BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0028.p (788 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_923516.1| potassium-transporting P-type ATPase D chain [G... 500 e-140 ref|NP_623583.1| Osmosensitive K+ channel His kinase sensor doma... 353 1e-95 ref|NP_623713.1| Osmosensitive K+ channel His kinase sensor doma... 327 6e-88 ref|NP_654687.1| KdpD, Osmosensitive K+ channel His kinase senso... 324 6e-87 ref|NP_843267.1| sensor histidine kinase KdpD [Bacillus anthraci... 324 6e-87 >ref|NP_923516.1| potassium-transporting P-type ATPase D chain [Gloeobacter violaceus] dbj|BAC88511.1| potassium-transporting P-type ATPase D chain [Gloeobacter violaceus PCC 7421] Length = 754 Score = 500 bits (1287), Expect = e-140, Method: Compositional matrix adjust. Identities = 295/775 (38%), Positives = 450/775 (58%), Gaps = 34/775 (4%) Query: 6 NFKRKSPEEILLSISKLHRGRLKIFIGAVSGSGKTYHMLREGTALQQQGIDVVICAVSTL 65 N P+ +L + +L RGRLK+++G G GKT ML+E L+++G+D+V+ V T Sbjct: 5 NEDCPDPQSLLHELMQLSRGRLKLYLGYTPGVGKTVRMLQEARRLRRRGVDLVVGWVETH 64 Query: 66 QRPETIEQIGQLERIPSIHWVHDGTEKKDLNVEALIQRNPEVVLVDGLAHRNRPDAVHKT 125 RP+T + LE + + G +L++EA++QR P VL+D LAH N P + H+ Sbjct: 65 GRPDTEALLADLEVMAPRQVAYQGVIIPELDLEAILQRRPATVLIDELAHTNAPGSRHRK 124 Query: 126 RLEDIHFLLGHGISVITTVNVYELEGVRELAQKYMGIEVEETVSAHTLELADEIRLIDVT 185 R ED+ LL G+SV++ +N+ LE V E A + +G V ETV L A+E++L+D + Sbjct: 125 RYEDVEVLLDAGVSVMSAMNIQHLESVAEAAGRLIGAVVHETVPDRLLRSAEEVQLVDAS 184 Query: 186 PETLLQRVSEGHVRN--SKTAALFQRGTLGVLRELALRLVAEGVNDSLEKHREQMGMLGP 243 PE +L+R+ G + +R TL LRELALR VAE V+ + + G+ GP Sbjct: 185 PEAVLERLQRGDAARYIPPGSPFLRRSTLVYLRELALRAVAEVVDADILSGKN--GVAGP 242 Query: 244 SGAAERILVSTQYHWNGSIYVRRGQQVAKRLNGELIIITFTNPKRPLTKEQAAFKESLVK 303 +G ER+L + + + +RRG ++A+RL+ EL + + RPL +A + Sbjct: 243 AGVRERVLAAVSTNPASARLIRRGARIAERLDAELFV-AYVETGRPLAPPEAQTLQEHRA 301 Query: 304 LVRKVGAAFEELPFHSRRRLPERLIQYALEHNVTRIMLGHSRQSRWQEFWQGSVVNDIIR 363 F +L R + LI +AL+ N+T++++G S +S +E +GSV+N ++R Sbjct: 302 ATEAAAGEFVQL---QNRDVAGALIDFALQKNITQVIVGESLRSPAEELVRGSVINTLLR 358 Query: 364 KSRNMDIFMVADRAEHQGERILPAKLAVP-ADNPLYHRLSSREVDEKIGRIRRGRFKVFI 422 + N+D+ +V + + P P A L SR GR K+++ Sbjct: 359 