum] 574 e-162 >ref|NP_569203.1| pli0050 [Listeria innocua] emb|CAC42048.1| pli0050 [Listeria innocua] Length = 888 Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/879 (53%), Positives = 636/879 (72%), Gaps = 3/879 (0%) Query: 21 GQRRGRLKIFIGYAPGAGKTCAMLKAAHEEQKEGTDVVGGFIETHARPDTLAMLEGLELV 80 +RRG+L+I+ GYA G GKT AML A E K G D+V G++E HARP+T+ +L GLE + Sbjct: 13 NKRRGKLRIYFGYAAGVGKTFAMLNDAQELVKTGVDLVVGYVEPHARPETMKLLNGLEKI 72 Query: 81 PPIKMSYEASVIPEFDLDRALQRSPELILLDDLAHANTAGCRHKKRYQDVEELLRAGIHV 140 P + Y+ + EFDLD AL+R+P+LI++D+LAH N CRHKKRYQD+EELL+AGI V Sbjct: 73 PTKPILYKGVKLYEFDLDSALKRNPKLIIVDELAHTNAYACRHKKRYQDIEELLQAGIDV 132 Query: 141 YTTINVQQIESLTDIVYSITGMTVQERIPDSVFDSADQVELVDIEPNDLIDRLHKGKIYR 200 +TT+NVQ IESL DIV SIT + V ERIPD+VFD AD++ELVDIEP DL+DRL+KGKIYR Sbjct: 133 FTTVNVQHIESLNDIVESITNIHVLERIPDAVFDGADEIELVDIEPQDLLDRLNKGKIYR 192 Query: 201 DNADEQAMGQLFTKEKLTALREIALRNTASQLNRIAIQISEQAKKNDYDTKDHILVCLSS 260 + QA+ FT +KL ALREIALR TA Q+ RIA + + KN+Y K+HILVC+S Sbjct: 193 EKQARQAVLNFFTTDKLIALREIALRRTADQVKRIA-ESNIVNPKNNY-GKEHILVCISP 250 Query: 261 AASNKKVIRAAARMAEAFHGQFTALFVETPQTQKLTQKNKTELRDNLRLAEQMGANIATV 320 + N+KVIR AARMAEA G+ TA+FVETP+ ++ + K + LR NLRLAEQ+GA I++V Sbjct: 251 SQGNEKVIRTAARMAEALKGKLTAVFVETPEYEESSIKEQESLRKNLRLAEQLGAQISSV 310 Query: 321 YGEDVPGQIAEYAKTSRVSKIVLGRSPFKKRGYAKSNLVDKLTTLLPNIEIYIIPYTQPS 380 YGED+ Q+AEYA S+ +KI+LGRS K++ + K LVDKL+ + + +IYIIP TQPS Sbjct: 311 YGEDISQQLAEYANVSQATKIILGRSS-KRKSWLKPKLVDKLSEQIDSTDIYIIPDTQPS 369 Query: 381 FYKRLPLYARYPKLSLADTNKTIAILVVCTLIGIWFRYLGFLESNIITVYILGVLLSAIV 440 K+ S++D+ +T+ IL+ CT+IGI F Y F NII VYILGV ++A++ Sbjct: 370 KTKKHFKIKNEMSFSVSDSIRTVIILLFCTIIGIIFDYNHFSVVNIIIVYILGVQVNAVI 429 Query: 441 TKGRVYSAVSSVMSVLVFNYFFTEPYYSLNAYEAGYPVTFLVMLAASFITSTLTMRVSEQ 500 TKGRVYS VS+++SVL+FNYFFTEP Y+L+A + GYPVTF++MLAA+ ITSTLT R+ EQ Sbjct: 430 TKGRVYSIVSALLSVLIFNYFFTEPRYTLHAIDPGYPVTFVIMLAAAIITSTLTKRIKEQ 489 Query: 501 ARQSAQKAYRTEVLLETSRKLQQAKDSPAIIDEMARQMVKLLDRTVIFYSVQEGALSAPL 560 ARQ++Q+AYRTE+LLETS+KLQ+A A++ E+A Q+ KLL++ +I Y V+ L PL Sbjct: 490 ARQASQRAYRTEILLETSQKLQKASTESALLREIAIQINKLLEKPIIIYPVRVNKLDKPL 549 Query: 561 IFPKEGSEVDPHTYTGSNERAVADWVLKNNKRAGATTDTFFGANCLYHAVRGGDTVFAVA 