BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0149.0001.p
         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_242095.1| BH1229~unknown conserved protein [Bacillus halo...    70   2e-11
ref|NP_390648.1| similar to hypothetical proteins [Bacillus subt...    69   5e-11
gb|EAB65658.1| unknown [environmental sequence]                        66   2e-10
ref|NP_660971.1| conserved hypothetical protein [Chlorobium tepi...    64   9e-10
ref|NP_742995.1| preprotein translocase, YajC subunit [Pseudomon...    64   9e-10

>ref|NP_242095.1| BH1229~unknown conserved protein [Bacillus halodurans]
 sp|Q9KDI4|YC29_BACHD Hypothetical protein BH1229
 pir||E83803 hypothetical protein BH1229 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB04948.1| BH1229~unknown conserved protein [Bacillus halodurans]
          Length = 88

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 46/80 (57%)

Query: 18 GLVGPXXXXXXXXXXXXIRPQQKKTKTRNAMLKALKKGDKVVTIGGLHGTIMEISDDIVV 77
          G + P            IRPQQK+ K    M   L++GDK+VTIGGLHGTI  + +  VV
Sbjct: 6  GFLIPLILMFAIFYFLLIRPQQKRQKQIQEMHNNLQRGDKIVTIGGLHGTIDSLDESTVV 65

Query: 78 LRVNDVTKLTFDRGSISHSV 97
          + VND  KLTFDR +I   V
Sbjct: 66 ILVNDNRKLTFDRSAIREVV 85


>ref|NP_390648.1| similar to hypothetical proteins [Bacillus subtilis]
 sp|O32052|YRBF_BACSU Hypothetical protein yrbF
 pir||E69972 conserved hypothetical protein yrbF - Bacillus subtilis
 emb|CAB14730.1| yrbF [Bacillus subtilis subsp. subtilis str. 168]
 emb|CAB75334.1| hypothetical protein [Bacillus subtilis]
          Length = 89

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 46/77 (59%)

Query: 17 LGLVGPXXXXXXXXXXXXIRPQQKKTKTRNAMLKALKKGDKVVTIGGLHGTIMEISDDIV 76
          LG + P            IRPQQK+ K    M + LKKGD VVTIGGLHGT+  I +  V
Sbjct: 6  LGTLVPIILMFAVLYFLLIRPQQKQQKAVRQMQEELKKGDSVVTIGGLHGTVDSIDESKV 65

Query: 77 VLRVNDVTKLTFDRGSI 93
          V++  D T+LTFDR +I
Sbjct: 66 VIKTGDNTRLTFDRRAI 82


>gb|EAB65658.1| unknown [environmental sequence]
          Length = 111

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 46/64 (71%), Gaps = 3/64 (4%)

Query: 35 IRPQQKKTKTRNAMLKALKKGDKVVTIGGLHGTIMEISD---DIVVLRVNDVTKLTFDRG 91
          IRPQ K+ K + AM+ ALKKGDK+VTIGG+HGTI    D     ++L+V+  TK+T +R 
Sbjct: 33 IRPQAKRQKEKQAMILALKKGDKIVTIGGIHGTIAGFKDKDKKTLLLQVDSNTKMTINRA 92

Query: 92 SISH 95
          S+S+
Sbjct: 93 SVSN 96


>ref|NP_660971.1| conserved hypothetical protein [Chlorobium tepidum TLS]
 gb|AAM71313.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 117

 Score = 63.9 bits (154), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 35  IRPQQKKTKTRNAMLKALKKGDKVVTIGGLHGTI--MEISDDIVVLRVNDVTKLTFDRGS 92
           IRPQQKK K R ++L  +K+GD+VVTIGG+HGT+  +E     V+++V D  K+ F+R +
Sbjct: 41  IRPQQKKQKERESLLNDIKRGDRVVTIGGIHGTVAGIETEKKTVLVQVADNVKIKFERSA 100

Query: 93  ISH 95
           I++
Sbjct: 101 IAN 103


>ref|NP_742995.1| preprotein translocase, YajC subunit [Pseudomonas putida KT2440]
 gb|AAN66459.1| preprotein translocase, YajC subunit [Pseudomonas putida KT2440]
          Length = 111

 Score = 63.9 bits (154), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 45/62 (72%)

Query: 36  RPQQKKTKTRNAMLKALKKGDKVVTIGGLHGTIMEISDDIVVLRVNDVTKLTFDRGSISH 95
           RPQ K+ K +  +L  L+KGD+VVT GG+ G I+++SDD VVL V+D  +L F +G+I+ 
Sbjct: 42  RPQAKRAKEQKNLLSNLQKGDEVVTNGGIAGKIVKVSDDFVVLEVSDTVELKFQKGAIAA 101

Query: 96  SV 97
           ++
Sbjct: 102 TL 103


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.135    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 120,128,146
Number of extensions: 3385799
Number of successful extensions: 10465
Number of sequences better than 1.0e-05: 159
Number of HSP's gapped: 10471
Number of HSP's successfully gapped: 159
Length of query: 104
Length of database: 757,237,578
Length adjustment: 71
Effective length of query: 33
Effective length of database: 564,465,549
Effective search space: 18627363117
Effective search space used: 18627363117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)