TTSNIDVLIVGEAESSMVGPLTPVAAQPPFAVGCLLVGADSRRAHGC------GRHKIYL 412 Query: 423 GAAPGVGKTYTMLREGNHLLKKGVDVVIGLLETHGRQETGQQVAELPFIERAKIKYSETV 482 GAAPGVGKT+ ML+E +HL G+DVV G++ETHGR ET + L + + I Y Sbjct: 413 GAAPGVGKTFAMLQEAHHLHASGIDVVCGVIETHGRAETAALIENLEVVPKRAIGYQGRT 472 Query: 483 LEEMDTGAILRRNPEVVLVDELAHTNVPGSKYKKRYEDVMEILNAGISVISTVNVQHLES 542 E+D A+LRR P VVLVDELAHTN+ G+ KR++DV +L AGI V+ST+N+QHLES Sbjct: 473 FLELDVEAVLRRRPAVVLVDELAHTNIAGAGNTKRFQDVEVLLGAGIDVVSTLNIQHLES 532 Query: 543 LNDAVAQITGVRVRETVPDSILRLADEVELIDVAPQALQARMKDGKIYAREKIDQALDNF 602 LN V + TGV+VRET+PD ++ ADEV L+D+ L R+++GKIYA+ K++QAL NF Sbjct: 533 LNTLVERTTGVKVRETLPDLVVEAADEVVLVDLPTGELTQRLREGKIYAQAKVEQALANF 592 Query: 603 FKIGNLIALRELSLREIADDVDER-LEAWERVSSLRGPWNKQEVIFVCVKLSQSAGKLIR 661 F+ NL ALREL+LRE+ADD R LE + GP + + VC+ L +A +LIR Sbjct: 593 FRPENLSALRELALREVADDCTTRKLE-----EAAHGPGGR---VLVCINLRPNAEQLIR 644 Query: 662 RGFRTAFRLKADWIVAYVHSAKELTEDELKMKASIE---NLTLRLGGKFEMISSSGPSSR 718 RG R A RL A +VA++ + D+ ++E LT +LGG+F I +++ Sbjct: 645 RGARIASRLSAPLVVAHIGA-----HDDGPTARAVERLGELTRQLGGEF--IERPAAANQ 697 Query: 719 LAEVIQAKADEHHATQLIIGQCDRPAWKRLWEGTIIKKLLRTARHMDILIVANYD 773 + E I A A E T L++G+ R W++L G +I++++R R++D+LIV + + Sbjct: 698 VPEQIDALAHEQGVTLLVMGESRRSRWEKLLHGCVIEQVVRRVRNLDVLIVGDLE 752 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/374 (37%), Positives = 225/374 (60%), Gaps = 9/374 (2%) Query: 412 RIRRGRFKVFIGAAPGVGKTYTMLREGNHLLKKGVDVVIGLLETHGRQETGQQVAELPFI 471 ++ RGR K+++G PGVGKT ML+E L ++GVD+V+G +ETHGR +T +A+L + Sbjct: 20 QLSRGRLKLYLGYTPGVGKTVRMLQEARRLRRRGVDLVVGWVETHGRPDTEALLADLEVM 79 Query: 472 ERAKIKYSETVLEEMDTGAILRRNPEVVLVDELAHTNVPGSKYKKRYEDVMEILNAGISV 531 ++ Y ++ E+D AIL+R P VL+DELAHTN PGS+++KRYEDV +L+AG+SV Sbjct: 80 APRQVAYQGVIIPELDLEAILQRRPATVLIDELAHTNAPGSRHRKRYEDVEVLLDAGVSV 139 Query: 532 ISTVNVQHLESLNDAVAQITGVRVRETVPDSILRLADEVELIDVAPQALQARMKDGKIYA 591 +S +N+QHLES+ +A ++ G V ETVPD +LR A+EV+L+D +P+A+ R++ G A Sbjct: 140 MSAMNIQHLESVAEAAGRLIGAVVHETVPDRLLRSAEEVQLVDASPEAVLERLQRGD--A 197 Query: 592 REKIDQALDNFFKIGNLIALRELSLREIADDVDERLEAWERVSSLRGPWNKQEVIFVCVK 651 I F + L+ LREL+LR +A+ VD + + + + + GP +E + V Sbjct: 198 ARYIPPG-SPFLRRSTLVYLRELALRAVAEVVDADILSGK--NGVAGPAGVRERVLAAVS 