620 IF ++ + + + ER VA+WVLKN KRAG T++TF CLY AVRG V AV Sbjct: 550 IFNEDKRDNNESEWISKEERTVAEWVLKNQKRAGVTSNTFTNTKCLYLAVRGNGEVLAVI 609 Query: 621 AIVMEQEEPLEVFEKGLMIAMXXXXXXXXXXXXXXXXXXXISMQIQQEHLRANLLRSISH 680 IVM++E P++ FEK ++IA+ IS+++QQE +R NLLR+ISH Sbjct: 610 GIVMDKEAPMDNFEKSILIAVLAESALALEKEKFRVQEQIISLRMQQEQVRTNLLRAISH 669 Query: 681 DLRTPLTSISGNAGILVGNSGVLSEEQKKGLYTDIYDDSIWLIHLVENLLSISRIENGTL 740 DLRTPLTSISGNAG+L NS +L E+QK+ LY DIYDDSIWLI+LVENLLSI+R++ G+ Sbjct: 670 DLRTPLTSISGNAGVLKANSHILEEKQKQNLYNDIYDDSIWLINLVENLLSITRLDEGSS 729 Query: 741 NLNFQAELMEEVISEALLHVNRNSEKHVIHTKLDDELLMARMDSRLIVQVLINIVDNAIK 800 N+N Q +L++EVISEAL H++R S ++ I ++ DE L+ +DS+LI+QV+INIVDNAIK Sbjct: 730 NINMQPDLIDEVISEALRHIDRKSIEYNISMEIQDEDLIVNIDSQLIMQVIINIVDNAIK 789 Query: 801 YTQQGSHITVSARQDGHRVIVEISDDGPGISEEAKARLFEMFFTADNIXXXXXXXXXXXX 860 YT GS I + A+QD V VEI D+G GI ++ K ++F+MF+TA+NI Sbjct: 790 YTPPGSKICIVAKQDMDSVCVEIKDNGEGIPDKEKDKIFDMFYTANNINADGRRGLGLGL 849 Query: 861 SLCKSIVNAHGGTIGVRDNVPKGTVFYFTLHAEEVNVHE 899 LC SI+ AH G + V+DN+PKG +F L EEV+++E Sbjct: 850 YLCMSIIQAHQGEMYVKDNIPKGAIFGLVLPIEEVDLNE 888 >ref|NP_466201.1| similar to the two components sensor protein kdpD [Listeria monocytogenes EGD-e] pir||AF1409 the two components sensor protein kdpD homolog lmo2679 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00892.1| lmo2679 [Listeria monocytogenes] Length = 896 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/894 (40%), Positives = 519/894 (58%), Gaps = 10/894 (1%) Query: 1 MEINQTGDGSILEQLTGMKTGQRRGRLKIFIGYAPGAGKTCAMLKAAHEEQKEGTDVVGG 60 ME N+ ++L L +T G+LKI+ G+A G GKT AML A ++ G DVV G Sbjct: 1 METNRPSPDALLVNLQ-EETDSSVGKLKIYFGFAAGVGKTYAMLSDAKDQLAAGVDVVAG 59 Query: 61 FIETHARPDTLAMLEGLELVPPIKMSYEASVIPEFDLDRALQRSPELILLDDLAHANTAG 120 +IE HAR +TL MLEG+ ++ P ++++ + EFDLD AL+R PELIL+D+LAH N AG Sbjct: 60 YIEPHARVETLRMLEGIPIISPKAINHKNIALKEFDLDEALKRKPELILVDELAHTNAAG 119 Query: 121 CRHKKRYQDVEELLRAGIHVYTTINVQQIESLTDIVYSITGMTVQERIPDSVFDSADQVE 180 R+KKR+QDVEELL+AGI VYTT+NVQ IESL DIV IT + V+E IPD VFD AD+V+ Sbjct: 120 VRNKKRFQDVEELLQAGIDVYTTVNVQHIESLNDIVEGITKVAVRETIPDYVFDEADRVK 179 Query: 181 LVDIEPNDLIDRLHKGKIYRDNADEQAMGQLFTKEKLTALREIALRNTASQLNRIAIQIS 