BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0034.p (227 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_569204.1| pli0051 [Listeria innocua] >gi|16415834|emb|CAC... 320 2e-86 ref|NP_350258.1| KDP operon transcriptional regulatory protein K... 245 4e-64 ref|NP_286407.1| regulator of kdp operon (transcriptional effect... 211 1e-53 ref|NP_752709.1| KDP operon transcriptional Regulatory protein k... 211 1e-53 ref|ZP_00029679.1| COG0745: Response regulators consisting of a ... 210 2e-53 >ref|NP_569204.1| pli0051 [Listeria innocua] emb|CAC42049.1| pli0051 [Listeria innocua] Length = 240 Score = 320 bits (820), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 152/226 (67%), Positives = 185/226 (81%), Gaps = 1/226 (0%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VEDDK IRKLITTTLET+ Y ++TA+TG A++++ S QP+++ILDLGLPDMDG II++ Sbjct: 10 VEDDKAIRKLITTTLETRNYNFYTADTGNAALIQVTSRQPDIIILDLGLPDMDGTTIIQR 69 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDSDKL 120 +R WS +PIIVVSARSED DKI ALD GADD+LTKPFSVEELLAR+RVSLRR Y + + Sbjct: 70 VREWSQVPIIVVSARSEDSDKIVALDMGADDFLTKPFSVEELLARIRVSLRRRAYTNSE- 128 Query: 121 LKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEIWG 180 L + F+NG+LKI+Y V++ E EIHLTP EYKL+ LLAKNVG+VLTHNYI H+IWG Sbjct: 129 LSTQNVFINGDLKINYTLRAVYLAEIEIHLTPIEYKLVSLLAKNVGRVLTHNYITHQIWG 188 Query: 181 SPTVDIPSLRVFMATLRKKIEKTPVQFKYIQTHIGIGYRMLQVGDD 226 + DIP+LRVFMA LRKKIEK Q +YIQTH+GIGYRMLQV D+ Sbjct: 189 DYSNDIPALRVFMANLRKKIEKKSAQQRYIQTHVGIGYRMLQVSDN 234 >ref|NP_350258.1| KDP operon transcriptional regulatory protein KdpE (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum] pir||C97351 hypothetical protein CAC3677 [imported] - Clostridium acetobutylicum gb|AAB39096.1| KdpE [Clostridium acetobutylicum] gb|AAK81598.1| KDP operon transcriptional regulatory protein KdpE (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum] Length = 232 Score = 245 bits (626), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 120/222 (54%), Positives = 160/222 (72%), Gaps = 2/222 (0%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VEDDKPIR ITT L TQGYKY + G +I ++++ P+L++LDLGLPD+DG+++I K Sbjct: 10 VEDDKPIRNFITTALSTQGYKYSETDKGNEAIALSMANSPDLIVLDLGLPDIDGIEVIGK 69 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDSDKL 120 IR WS +PII+VSAR +R K+EALD GADDY+TKPF + ELLAR+RVSLR + K Sbjct: 70 IREWSKVPIIIVSARENERQKVEALDKGADDYITKPFGIGELLARIRVSLRHVNAGKAK- 128 Query: 121 LKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEIWG 180 K F NL +D+ V + +E+HLTP EYK++ LL K G+VLTHN+I++EIWG Sbjct: 129 DKSIDFFKVKNLSVDFEKRRVSVNGKEVHLTPIEYKIMFLLCKYSGRVLTHNFIINEIWG 188 Query: 181 SPT-VDIPSLRVFMATLRKKIEKTPVQFKYIQTHIGIGYRML 221 + + SLRVFMA LR+KIEK P Q +YI T +G+GYR++ Sbjct: 189 ASVGNENQSLRVFMANLRRKIEKDPAQPEYIYTEVGVGYRLI 230 >ref|NP_286407.1| regulator of kdp operon (transcriptional effector) [Escherichia coli O157:H7 EDL933] ref|NP_308749.1| transcriptional regulator of kdp operon [Escherichia coli O157:H7] pir||B90719 transcription regulator of kdp operon [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) pir||C85569 hypothetical protein kdpE [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gb|AAG55015.1| regulator of kdp operon (transcriptional effector) [Escherichia coli O157:H7 EDL933] dbj|BAB34145.1| transcriptional regulator of kdp operon [Escherichia coli O157:H7] Length = 225 Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 107/224 (47%), Positives = 154/224 (68%), Gaps = 9/224 (4%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VED++ IR+ + T LE G + + AET + +LEA + +P+L+ILDLGLPD DG++ I+ Sbjct: 7 VEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRD 66 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDS--D 118 +R WS +P+IV+SARSE+ DKI ALDAGADDYL+KPF + EL ARLRV+LRR + D Sbjct: 67 LRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATAAPD 126 Query: 119 KLLKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEI 178 L+K + ++ +D AA + GEEE+HLTP E++LL +L N GKVLT +L+++ Sbjct: 127 PLVKFS------DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 Query: 179 WGSPTVDIPS-LRVFMATLRKKIEKTPVQFKYIQTHIGIGYRML 221 WG V+ LR++M LR+K+E+ P + + T GIGYR + Sbjct: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPSHFITETGIGYRFM 224 >ref|NP_752709.1| KDP operon transcriptional Regulatory protein kdpE [Escherichia coli CFT073] gb|AAN79252.1| KDP operon transcriptional Regulatory protein kdpE [Escherichia coli CFT073] Length = 225 Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 107/224 (47%), Positives = 154/224 (68%), Gaps = 9/224 (4%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VED++ IR+ + T LE G + AET + +LEA + +P+L+ILDLGLPD DG++ I+ Sbjct: 7 VEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRD 66 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDS--D 118 +R WS +P+IV+SARSE+ DKI ALDAGADDYL+KPF + EL ARLRV+LRR + D Sbjct: 67 LRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTTPD 126 Query: 119 KLLKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEI 178 L+K + ++ +D AA + GEEE+HLTP E++LL +L N GKVLT +L+++ Sbjct: 127 PLVKFS------DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 Query: 179 WGSPTVDIPS-LRVFMATLRKKIEKTPVQFKYIQTHIGIGYRML 221 WG V+ LR++M LR+K+E+ P + ++ T GIGYR + Sbjct: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 >ref|ZP_00029679.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Burkholderia fungorum] Length = 249 Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 102/222 (45%), Positives = 151/222 (68%), Gaps = 4/222 (1%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 +ED+K IR+ + T LE +G H AETG+ ++EA + +P+L+I+DLGLPD DG+D+I++ Sbjct: 28 IEDEKQIRRFVRTALEGEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLPDTDGLDVIRE 87 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDSDKL 120 +R WS LP+IV+SAR+++ +K+ ALDAGADDYLTKPF V ELLAR+R +RR + Sbjct: 88 LRGWSELPVIVLSARTQETEKVAALDAGADDYLTKPFGVSELLARIRAHMRR---RNQGG 144 Query: 121 LKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEIWG 180 ++ G + +D A V +HLTP EY+LL L ++ G+VLTH +L E+WG Sbjct: 145 ANESPQVRFGTVTVDLALRQVSRDGAAVHLTPIEYRLLATLVRHAGRVLTHRQLLREVWG 204 Query: 181 SPTVDIPS-LRVFMATLRKKIEKTPVQFKYIQTHIGIGYRML 221 V+ LR++MA LR K+E+ P Q ++I T G+GYR++ Sbjct: 205 PSHVESHHYLRIYMAHLRGKLERDPAQPEHIITETGVGYRLV 246 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 338,814,455 Number of extensions: 13594153 Number of successful extensions: 52426 Number of sequences better than 1.0e-05: 5385 Number of HSP's gapped: 48620 Number of HSP's successfully gapped: 5445 Length of query: 227 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 106 Effective length of database: 428,710,599 Effective search space: 45443323494 Effective search space used: 45443323494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)