BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0029.p (176 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_977135.1| potassium-transporting ATPase, C subunit [Bacil... 224 5e-58 ref|NP_654686.1| KdpC, K+-transporting ATPase, c chain [Bacillus... 224 9e-58 ref|NP_830545.1| Potassium-transporting ATPase C chain [Bacillus... 220 1e-56 ref|NP_569208.1| pli0055 [Listeria innocua] >gi|16415838|emb|CAC... 172 3e-42 ref|NP_350261.1| K+-transporting ATPase, c chain [Clostridium ac... 162 4e-39 >ref|NP_977135.1| potassium-transporting ATPase, C subunit [Bacillus cereus ATCC 10987] gb|AAS39743.1| potassium-transporting ATPase, C subunit [Bacillus cereus ATCC 10987] Length = 193 Score = 224 bits (572), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 107/167 (64%), Positives = 132/167 (79%) Query: 5 LAYQLVVTGIAQAVMPDKADGSLIYNDKHEVIGSKWIGQNFTSPGYFHGRISSIEYNAVS 64 L Y L+VTGIAQAVM D ADGSLIYNDK+EVIGSK IGQNFT P YFHGR+SSIEY A + Sbjct: 24 LVYPLIVTGIAQAVMKDNADGSLIYNDKNEVIGSKLIGQNFTDPRYFHGRVSSIEYKAEA 83 Query: 65 SGTPNYAPSNPDMLERTKASVEAWKSENPGIPVSELPVDLITNSGSGLDPHISVEAAQVQ 124 SG+ NYAPSNPD+ +R + S+E WK +NP +PV+E+P+DL+TNSGSGLDP IS +AA VQ Sbjct: 84 SGSNNYAPSNPDLEKRVEKSIEEWKKQNPTVPVTEVPIDLVTNSGSGLDPDISPKAASVQ 143 Query: 125 IPRISKSTGISEEQLKELVAKHTQERELGVLGERVVNVLLLNIDVQK 171 + RISK T I +E L +L+ T+ LG+ GE VNVL LN+++QK Sbjct: 144 VERISKITNIPKETLNQLIKDQTEGAALGLFGETRVNVLKLNLELQK 190 >ref|NP_654686.1| KdpC, K+-transporting ATPase, c chain [Bacillus anthracis A2012] ref|NP_843266.1| potassium-transporting ATPase, C subunit [Bacillus anthracis str. Ames] gb|AAP24752.1| potassium-transporting ATPase, C subunit [Bacillus anthracis str. Ames] Length = 193 Score = 224 bits (570), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 107/167 (64%), Positives = 131/167 (78%) Query: 5 LAYQLVVTGIAQAVMPDKADGSLIYNDKHEVIGSKWIGQNFTSPGYFHGRISSIEYNAVS 64 L Y L+VTGIAQAVM D ADGSLIYNDK+EVIGSK IGQNFT P YFHGR+SSIEY A + Sbjct: 24 LVYPLIVTGIAQAVMKDNADGSLIYNDKNEVIGSKLIGQNFTDPRYFHGRVSSIEYKAEA 83 Query: 65 SGTPNYAPSNPDMLERTKASVEAWKSENPGIPVSELPVDLITNSGSGLDPHISVEAAQVQ 124 SG+ NYAPSNPD+ +R + S+E WK +NP +PV+E+P+DL+TNSGSGLDP IS +AA VQ Sbjct: 84 SGSNNYAPSNPDLEKRVEKSIEEWKKQNPSVPVTEVPIDLVTNSGSGLDPDISPKAASVQ 143 Query: 125 IPRISKSTGISEEQLKELVAKHTQERELGVLGERVVNVLLLNIDVQK 171 + RISK T I +E L +L+ T+ LG+ GE VNVL LN+ +QK Sbjct: 144 VERISKLTNIPKETLDQLIKDQTEGAALGLFGETRVNVLKLNLGLQK 190 >ref|NP_830545.1| Potassium-transporting ATPase C chain [Bacillus cereus ATCC 14579] gb|AAP07746.1| Potassium-transporting ATPase C chain [Bacillus cereus ATCC 14579] Length = 193 Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 105/167 (62%), Positives = 131/167 (78%) Query: 5 LAYQLVVTGIAQAVMPDKADGSLIYNDKHEVIGSKWIGQNFTSPGYFHGRISSIEYNAVS 64 L Y L+VTGIAQAVM D ADGSLIYNDK+EVIGSK IGQNFT P YF GR+SSIEY A + Sbjct: 24 LVYPLIVTGIAQAVMKDNADGSLIYNDKNEVIGSKLIGQNFTDPRYFQGRVSSIEYKAEA 