240 L+DIEP++L+ RL +GKIY+ + AM FT+E L LREIA+R A +RI+ + Sbjct: 180 LIDIEPDELLKRLEQGKIYQPERAQTAMQNFFTRENLKLLREIAMRKAA---DRISHEYD 236 Query: 241 EQAKKNDYDTKDHILVCLSSAASNKKVIRAAARMAEAFHGQFTALFVETPQTQKLTQKNK 300 + + LVC+ ++ S+ K+IR AR AEAF +TAL++E + +T+ K Sbjct: 237 QTGVYPEKRASSKWLVCIGTSPSSAKLIRWTARTAEAFRAPWTALYIENEENDYMTKAEK 296 Query: 301 TELRDNLRLAEQMGANIATVYGEDVPGQIAEYAKTSRVSKIVLGRSPFKK--RGYAKSNL 358 LR+ + LAE++GA I T+ G D+ +AEYA+ + V+ IV+G+S + R + + Sbjct: 297 KCLRETMELAERLGAEIVTLAGHDIAETVAEYARLTGVTNIVVGKSRRRMGLRSLFEEDF 356 Query: 359 VDKLTTLLPNIEIYIIPYTQPSFYKRLPLYARYPK-LSLADTNKTIAILVVCTLIGIWFR 417 D+L T L N++++IIP + P KR + R+ L+ D K + +L + T I + Sbjct: 357 EDRLITHLDNVDMHIIPSSHPKAKKR-RMKMRFKSFLTWHDMAKMVLLLALATAICVGLS 415 Query: 418 YLGFLESNIITVYILGVLLSAIVTKGRVYSAVSSVMSVLVFNYFFTEPYYSLNAYEAGYP 477 G + N+I VYIL VL+ + VT G VY + S++ V++FN+FFT P Y+ N +AGYP Sbjct: 416 EFGIGDQNVIMVYILSVLIISRVTSGYVYGVLGSIIGVMLFNFFFTSPLYTFNTIQAGYP 475 Query: 478 VTFLVMLAASFITSTLTMRVSEQARQSAQKAYRTEVLLETSRKLQQAKDSPAIIDEMARQ 537 VTF +ML + ITS LT+R+ QA + ++ RTEVL E +++L ++ II+ Sbjct: 476 VTFGIMLLVALITSALTVRIKTQASLAVERERRTEVLYEINKQLLVTRNLKGIINLTNEY 535 Query: 538 MVKLLDRTVIFYSVQEGALSAPLIFPKEGSEVDPHTYTGSNERAVADWVLKNNKRAGATT 597 ++ L R+VIFYS + + EG E D ++E AVA WV KN KRAGA T Sbjct: 536 ILHLFSRSVIFYSADPAKSNEGIFVQAEGKE-DASALLSADEEAVAHWVFKNKKRAGAGT 594 Query: 598 DTFFGANCLYHAVRGGDTVFAVAAIVMEQEE-PLEVFEKGLMIAMXXXXXXXXXXXXXXX 656 DT GA Y V V V + EE PL + + + Sbjct: 595 DTLMGAFGYYMPVMSQGKVLGVIGVSCSPEEGPLTQDNRIFLRMISSQVALALERQYLSE 654 Query: 657 XXXXISMQIQQEHLRANLLRSISHDLRTPLTSISGNAGILVGNSGVLSEEQKKGLYTDIY 716 I ++ +E +R+NLLR+ISHDLRTPLT I G + L+ L +E ++ L I Sbjct: 655 EQRQIVIESAKEKMRSNLLRAISHDLRTPLTGIIGASSALLEKEDELDKETERNLIRGIK 714 Query: 717 DDSIWLIHLVENLLSISRIENGTLNLNFQAELMEEVISEALLHVNRNSEKHVIHTKLDDE 776 DDS WLI +VENLLS++RI G ++L E +EE++ EA+ + + IH K+ + Sbjct: 715 DDSGWLIRMVENLLSVTRISEGLVSLERAPEAVEEIVGEAVGRIKKRFRDRTIHVKVPRD 774 Query: 777 LLMARMDSRLIVQVLINIVDNAIKYTQQGSHITVSARQDGHRVIVEISDDGPGISEEAKA 836 LLM MD LI QVLIN+++NA+++ G+ + V + I + D+G GI E A Sbjct: 775 LLMVPMDGTLIEQVLINLMENALRHGGTGAEVWVDVTKTKQSAIFSVRDNGKGIPENRLA 834 Query: 837 