BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0020.p (1232 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_795270.1| hypothetical protein [Pseudomonas syringae pv. ... 59 5e-07 ref|ZP_00033224.1| COG3664: Beta-xylosidase [Burkholderia fungorum] 59 6e-07 ref|ZP_00021030.1| hypothetical protein [Chloroflexus aurantiacus] 59 6e-07 >ref|NP_795270.1| hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO58965.1| hypothetical protein PSPTO5546 [Pseudomonas syringae pv. tomato str. DC3000] Length = 448 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 69/168 (41%), Gaps = 6/168 (3%) Query: 789 LELGSFDYADAYSYHPYVYNAMPDDNLQNI----INGVKDLVNAYGGWK-DYYLTEGGWP 843 +E G+ D D S HPY + A D N + G + + G YLTE GWP Sbjct: 206 IESGALDLVDGLSVHPYAHCAANDGNTPEAWVRWLAGYEQHIRQKAGRAVPIYLTETGWP 265 Query: 844 TATAGYPSVSEETQRDYIVRAFLNYMVTDQIKAYEYYNYKNDGTDDRYYDIFWGLTDNDG 903 + G SE TQ Y+ R + +K +Y+ NDG D R + +GL + D Sbjct: 266 SHQ-GACGKSETTQALYMARLYFLARTVPNVKGMWWYDLYNDGPDRRDQEHNFGLLNEDL 324 Query: 904 RPKLAYTAVNQLMTTLDKSRYIGTWDTGNPDIAIHVFLNDGVPVITAW 951 PK AYT + + + Y T D+ F V+ AW Sbjct: 325 SPKPAYTMMKAIAPVVRDFTYDVQASTLTQDLYQLYFDKGDERVLVAW 372 >ref|ZP_00033224.1| COG3664: Beta-xylosidase [Burkholderia fungorum] Length = 612 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 103/471 (21%), Positives = 179/471 (38%), Gaps = 82/471 (17%) Query: 523 LALEAGAEAHNFQIDYTVRRADGDQAVVASGTKTYQMEK---------------YAKNTD 567 LA +G+ A Q+ + A G Q ASG K + E Y ++D Sbjct: 77 LAFSSGSYA---QVKLQLVNAPGSQVTPASGKKVLRFEVLPPDIPRATKITVGVYPYDSD 133 Query: 568 TVLFDPRL----NTIG------TYEVAAD------FRIDGVAQPAKSKKMRLTVINAAAP 611 + RL NTIG + VA FRI+ + + + T A Sbjct: 134 GKVLPTRLASYENTIGRMQDDKAFNVAVTIPRMGLFRIEATLKSPDGETLDKTTSTLAIV 193 Query: 612 VSQPDLDNESKFGLNTHYALNWNDD---IIDGARKMGARHHRSGITWDSVDKNVKDASGN 668 + +L FG+ TH+ + ++ ++ G R I WD+V+K +G Sbjct: 194 TKRTEL-GPPDFGVGTHFGQDGTPPPSVLLPLVKQAGFSWIRDDIYWDTVEKK----AGV 248 Query: 669 TVYDYSGTDPLLTKLFSYGFNQVTVLGIDKNAFYQQGTINTTSGLKA-----MGDFVANT 723 V+ D L G + + VL Y + + L D+V Sbjct: 249 FVFP-KRYDAYLALSKQLGISPLVVLDEGNPRAYPKLFSKSNFPLSPEARARFADYVDAV 307 Query: 724 VSRYKDQ---------IRQWEMPNEPEIFSKPYVPSEFVQLQKVAYLNMKQADQNAMLLA 774 V+RY D ++ WE+ NEP+ Y +++ L + +K + A ++A Sbjct: 308 VARYGDNAVTAPYGGAVQYWEVWNEPDFSKISY--ADYAALLWETFGAIKDVNPAASVIA 365 Query: 775 GDHTSSVLS----VLPKELELGSFDYADAYSYHPYVYNAMPDDNLQNIINGVKDLVNAYG 830 + + ++ G+ + +S HPY+ P+ + + D VN Sbjct: 366 CGGGGAGGGPGGDCVVGLIKEGALNDQSGFSIHPYMSPHTPEKGYKTEGAPI-DFVNIPT 424 Query: 831 GW---KDY--------------YLTEGGWPTATAGYPSVSEETQRDYIVRAFLNYMVTDQ 873 W +D+ ++TE GWP P E TQ +VR++L Sbjct: 425 VWPYLRDFTADHMKTDGRPLQVWVTEMGWPV-NPKEPGQDEATQAANLVRSYLLSRRYGT 483 Query: 874 IKAYEYYNYKNDGTDDRYYDIFWGLTDNDGRPKLAYTAVNQLMTTLDKSRY 924 ++ +Y++ +DGTD + +GL +D PK A+ A + L +T+ K + Sbjct: 484 VRVLFWYDFVDDGTDLDNIEHNFGLLHHDLTPKPAFVAASVLSSTVGKRAW 534 >ref|ZP_00021030.1| hypothetical protein [Chloroflexus aurantiacus] Length = 848 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 20/214 (9%) Query: 671 YDYSGTDPLLTKLFSYGFNQVTVLG----------IDKNAFYQQGTINTTSGLKAMGDFV 720 YD++ TD + +L G N V + D +QG+ + FV Sbjct: 39 YDWTFTDRAVNELTQRGINIVGLFNPAVGWGTPSPADDGIPPEQGSFYPPD-PQLFASFV 97 Query: 721 ANTVSRYKDQIRQWEMPNEPE---IFSKPYVPSEFVQLQKVAYLNMKQADQNAMLLAGDH 777 A V+RYKD+IR W++ NEP+ + P+ + L + Y +K AD A +LA Sbjct: 98 ATVVNRYKDRIRYWQVWNEPDNPVYWRPAPDPAAYAALLRAVYPAIKAADPGATVLAAGI 157 Query: 778 TS--SVLSVLPKELELGSFDYADAYSYHPYVYNAMPD-DNLQNIINGVKDLVNAYGGWKD 834 S S L + G+++ D + HPY P+ ++ ++ G + A G K Sbjct: 158 VSPEPAGSFLQALADNGAWNSFDIIALHPYTDPLGPEAGSIDSVGIGAIQTLAARLGPKP 217 Query: 835 YYLTEGGWPTATA---GYPSVSEETQRDYIVRAF 865 ++TE GW + + G S+ ETQ +Y++RA Sbjct: 218 IWVTEFGWADSESDRTGAQSIDGETQANYLIRAM 251 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,866,935,585 Number of extensions: 83113032 Number of successful extensions: 194870 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 194871 Number of HSP's successfully gapped: 4 Length of query: 1232 Length of database: 757,237,578 Length adjustment: 137 Effective length of query: 1095 Effective length of database: 385,269,015 Effective search space: 421869571425 Effective search space used: 421869571425 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)