254 Query: 652 LSQSAGKLIRRGFRTAFRLKADWIVAYVHSAKELTEDELKMKASIENLTLRLGGKFEMIS 711 + ++ +LIRRG R A RL A+ VAYV + + L E + T G+F + Sbjct: 255 TNPASARLIRRGARIAERLDAELFVAYVETGRPLAPPEAQTLQEHRAATEAAAGEFVQLQ 314 Query: 712 SSGPSSRLAEVIQAKADEHHATQLIIGQCDRPAWKRLWEGTIIKKLLRTARHMDILIVAN 771 + + L + A + + TQ+I+G+ R + L G++I LLRT ++D+LIV Sbjct: 315 NRDVAGALIDF----ALQKNITQVIVGESLRSPAEELVRGSVINTLLRTTSNIDVLIVGE 370 Query: 772 YDPHIKRDILPEAS 785 + + + P A+ Sbjct: 371 AESSMVGPLTPVAA 384 >ref|NP_623583.1| Osmosensitive K+ channel His kinase sensor domain [Thermoanaerobacter tengcongensis] gb|AAM25187.1| Osmosensitive K+ channel His kinase sensor domain [Thermoanaerobacter tengcongensis] Length = 365 Score = 353 bits (905), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 176/366 (48%), Positives = 259/366 (70%), Gaps = 7/366 (1%) Query: 410 IGRIRRGRFKVFIGAAPGVGKTYTMLREGNHLLKKGVDVVIGLLETHGRQETGQQVAELP 469 I R +GR K+++GAAPGVGKTY ML++ N + K+G+DVVIG +ET+GR++T +Q+ +L Sbjct: 4 IERANKGRLKIYLGAAPGVGKTYHMLQDANEMKKRGIDVVIGFVETYGRKDTEEQIGDLE 63 Query: 470 FIERAKIKYSETVLEEMDTGAILRRNPEVVLVDELAHTNVPGSKYKKRYEDVMEILNAGI 529 I +I Y +L+EMD AI++R P+VV+VDELAHTN PGSK +KRY+DV+E+++ GI Sbjct: 64 IIPLKEINYKGVILKEMDLEAIIKRKPQVVVVDELAHTNAPGSKNEKRYQDVLELIDNGI 123 Query: 530 SVISTVNVQHLESLNDAVAQITGVRVRETVPDSILRLADEVELIDVAPQALQARMKDGKI 589 SV++ VN+QH ESLND V ++T V+VRET+PD IL LADE+E++DV+P+ L R+K+GKI Sbjct: 124 SVMTAVNIQHFESLNDYVNRMTNVKVRETIPDKILELADEIEVVDVSPETLIERLKNGKI 183 Query: 590 YAREKIDQALDNFFKIGNLIALRELSLREIADDVDERLEAWERVSSLRGPWNKQEVIFVC 649 Y+ +KI+ AL+NFF++GNL ALREL+LRE+A++VD+RL + + G QE I VC Sbjct: 184 YSPDKIETALNNFFRVGNLAALRELTLREVANEVDDRLLEYRNKKKVVGLKGAQEKILVC 243 Query: 650 VKLSQSAGKLIRRGFRTAFRLKADWIVAYVHSAKELTE-DELKMKASIENLTLRLGGKFE 708 V L +A LIRRG+R A LKAD V +V++ EL + LK I L +L KF Sbjct: 244 VNLRFNAEYLIRRGYRLAKMLKADLFVLHVYNDDELKDHKNLKKLDEITMLCNKLEAKFY 303 Query: 709 MISSSGPSSRLAEVIQAKADEHHATQLIIGQCDRPAWKRLWEGTIIKKLLRTARHMDILI 768 M+ S+ P A+ I A+E+ TQ+++GQ R + G+I++++++ + +D+L+ Sbjct: 304 MVKSNDP----AKAIIKFAEENAITQIVVGQSVRRRIDEIIRGSIVRRIMKGTKFIDVLV 359 Query: 769 VANYDP 774 VA DP Sbjct: 360 VA--DP 363 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 