RLFEMFFTADNIXXXXXXXXXXXXSLCKSIVNAHGGTIGVRDNVPKGTVFYFTL 890 LF+ F S+C SI+ AH GT+ ++N G F+FTL Sbjct: 835 DLFDTFAVEARERSDMSRGLGLGLSICMSIIRAHDGTLEAKNNKHGGATFWFTL 888 >ref|NP_472155.1| similar to the two components sensor protein kdpD [Listeria innocua] pir||AE1785 the two components sensor protein kdpD homolog lin2827 [imported] - Listeria innocua (strain Clip11262) emb|CAC98053.1| lin2827 [Listeria innocua] Length = 896 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/870 (40%), Positives = 509/870 (58%), Gaps = 9/870 (1%) Query: 25 GRLKIFIGYAPGAGKTCAMLKAAHEEQKEGTDVVGGFIETHARPDTLAMLEGLELVPPIK 84 G+LKI+ G+A G GKT AML A ++ G DVV G+IE HAR +TL MLEG+ ++PP Sbjct: 24 GKLKIYFGFAAGVGKTYAMLSDAKDQLAAGVDVVAGYIEPHAREETLRMLEGIPIIPPKA 83 Query: 85 MSYEASVIPEFDLDRALQRSPELILLDDLAHANTAGCRHKKRYQDVEELLRAGIHVYTTI 144 ++++ + EFDLD AL+R PELIL+D+LAH N +G R+KKR+QDVEELL+AGI VYTT+ Sbjct: 84 INHKNIALKEFDLDEALKRKPELILVDELAHTNASGVRNKKRFQDVEELLQAGIDVYTTV 143 Query: 145 NVQQIESLTDIVYSITGMTVQERIPDSVFDSADQVELVDIEPNDLIDRLHKGKIYRDNAD 204 NVQ IESL DIV IT + V+E IPD VFD AD+V+L+DIEP++L+ RL +GKIY+ Sbjct: 144 NVQHIESLNDIVEGITKVAVRETIPDYVFDEADRVKLIDIEPDELLKRLEQGKIYQPARA 203 Query: 205 EQAMGQLFTKEKLTALREIALRNTASQLNRIAIQISEQAKKNDYDTKDHILVCLSSAASN 264 + AM FT+E L LREIA+R A +RI+ + + + LVC+ ++ S+ Sbjct: 204 KTAMQNFFTRENLKLLREIAMRKAA---DRISHEYDQTGIYPEKRASSKWLVCIGTSPSS 260 Query: 265 KKVIRAAARMAEAFHGQFTALFVETPQTQKLTQKNKTELRDNLRLAEQMGANIATVYGED 324 K+IR AR AEAF +TAL++E + +T+ K LR+ + LAE++GA I T+ G D Sbjct: 261 AKLIRWTARTAEAFRAPWTALYIENEENDYMTKAEKKCLRETMELAERLGAEIVTLAGHD 320 Query: 325 VPGQIAEYAKTSRVSKIVLGRSPFKK--RGYAKSNLVDKLTTLLPNIEIYIIPYTQPSFY 382 + +AEYA+ + V+ IV+G+S + R + + D+L T L N++++IIP +QP Sbjct: 321 IAETVAEYARLTGVTNIVVGKSRRRMGLRSLFEEDFEDRLITHLDNVDMHIIPSSQPQTK 380 Query: 383 KRLPLYARYPK-LSLADTNKTIAILVVCTLIGIWFRYLGFLESNIITVYILGVLLSAIVT 441 KR + R+ LS D K I +L + T I + G + N+I VYIL VL+ + VT Sbjct: 381 KR-RMKIRFKSFLSWHDMAKMILLLALATAICVGLSEFGIGDQNVIMVYILSVLIISRVT 439 Query: 442 KGRVYSAVSSVMSVLVFNYFFTEPYYSLNAYEAGYPVTFLVMLAASFITSTLTMRVSEQA 501 G VY + S++ V++FN+FFT P Y+ N +AGYPVTF +ML + ITS LT+R+ QA Sbjct: 440 SGYVYGVMGSIIGVMLFNFFFTTPLYTFNTIQAGYPVTFGIMLLVALITSALTVRIKTQA 