83 Query: 65 SGTPNYAPSNPDMLERTKASVEAWKSENPGIPVSELPVDLITNSGSGLDPHISVEAAQVQ 124 SG+ NYAPSNPD+ +R + S+E WK +NP +PV+E+P+DL+TNSGSGLDP IS +AA VQ Sbjct: 84 SGSNNYAPSNPDLEKRVEKSIEEWKKQNPSVPVTEVPIDLVTNSGSGLDPDISPKAASVQ 143 Query: 125 IPRISKSTGISEEQLKELVAKHTQERELGVLGERVVNVLLLNIDVQK 171 + RISK T I +E+L +L+ T+ LG+ GE VNVL LN+ +Q+ Sbjct: 144 VDRISKLTDIPKEKLNQLIKDQTEGAALGLFGETRVNVLKLNLALQE 190 >ref|NP_569208.1| pli0055 [Listeria innocua] emb|CAC42053.1| pli0055 [Listeria innocua] Length = 212 Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 86/185 (46%), Positives = 128/185 (69%), Gaps = 16/185 (8%) Query: 1 MIIILAYQLVVTGIAQAVMPDKADGSLIY-NDKHEVIGSKWIGQNFTSPGYFHGRISSI- 58 +I L Y LV+ G+++ V P++A+GSL+ ND V+GSK IGQ+F+ G+ H R S++ Sbjct: 20 VICGLIYPLVLMGVSKVVFPEQANGSLVRIND--SVVGSKLIGQSFSGEGFLHSRPSAVN 77 Query: 59 ------------EYNAVSSGTPNYAPSNPDMLERTKASVEAWKSENPGIPVSELPVDLIT 106 +YN V+SG+ NYA +NPD+ +RT ++ + ENP I +E+P DL+T Sbjct: 78 YNTYTVQEKKDYKYNGVASGSSNYAMTNPDLTKRTNKDIKTFLRENPTIKKNEIPTDLVT 137 Query: 107 NSGSGLDPHISVEAAQVQIPRISKSTGISEEQLKELVAKHTQERELGVLGERVVNVLLLN 166 +SGSGLDPHIS +AA +QIP +SK TGISE++LK++V T+E+ +G+ GER VNVL +N Sbjct: 138 SSGSGLDPHISPQAAAIQIPSVSKKTGISEKKLKKIVRDSTEEKFIGIFGERTVNVLEVN 197 Query: 167 IDVQK 171 +D+ K Sbjct: 198 VDIVK 202 >ref|NP_350261.1| K+-transporting ATPase, c chain [Clostridium acetobutylicum] pir||F97351 K+-transporting ATPase, c chain CAC3680 [imported] - Clostridium acetobutylicum gb|AAK81601.1| K+-transporting ATPase, c chain [Clostridium acetobutylicum] Length = 205 Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 83/181 (45%), Positives = 120/181 (66%), Gaps = 13/181 (7%) Query: 1 MIII--LAYQLVVTGIAQAVMPDKADGSLIYNDKHEVIGSKWIGQNFTSPGYFHGRISSI 58 +III L Y L +T + Q V +KA+GS++ EV GS +GQNFT +F GR+SS+ Sbjct: 15 LIIICGLIYPLFITAVGQTVFHNKANGSIVTFKGKEV-GSALLGQNFTDKRFFRGRVSSV 73 Query: 59 EYNA----------VSSGTPNYAPSNPDMLERTKASVEAWKSENPGIPVSELPVDLITNS 108 YN V+SG+ N APSN D+ R K ++ + +PG+ E+P DL+T+S Sbjct: 74 NYNTYTKNDSNKDEVASGSQNLAPSNKDLKNRVKKDIDDFLKTHPGVKKDEIPTDLLTSS 133 Query: 109 GSGLDPHISVEAAQVQIPRISKSTGISEEQLKELVAKHTQERELGVLGERVVNVLLLNID 168 GSGLDP IS +AA++Q+P +SK+TGIS+ +LK+++ K T+ R LGVLGE VNVL +N++ Sbjct: 134 GSGLDPDISPKAAEIQVPSVSKATGISQSKLKQIIKKCTEGRTLGVLGEERVNVLKVNLE 193 Query: 169 V 169 V Sbjct: 194 V 194 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.312 0.131 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 269,121,415 Number of extensions: 10861352 Number of successful extensions: 26999 Number of sequences better than 1.0e-05: 88 Number of HSP's gapped: 26829 Number of HSP's successfully gapped: 88 Length of query: 176 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 59 Effective length of database: 439,570,995 Effective search space: 25934688705 Effective search space used: 25934688705 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 121 (51.2 bits)