217/363 (59%), Gaps = 10/363 (2%) Query: 19 ISKLHRGRLKIFIGAVSGSGKTYHMLREGTALQQQGIDVVICAVSTLQRPETIEQIGQLE 78 I + ++GRLKI++GA G GKTYHML++ ++++GIDVVI V T R +T EQIG LE Sbjct: 4 IERANKGRLKIYLGAAPGVGKTYHMLQDANEMKKRGIDVVIGFVETYGRKDTEEQIGDLE 63 Query: 79 RIPSIHWVHDGTEKKDLNVEALIQRNPEVVLVDGLAHRNRPDAVHKTRLEDIHFLLGHGI 138 IP + G K++++EA+I+R P+VV+VD LAH N P + ++ R +D+ L+ +GI Sbjct: 64 IIPLKEINYKGVILKEMDLEAIIKRKPQVVVVDELAHTNAPGSKNEKRYQDVLELIDNGI 123 Query: 139 SVITTVNVYELEGVRELAQKYMGIEVEETVSAHTLELADEIRLIDVTPETLLQRVSEGHV 198 SV+T VN+ E + + + ++V ET+ LELADEI ++DV+PETL++R+ G + Sbjct: 124 SVMTAVNIQHFESLNDYVNRMTNVKVRETIPDKILELADEIEVVDVSPETLIERLKNGKI 183 Query: 199 RN-----SKTAALFQRGTLGVLRELALRLVAEGVNDSLEKHREQMGMLGPSGAAERILVS 253 + + F+ G L LREL LR VA V+D L ++R + ++G GA E+ILV Sbjct: 184 YSPDKIETALNNFFRVGNLAALRELTLREVANEVDDRLLEYRNKKKVVGLKGAQEKILVC 243 Query: 254 TQYHWNGSIYVRRGQQVAKRLNGELIIITFTNPKRPLTKEQAAFKESLVKLVRKVGAAFE 313 +N +RRG ++AK L +L ++ N + + + L K+ A F Sbjct: 244 VNLRFNAEYLIRRGYRLAKMLKADLFVLHVYNDDELKDHKNLKKLDEITMLCNKLEAKF- 302 Query: 314 ELPFHSRRRLPER-LIQYALEHNVTRIMLGHSRQSRWQEFWQGSVVNDIIRKSRNMDIFM 372 + + P + +I++A E+ +T+I++G S + R E +GS+V I++ ++ +D+ + Sbjct: 303 ---YMVKSNDPAKAIIKFAEENAITQIVVGQSVRRRIDEIIRGSIVRRIMKGTKFIDVLV 359 Query: 373 VAD 375 VAD Sbjct: 360 VAD 362 >ref|NP_623713.1| Osmosensitive K+ channel His kinase sensor domain [Thermoanaerobacter tengcongensis] gb|AAM25317.1| Osmosensitive K+ channel His kinase sensor domain [Thermoanaerobacter tengcongensis] Length = 380 Score = 327 bits (839), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 179/376 (47%), Positives = 244/376 (64%), Gaps = 8/376 (2%) Query: 398 YHRLSSREVDEKIGRIRRGRFKVFIGAAPGVGKTYTMLREGNHLLKKGVDVVIGLLETHG 457 Y RL+ E E + + +RG+ K+F+G APGVGKTY ML EGN LK+G DVVIG +ETHG Sbjct: 5 YRRLTPEEALEIVKKEQRGKLKIFLGYAPGVGKTYAMLNEGNRRLKRGQDVVIGYVETHG 64 Query: 458 RQETGQQVAELPFIERAKIKYSETVLEEMDTGAILRRNPEVVLVDELAHTNVPGSKYKKR 517 R++T Q+ L I R KI+Y +LEEMD AI+ R PEVVL+DELAHTN PGSK+KKR Sbjct: 65 RKDTEAQIGNLEIIPRKKIEYHGMILEEMDVDAIIARKPEVVLIDELAHTNAPGSKHKKR 124 Query: 518 YEDVMEILNAGISVISTVNVQHLESLNDAVAQITGVRVRETVPDSILRLADEVELIDVAP 577 YEDV EIL