499 Query: 502 RQSAQKAYRTEVLLETSRKLQQAKDSPAIIDEMARQMVKLLDRTVIFYSVQEGALSAPLI 561 + ++ RTEVL E +++L ++ IID ++ L R+VIFYS + + Sbjct: 500 SLAVERERRTEVLYEINKRLLVIRNLKGIIDLTNEYILHLFSRSVIFYSADPAKSNKGIF 559 Query: 562 FPKEGSEVDPHTYTGSNERAVADWVLKNNKRAGATTDTFFGANCLYHAVRGGDTVFAVAA 621 EG E D ++E AVA WV KN KRAGA TDT GA Y V V V Sbjct: 560 VQAEGKE-DASALLSADEEAVAHWVFKNKKRAGAGTDTLMGAFGYYMPVMSQGKVLGVIG 618 Query: 622 IVMEQEE-PLEVFEKGLMIAMXXXXXXXXXXXXXXXXXXXISMQIQQEHLRANLLRSISH 680 + E+ PL + + + I ++ +E +R+NLLR+ISH Sbjct: 619 VSCSPEDGPLTQDNRIFLRMISSQVALALERQYLSEEQRQIVIESAKEKMRSNLLRAISH 678 Query: 681 DLRTPLTSISGNAGILVGNSGVLSEEQKKGLYTDIYDDSIWLIHLVENLLSISRIENGTL 740 DLRTPLT I G + L+ L +E + L I DDS WLI +VENLLS++RI G + Sbjct: 679 DLRTPLTGIVGASSALLEKETELDKETEHNLIKGIKDDSGWLIRMVENLLSVTRISEGLV 738 Query: 741 NLNFQAELMEEVISEALLHVNRNSEKHVIHTKLDDELLMARMDSRLIVQVLINIVDNAIK 800 +L E +EE++ EA+ + + IH K+ +LLM MD LI QVLIN+++NA++ Sbjct: 739 SLERAPEAVEEIVGEAVGRIKKRFADRTIHVKVPRDLLMVPMDGTLIEQVLINLMENALR 798 Query: 801 YTQQGSHITVSARQDGHRVIVEISDDGPGISEEAKARLFEMFFTADNIXXXXXXXXXXXX 860 + + + V+ + I + D+G GI E LF+ F Sbjct: 799 HGGSDAEVWVNVTKTKKSAIFSVRDNGKGIPENRLPDLFDTFAVEARERSDMSRGLGLGL 858 Query: 861 SLCKSIVNAHGGTIGVRDNVPKGTVFYFTL 890 S+C SI+ AH GT+ ++N G F+FTL Sbjct: 859 SICMSIIRAHDGTLEAKNNEHGGATFWFTL 888 >ref|NP_350259.1| Sensor protein KdpD (ATPase containing sensor domain and histidine kinase domain) [Clostridium acetobutylicum] sp|P94608|KDPD_CLOAB Sensor protein kdpD pir||D97351 sensor protein KdpD (ATPase containing sensor domain and histidine kinase domain) [imported] - Clostridium acetobutylicum gb|AAK81599.1| Sensor protein KdpD (ATPase containing sensor domain and histidine kinase domain) [Clostridium acetobutylicum] Length = 900 Score = 594 bits (1532), Expect = e-168, Method: Compositional matrix adjust. Identities = 347/896 (38%), Positives = 528/896 (58%), Gaps = 22/896 (2%) Query: 11 ILEQLTGMKTGQRRGRLKIFIGYAPGAGKTCAMLKAAHEEQKEGTDVVGGFIETHARPDT 70 +L ++ + + RG+LKIF GYA G GKT AML+AAH ++ G D+V G+IE HAR DT Sbjct: 13 LLNKIDKEEKNKNRGKLKIFFGYAAGVGKTYAMLRAAHYMKELGKDIVIGYIEPHARMDT 72 Query: 71 LAMLEGLELVPPIKMSYEASVIPEFDLDRALQRSPELILLDDLAHANTAGCRHKKRYQDV 