GI+V++T+N+QH+ESLND + QITG+ VRETVPDSI+ ADE+ +D+ P Sbjct: 125 YEDVQEILEHGINVLTTLNIQHIESLNDIIQQITGIAVRETVPDSIIDNADEIVAVDLTP 184 Query: 578 QALQARMKDGKIYAREKIDQALDNFFKIGNLIALRELSLREIADDVDERLEAWERVSSLR 637 AL R+K G +Y K+D+ L NFF+ GNL ALREL LR A++VD LE + + + Sbjct: 185 DALINRLKRGDVYPLSKLDECLSNFFRKGNLSALRELMLRLTAEEVDLELEEYMKEHGIE 244 Query: 638 GPWNKQEVIFVCVKLSQSAGKLIRRGFRTAFRLKADWIVAYVHS----AKELTEDELKMK 693 W E I VC+ + + KLIRRG R A R K DW+V YV A +LTE + ++ Sbjct: 245 DTWETNEKIMVCITPNPLSKKLIRRGARRARRFKCDWVVVYVDCTHFLAPKLTEKDKEVL 304 Query: 694 ASIENLTLRLGGKFEMISSSGPSSRLAEVIQAKADEHHATQLIIGQCDRPAWKRLWEGTI 753 S L +LG + + S L + A + H TQ+IIG R + L+ G+ Sbjct: 305 ESHFMLAKQLGAEVYTLRGKSVSDELLKF----AKKMHITQIIIGHSQRSWLQTLFRGST 360 Query: 754 IKKLLRTARHMDILIV 769 + KL++ A++++I ++ Sbjct: 361 VIKLIKKAKNIEIHVI 376 Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 222/377 (58%), Gaps = 15/377 (3%) Query: 7 FKRKSPEEILLSISKLHRGRLKIFIGAVSGSGKTYHMLREGTALQQQGIDVVICAVSTLQ 66 ++R +PEE L + K RG+LKIF+G G GKTY ML EG ++G DVVI V T Sbjct: 5 YRRLTPEEALEIVKKEQRGKLKIFLGYAPGVGKTYAMLNEGNRRLKRGQDVVIGYVETHG 64 Query: 67 RPETIEQIGQLERIPSIHWVHDGTEKKDLNVEALIQRNPEVVLVDGLAHRNRPDAVHKTR 126 R +T QIG LE IP + G ++++V+A+I R PEVVL+D LAH N P + HK R Sbjct: 65 RKDTEAQIGNLEIIPRKKIEYHGMILEEMDVDAIIARKPEVVLIDELAHTNAPGSKHKKR 124 Query: 127 LEDIHFLLGHGISVITTVNVYELEGVRELAQKYMGIEVEETVSAHTLELADEIRLIDVTP 186 ED+ +L HGI+V+TT+N+ +E + ++ Q+ GI V ETV ++ ADEI +D+TP Sbjct: 125 YEDVQEILEHGINVLTTLNIQHIESLNDIIQQITGIAVRETVPDSIIDNADEIVAVDLTP 184 Query: 187 ETLLQRVSEGHVR-----NSKTAALFQRGTLGVLRELALRLVAEGVNDSLEKHREQMGML 241 + L+ R+ G V + + F++G L LREL LRL AE V+ LE++ ++ G+ Sbjct: 185 DALINRLKRGDVYPLSKLDECLSNFFRKGNLSALRELMLRLTAEEVDLELEEYMKEHGIE 244 Query: 242 GPSGAAERILVSTQYHWNGSIYVRRGQQVAKRLNGELIIIT-----FTNPKRPLTKEQAA 296 E+I+V + +RRG + A+R + +++ F PK LT++ Sbjct: 245 DTWETNEKIMVCITPNPLSKKLIRRGARRARRFKCDWVVVYVDCTHFLAPK--LTEKDKE 302 Query: 297 FKESLVKLVRKVGAAFEELPFHSRRRLPERLIQYALEHNVTRIMLGHSRQSRWQEFWQGS 356 ES L +++GA L + + + L+++A + ++T+I++GHS++S Q ++GS Sbjct: 303 VLESHFMLAKQLGAEVYTL---RGKSVSDELLKFAKKMHITQIIIGHSQRSWLQTLFRGS 359 Query: 357 VVNDIIRKSRNMDIFMV 373 V +I+K++N++I ++ Sbjct: 360 TVIKLIKKAKNIEIHVI 376 >ref|NP_654687.1| KdpD, Osmosensitive K+ channel His kinase sensor domain [Bacillus anthracis A2012] Length = 381 Score = 324 bits (830), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 171/378 (45%), Positives = 252/378 (66%), Gaps = 9/378 (2%) Query: 396 PLYHRLSSREVDEKIGRIRRGRFKVFIGAAPGVGKTYTMLREGNHLLKKGVDVVIGLLET 455 P + R + E E I + RG+ K+++GAAPGVGK+Y ML + + K G+D+VIGL+ET Sbjct: 8 PTFQRRTPEEYLEYIRQQNRGKLKLYVGAAPGVGKSYKMLYDAREMKKDGMDIVIGLIET 67 Query: 456 HGRQETGQQVAELPFIERAKIKYSETVLEEMDTGAILRRNPEVVLVDELAHTNVPGSKYK 515 HGR+ET + +A+L + +I+Y V E+D I++R P+VV+VDELAH+NVPGSK K Sbjct: 68 HGRKETEEAIADLEKVPLKEIQYKGKVFYELDVEGIIKRAPQVVVVDELAHSNVPGSKNK 127 Query: 516 KRYEDVMEILNAGISVISTVNVQHLESLNDAVAQITGVRVRETVPDSILRLADEVELIDV 575 KRY DV E+++AGISV+S N+QHLES++D VAQIT V+VRE +PD IL+ A+E++L+D Sbjct: 128 KRYMDVQELIDAGISVLSAFNIQHLESVHDIVAQITNVKVRERIPDFILQKANEIQLVDA 187 Query: 576 APQALQARMKDGKIYAREKIDQALDNFFKIGNLIALRELSLREIADDVDERLEAWERVSS 635 P+ L+ R+ DGKIY EKI Q+L NFF + NL ALRELSLRE+ADD+DE++ + Sbjct: 188 TPEVLRKRLIDGKIYKEEKIQQSLQNFFTLNNLGALRELSLREVADDMDEKIS-----QT 242 Query: 636 LRGPWNKQEVIFVCVKLSQSAGKLIRRGFRTAFRLKADWIVAYVHSAK--ELTEDELKMK 693 + P +E I VCV+ S +A KLIRRG+R A RL A+ V V K L+ + + Sbjct: 243 VIEPIGVKEKILVCVQYSSTAEKLIRRGWRMADRLNAELYVLNVEREKIDSLSAGKKQTI 302 Query: 694 ASIENLTLRLGGKFEMISSSGPSSRLAEVIQAKADEHHATQLIIGQCDRPAWKRLWEGTI 753 ++LT + F + ++G + A+VI A TQ+++GQ R W + +G+I Sbjct: 303 EEWKSLTNQFDASFVLEEANG--RKPADVIIEVAKRLQVTQILLGQSARTRWDEIRKGSI 360 Query: 754 IKKLLRTARHMDILIVAN 771 + +++R +++DI IVA+ Sbjct: 361 VNEIMRETKYIDIHIVAD 378 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/377 (35%), Positives = 218/377 (57%), Gaps = 12/377 (3%) Query: 6 NFKRKSPEEILLSISKLHRGRLKIFIGAVSGSGKTYHMLREGTALQQQGIDVVICAVSTL 65 F+R++PEE L I + +RG+LK+++GA G GK+Y ML + +++ G+D+VI + T Sbjct: 9 TFQRRTPEEYLEYIRQQNRGKLKLYVGAAPGVGKSYKMLYDAREMKKDGMDIVIGLIETH 68 Query: 66 QRPETIEQIGQLERIPSIHWVHDGTEKKDLNVEALIQRNPEVVLVDGLAHRNRPDAVHKT 125 R ET E I LE++P + G +L+VE +I+R P+VV+VD LAH N P + +K Sbjct: 69 GRKETEEAIADLEKVPLKEIQYKGKVFYELDVEGIIKRAPQVVVVDELAHSNVPGSKNKK 128 Query: 126 RLEDIHFLLGHGISVITTVNVYELEGVRELAQKYMGIEVEETVSAHTLELADEIRLIDVT 185 R D+ L+ GISV++ N+ LE V ++ + ++V E + L+ A+EI+L+D T Sbjct: 129 RYMDVQELIDAGISVLSAFNIQHLESVHDIVAQITNVKVRERIPDFILQKANEIQLVDAT 188 Query: 186 PETLLQRVSEGHVRNSKT-----AALFQRGTLGVLRELALRLVAEGVNDSLEKHREQMGM 240 PE L +R+ +G + + F LG LREL+LR VA+ +++ + + + Sbjct: 189 PEVLRKRLIDGKIYKEEKIQQSLQNFFTLNNLGALRELSLREVADDMDEKISQ-----TV 243 Query: 241 LGPSGAAERILVSTQYHWNGSIYVRRGQQVAKRLNGELIIITFTNPK-RPLTKEQAAFKE 299 + P G E+ILV QY +RRG ++A RLN EL ++ K L+ + E Sbjct: 244 IEPIGVKEKILVCVQYSSTAEKLIRRGWRMADRLNAELYVLNVEREKIDSLSAGKKQTIE 303 Query: 300 SLVKLVRKVGAAFEELPFHSRRRLPERLIQYALEHNVTRIMLGHSRQSRWQEFWQGSVVN 359 L + A+F L + R+ + +I+ A VT+I+LG S ++RW E +GS+VN Sbjct: 304 EWKSLTNQFDASF-VLEEANGRKPADVIIEVAKRLQVTQILLGQSARTRWDEIRKGSIVN 362 Query: 360 DIIRKSRNMDIFMVADR 376 +I+R+++ +DI +VAD+ Sbjct: 363 EIMRETKYIDIHIVADQ 379 >ref|NP_843267.1| sensor histidine kinase KdpD [Bacillus anthracis str. Ames] gb|AAP24753.1| sensor histidine kinase KdpD [Bacillus anthracis str. Ames] Length = 384 Score = 324 bits (830), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 171/378 (45%), Positives = 252/378 (66%), Gaps = 9/378 (2%) Query: 396 PLYHRLSSREVDEKIGRIRRGRFKVFIGAAPGVGKTYTMLREGNHLLKKGVDVVIGLLET 455 P + R + E E I + RG+ K+++GAAPGVGK+Y ML + + K G+D+VIGL+ET Sbjct: 11 PTFQRRTPEEYLEYIRQQNRGKLKLYVGAAPGVGKSYKMLYDAREMKKDGMDIVIGLIET 70 Query: 456 HGRQETGQQVAELPFIERAKIKYSETVLEEMDTGAILRRNPEVVLVDELAHTNVPGSKYK 515 HGR+ET + +A+L + +I+Y V E+D I++R P+VV+VDELAH+NVPGSK K Sbjct: 71 HGRKETEEAIADLEKVPLKEIQYKGKVFYELDVEGIIKRAPQVVVVDELAHSNVPGSKNK 130 Query: 516 KRYEDVMEILNAGISVISTVNVQHLESLNDAVAQITGVRVRETVPDSILRLADEVELIDV 575 KRY DV E+++AGISV+S N+QHLES++D VAQIT V+VRE +PD IL+ A+E++L+D Sbjct: 131 KRYMDVQELIDAGISVLSAFNIQHLESVHDIVAQITNVKVRERIPDFILQKANEIQLVDA 190 Query: 576 APQALQARMKDGKIYAREKIDQALDNFFKIGNLIALRELSLREIADDVDERLEAWERVSS 635 P+ L+ R+ DGKIY EKI Q+L NFF + NL ALRELSLRE+ADD+DE++ + Sbjct: 191 TPEVLRKRLIDGKIYKEEKIQQSLQNFFTLNNLGALRELSLREVADDMDEKIS-----QT 245 Query: 636 LRGPWNKQEVIFVCVKLSQSAGKLIRRGFRTAFRLKADWIVAYVHSAK--ELTEDELKMK 693 + P +E I VCV+ S +A KLIRRG+R A RL A+ V V K L+ + + Sbjct: 246 VIEPIGVKEKILVCVQYSSTAEKLIRRGWRMADRLNAELYVLNVEREKIDSLSAGKKQTI 305 Query: 694 ASIENLTLRLGGKFEMISSSGPSSRLAEVIQAKADEHHATQLIIGQCDRPAWKRLWEGTI 753 ++LT + F + ++G + A+VI A TQ+++GQ R W + +G+I Sbjct: 306 EEWKSLTNQFDASFVLEEANG--RKPADVIIEVAKRLQVTQILLGQSARTRWDEIRKGSI 363 Query: 754 IKKLLRTARHMDILIVAN 771 + +++R +++DI IVA+ Sbjct: 364 VNEIMRETKYIDIHIVAD 381 Score = 227 bits (578), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 132/377 (35%), Positives = 218/377 (57%), Gaps = 12/377 (3%) Query: 6 NFKRKSPEEILLSISKLHRGRLKIFIGAVSGSGKTYHMLREGTALQQQGIDVVICAVSTL 65 F+R++PEE L I + +RG+LK+++GA G GK+Y ML + +++ G+D+VI + T Sbjct: 12 TFQRRTPEEYLEYIRQQNRGKLKLYVGAAPGVGKSYKMLYDAREMKKDGMDIVIGLIETH 71 Query: 66 QRPETIEQIGQLERIPSIHWVHDGTEKKDLNVEALIQRNPEVVLVDGLAHRNRPDAVHKT 125 R ET E I LE++P + G +L+VE +I+R P+VV+VD LAH N P + +K Sbjct: 72 GRKETEEAIADLEKVPLKEIQYKGKVFYELDVEGIIKRAPQVVVVDELAHSNVPGSKNKK 131 Query: 126 RLEDIHFLLGHGISVITTVNVYELEGVRELAQKYMGIEVEETVSAHTLELADEIRLIDVT 185 R D+ L+ GISV++ N+ LE V ++ + ++V E + L+ A+EI+L+D T Sbjct: 132 RYMDVQELIDAGISVLSAFNIQHLESVHDIVAQITNVKVRERIPDFILQKANEIQLVDAT 191 Query: 186 PETLLQRVSEGHVRNSKT-----AALFQRGTLGVLRELALRLVAEGVNDSLEKHREQMGM 240 PE L +R+ +G + + F LG LREL+LR VA+ +++ + + + Sbjct: 192 PEVLRKRLIDGKIYKEEKIQQSLQNFFTLNNLGALRELSLREVADDMDEKISQ-----TV 246 Query: 241 LGPSGAAERILVSTQYHWNGSIYVRRGQQVAKRLNGELIIITFTNPK-RPLTKEQAAFKE 299 + P G E+ILV QY +RRG ++A RLN EL ++ K L+ + E Sbjct: 247 IEPIGVKEKILVCVQYSSTAEKLIRRGWRMADRLNAELYVLNVEREKIDSLSAGKKQTIE 306 Query: 300 SLVKLVRKVGAAFEELPFHSRRRLPERLIQYALEHNVTRIMLGHSRQSRWQEFWQGSVVN 359 L + A+F L + R+ + +I+ A VT+I+LG S ++RW E +GS+VN Sbjct: 307 EWKSLTNQFDASF-VLEEANGRKPADVIIEVAKRLQVTQILLGQSARTRWDEIRKGSIVN 365 Query: 360 DIIRKSRNMDIFMVADR 376 +I+R+++ +DI +VAD+ Sbjct: 366 EIMRETKYIDIHIVADQ 382 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,096,378,219 Number of extensions: 44697646 Number of successful extensions: 130174 Number of sequences better than 1.0e-05: 89 Number of HSP's gapped: 129926 Number of HSP's successfully gapped: 175 Length of query: 788 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 654 Effective length of database: 393,414,312 Effective search space: 257292960048 Effective search space used: 257292960048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)