130 +++ +GL +P + Y+ ++ EFD+D+AL R PE+IL+D+LAH N R+KKR++D+ Sbjct: 73 MSLTKGLPQIPVKNIDYKGVILREFDVDKALLRKPEIILVDELAHTNAKSQRNKKRWKDI 132 Query: 131 EELLRAGIHVYTTINVQQIESLTDIVYSITGMTVQERIPDSVFDSADQVELVDIEPNDLI 190 EELL AGI VYTT+NVQ IESL DIV +IT ++V+E IPD VFD AD+VEL+DIEP++L+ Sbjct: 133 EELLDAGIDVYTTLNVQHIESLNDIVANITHVSVRETIPDKVFDDADKVELIDIEPDELL 192 Query: 191 DRLHKGKIYRDNADEQAMGQLFTKEKLTALREIALRNTASQLNRIAIQISEQAKKN--DY 248 R GKIYR ++A FTK L ALREIALR TA ++N I+I+ +K Sbjct: 193 KRFTDGKIYRKEQVKRAFNNFFTKNNLYALREIALRRTADRVN-FEIEIARLSKGQITVM 251 Query: 249 DTKDHILVCLSSAASNKKVIRAAARMAEAFHGQFTALFVETPQTQKLTQKNKTELRDNLR 308 T D IL C+ ++ S+ ++IR AARMAE++H ++ AL+V+T ++ L + +K L N Sbjct: 252 ATSDQILACIGTSPSSARIIRTAARMAESYHSKWIALYVDTGRS--LGKADKETLNANFN 309 Query: 309 LAEQMGANIATVYGEDVPGQIAEYAKTSRVSKIVLGRSPFKKRG-----YAKSNLVDKLT 363 L E +G + TV+GE+V QI YA+ +KIV+G++ K+ G YAK ++VDKL Sbjct: 310 LVELLGGELVTVHGENVADQIIRYAELRNTTKIVIGKN-HKRTGTLLHFYAK-DVVDKLM 367 Query: 364 TLLPNIEIYIIPYTQPSFYKR-----LPLYARYPKLSLADTNKTIAILVVCTLIGIWFRY 418 I++Y+IP S+Y+ L + K S+ D K I I+ + T I F Y Sbjct: 368 DSNSYIDVYMIP--NSSYYRDHKNSILSKISIQHKGSVKDVLKAIIIMAITTDIAELFSY 425 Query: 419 LGFLESNIITVYILGVLLSAIVTKGRVYSAVSSVMSVLVFNYFFTEPYYSLNAYEAGYPV 478 +GF + N+I ++ILGV++ + TKG++ +SS+ +VLVFNY FTEP S Y+ Y V Sbjct: 426 MGFKDVNVIMIFILGVIIVYMATKGQIMGIISSIAAVLVFNYRFTEPKNSFIVYDKSYLV 485 Query: 479 TFLVMLAASFITSTLTMRVSEQARQSAQKAYRTEVLLETSRKLQQAKDSPAIIDEMARQM 538 TF +M+ +FI +LT +V ++A+ S + RT+ L S KL A + ++ + + Sbjct: 486 TFPIMMIVAFIIGSLTNKVQKEAQDSNMREKRTQTLYIVSGKLLSAVGTSEVVSIGIKYI 545 Query: 539 VKLLDRTVIFY-SVQEGALSAPLIFPKEGSEVDPHTYTGSNERAVADWVLKNNKRAGATT 597 +L++R VI Y + LS P ++ K+ +E A A W N K +G T Sbjct: 546 SRLVNRNVICYLADTSNKLSTPFVYKKDKG-AKEEIIMSKDENAAAYWTFLNGKESGCGT 604 Query: 598 DTFFGANCLYHAVRGGDTVFAVAAIVMEQEEPLEVFEKGLMIAMXXXXXXXXXXXXXXXX 657 TF+ A Y ++ + V V + PL +K ++ + Sbjct: 605 STFYRAKGYYIPIKIKNKVLGVIGVSCPS-GPLRPQKKAVVDTVTGQIAIALDREILSKE 663 Query: 658 XXXISMQIQQEHLRANLLRSISHDLRTPLTSISGNAGILVGNSGVLSEEQKKGLYTDIYD 717 ++I++E LR+NLLRSISHDLR+PL I G A ++ N ++ E++K+ L IY+ Sbjct: 664 QEKSKVEIERERLRSNLLRSISHDLRSPLAGIKGAASTILENGELIDEKRKQELINGIYE 723 Query: 718 DSIWLIHLVENLLSISRIENGTLNLNFQAELMEEVISEALLHVNRNSEKHVIHTKLDDEL 777 D+ WLI L+ENLLS+++ + G + EL+EEV+SEA+ ++ + H I + +++ Sbjct: 724 DTEWLIRLIENLLSMTKFDEGNTKIKKDVELVEEVVSEAVQRSSKYFKNHKIKVSVPEDV 783 Query: 778 LMARMDSRLIVQVLINIVDNAIKYTQQGSHITVSARQDGHRVIVEISDDGPGISEEAKAR 837 +M MD LI QV+IN++DNA K++ +GS I + + V+ EI D+G GISE+ Sbjct: 784 IMVSMDGSLIEQVIINLLDNASKFSPKGSTIEIKVYEKKKDVVFEIIDEGQGISEDILPN 843 Query: 838 LFEMFFTADNIXXXXXXXXXXXXSLCKSIVNAHGGTIGVRDNVPKGTVFYFTLHAE 893 +F+ FFT + ++CKSIV AHGG I + G +F F + E Sbjct: 844 IFDRFFTNGSKISDSRRGVGLGLAICKSIVEAHGGKIEAVNKGSGGAIFKFNIPKE 899 >gb|AAB39095.1| KdpD [Clostridium acetobutylicum] Length = 900 Score = 574 bits (1480), Expect = e-162, Method: Compositional matrix adjust. Identities = 346/895 (38%), Positives = 525/895 (58%), Gaps = 20/895 (2%) Query: 11 ILEQLTGMKTGQRRGRLKIFIGYAPGAGKTCAMLKAAHEEQKEGTDVVGGFIETHARPDT 70 +L ++ + + RG+LKIF GYA G GKT AML+AAH ++ G D+V G+IE HAR DT Sbjct: 13 LLNKIDKEEKNKNRGKLKIFFGYAAGVGKTYAMLRAAHYMKELGKDIVIGYIEPHARMDT 72 Query: 71 LAMLEGLELVPPIKMSYEASVIPEFDLDRALQRSPELILLDDLAHANTAGCRHKKRYQDV 130 +++ +GL +P + Y+ ++ EFD+D+AL R PE+IL+D+LAH N R+KKR++D+ Sbjct: 73 MSLTKGLPQIPVKNIDYKGVILREFDVDKALLRKPEIILVDELAHTNAKSQRNKKRWKDI 132 Query: 131 EELLRAGIHVYTTINVQQIESLTDIVYSITGMTVQERIPDSVFDSADQVELVDIEPNDLI 190 EELL AGI VYTT+NVQ IESL DIV +IT ++V+E IPD VFD AD+VEL+DIEP++L+ Sbjct: 133 EELLDAGIDVYTTLNVQHIESLNDIVANITHVSVRETIPDKVFDDADKVELIDIEPDELL 192 Query: 191 DRLHKGKIYRDNADEQAMGQLFTKEKLTALREIALRNTASQLN-RIAIQISEQAKKNDYD 249 R GKIYR ++A FTK L ALREIALR TA ++N I I + + Sbjct: 193 KRFTDGKIYRKEQVKRAFNNFFTKNNLYALREIALRRTADRVNFEIEIARLSKGQITVMA 252 Query: 250 TKDHILVCLSSAASNKKVIRAAARMAEAFHGQFTALFVETPQTQKLTQKNKTELRDNLRL 309 T D IL C+ ++ S+ ++IR AARMAE++H ++ AL+V+T ++ L + +K L N L Sbjct: 253 TSDQILACIGTSPSSARIIRTAARMAESYHSKWIALYVDTGRS--LGKADKETLNANFNL 310 Query: 310 AEQMGANIATVYGEDVPGQIAEYAKTSRVSKIVLGRSPFKKRG-----YAKSNLVDKLTT 364 E +G + TV+GE+V QI YA+ +KIV+G++ K+ G YAK ++VDKL Sbjct: 311 VELLGGELVTVHGENVADQIIRYAELRNTTKIVIGKN-HKRTGTLLHFYAK-DVVDKLMD 368 Query: 365 LLPNIEIYIIPYTQPSFYKR-----LPLYARYPKLSLADTNKTIAILVVCTLIGIWFRYL 419 I++Y+IP S+Y+ L + K S+ D K I I+ + T I F Y+ Sbjct: 369 SNSYIDVYMIP--NSSYYRDHKNSILSKISIQHKGSVKDVLKAIIIMAITTDIAELFSYM 426 Query: 420 GFLESNIITVYILGVLLSAIVTKGRVYSAVSSVMSVLVFNYFFTEPYYSLNAYEAGYPVT 479 GF + N+I ++ILGV++ + TKG++ +SS+ +VLVFNY FTEP S Y+ Y VT Sbjct: 427 GFKDVNVIMIFILGVIIVYMATKGQIMGIISSIAAVLVFNYRFTEPKNSFIVYDKSYLVT 486 Query: 480 FLVMLAASFITSTLTMRVSEQARQSAQKAYRTEVLLETSRKLQQAKDSPAIIDEMARQMV 539 F +M+ +FI +LT +V ++A+ S + RT+ L S KL A + ++ + + Sbjct: 487 FPIMMIVAFIIGSLTNKVQKEAQDSNMREKRTQTLYIVSGKLLSAVGTSEVVSIGIKYIS 546 Query: 540 KLLDRTVIFY-SVQEGALSAPLIFPKEGSEVDPHTYTGSNERAVADWVLKNNKRAGATTD 598 +L++R VI Y + LS P ++ K+ +E A A W N K +G T Sbjct: 547 RLVNRNVICYLADTSNKLSTPFVYKKDKG-AKEEIIMSKDENAAAYWTFLNGKESGCGTS 605 Query: 599 TFFGANCLYHAVRGGDTVFAVAAIVMEQEEPLEVFEKGLMIAMXXXXXXXXXXXXXXXXX 658 TF+ A Y ++ + V V + PL +K ++ + Sbjct: 606 TFYRAKGYYIPIKIKNKVLGVIGVSCPS-GPLRPQKKAVVDTVTGQIAIALDREILSKEQ 664 Query: 659 XXISMQIQQEHLRANLLRSISHDLRTPLTSISGNAGILVGNSGVLSEEQKKGLYTDIYDD 718 ++I++E LR NLLRSISHDLR+PL I G A ++ N ++ E++K+ L IY+D Sbjct: 665 EKSKVEIERERLRRNLLRSISHDLRSPLAGIKGAASTILENGELIDEKRKQELINGIYED 724 Query: 719 SIWLIHLVENLLSISRIENGTLNLNFQAELMEEVISEALLHVNRNSEKHVIHTKLDDELL 778 + WLI L+ENLLS+++ + G + EL+EEV+SEA+ ++ + H I + ++++ Sbjct: 725 TEWLIRLIENLLSMTKFDEGNTKIKKDVELVEEVVSEAVQRSSKYFKNHKIKVSVPEDVI 784 Query: 779 MARMDSRLIVQVLINIVDNAIKYTQQGSHITVSARQDGHRVIVEISDDGPGISEEAKARL 838 M MD LI QV+IN++DNA K++ +GS I + + V+ EI D+G GISE+ + Sbjct: 785 MVSMDGSLIEQVIINLLDNASKFSPKGSTIEIKVYEKKKDVVFEIIDEGQGISEDILPNI 844 Query: 839 FEMFFTADNIXXXXXXXXXXXXSLCKSIVNAHGGTIGVRDNVPKGTVFYFTLHAE 893 F+ FFT + ++CKSIV AHGG I + G +F F + E Sbjct: 845 FDRFFTNGSKISDSRRGVGLGLAICKSIVEAHGGKIEAVNKGSGGAIFKFNIPKE 899 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,181,797,210 Number of extensions: 46156877 Number of successful extensions: 151169 Number of sequences better than 1.0e-05: 3577 Number of HSP's gapped: 146741 Number of HSP's successfully gapped: 3609 Length of query: 899 Length of database: 757,237,578 Length adjustment: 135 Effective length of query: 764 Effective length of database: 390,699,213 Effective search space: 298494198732 Effective search space used: 298494198732 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)