BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0147.0017.p (675 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00097516.1| COG0840: Methyl-accepting chemotaxis protein ... 217 8e-55 ref|NP_244768.1| methyl-accepting chemotaxis protein [Bacillus h... 213 1e-53 ref|NP_693651.1| methyl-accepting chemotaxis protein [Oceanobaci... 213 2e-53 ref|NP_831774.1| Methyl-accepting chemotaxis protein [Bacillus c... 207 7e-52 ref|ZP_00098128.1| COG0840: Methyl-accepting chemotaxis protein ... 206 1e-51 >ref|ZP_00097516.1| COG0840: Methyl-accepting chemotaxis protein [Desulfitobacterium hafniense] Length = 571 Score = 217 bits (552), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 219/361 (60%), Gaps = 1/361 (0%) Query: 316 YLTRMVVKPLVAISGVMKRVAEGHLS-ERVEVRSGDEIGQMSKSINDTVSSLSGIVGTID 374 Y+ RM+ PL + G ++ +A+G+L+ R+++ S DE+GQ++ N +L +V I Sbjct: 210 YIARMIANPLAQLVGTVREIAQGNLAVRRMDLISQDEVGQLAAEFNTMTDNLRVLVKNIA 269 Query: 375 ATVLQVAAAAEGLLEYANHSSNTSAEIATVIQEVAQGMEEQFKGSEQSARATEEMAVGLQ 434 T QVAA++E L A S++ + +IA I +VA G Q + +A E+M+ G+Q Sbjct: 270 YTSEQVAASSEELTASAEQSASATNQIAATITDVAAGATRQEAAIDDTASIVEQMSAGVQ 329 Query: 435 RIAESSVSVSDQAETVSAEVQNGYLEIQSTLEQMTVITTTAGQTADLIQTLTQQSEHIGQ 494 IA ++ +VS AE + G +++ + QM I T TA +++ L ++S+ IGQ Sbjct: 330 EIAANANTVSRSAEMTATAAGQGDKAVEAAVSQMKNIEITVAGTAQVVRQLGERSKEIGQ 389 Query: 495 IIDVISEIANQTGLLSLNASIEAARAGEHGRGFGVVANEVKKLAERTNASIVDIVDLIKQ 554 I+D IS IA QT LL+LNA+IEAARAGE GRGF VVA EV+KLAE++ + +I LI + Sbjct: 390 IVDAISGIAAQTNLLALNAAIEAARAGEQGRGFAVVAEEVRKLAEQSQEAAKEIAGLIAE 449 Query: 555 IQASTTNAAQSMEKSIAEIGDGMGKMKNVGISFEHIRSSIREVSMQIQDVSAINEEMSAG 614 IQ T +A +M E+ G + + G +F+ I + I EVS Q++++SA ++M++G Sbjct: 450 IQQETGSAVNAMHDGTREVKVGSEVVNSAGQAFKEIVNLIGEVSTQVREISAAIQQMASG 509 Query: 615 TEEITASVSDMLTIAKDSAENAQAVSYASSEQMELMKKVVDSAKSLNEMMSTLKGEIEKF 674 +++I S+ D+ I+ +++ Q VS A+ EQ M+++ S+++L +M L+ I KF Sbjct: 510 SQQIVDSIRDIEHISNEASSQTQTVSAATEEQSASMEQIAASSQALAKMADELQNSIGKF 569 Query: 675 R 675 R Sbjct: 570 R 570 >ref|NP_244768.1| methyl-accepting chemotaxis protein [Bacillus halodurans] pir||D84137 methyl-accepting chemotaxis protein BH3900 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07619.1| methyl-accepting chemotaxis protein [Bacillus halodurans] Length = 579 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 224/360 (62%), Gaps = 1/360 (0%) Query: 317 LTRMVVKPLVAISGVMKRVAEGHLS-ERVEVRSGDEIGQMSKSINDTVSSLSGIVGTIDA 375 ++RMVVKP+V +S K +AEG+L+ E ++V++ DEIG ++ S N V +L I+ + Sbjct: 219 VSRMVVKPVVMVSEAAKVIAEGNLTVEPLKVKNRDEIGDLAASFNLMVENLRKIILEVGN 278 Query: 376 TVLQVAAAAEGLLEYANHSSNTSAEIATVIQEVAQGMEEQFKGSEQSARATEEMAVGLQR 435 QVAA++E L A +S + +I + +Q V QG++ Q + E + + +M+ +++ Sbjct: 279 NAEQVAASSEQLTASAEETSKITEQIVSTVQTVTQGVDNQVEKVEYTHKIVGDMSEDIRK 338 Query: 436 IAESSVSVSDQAETVSAEVQNGYLEIQSTLEQMTVITTTAGQTADLIQTLTQQSEHIGQI 495 IAE++ VS + S + G I++ ++QMT+I + ++I+ + S+ I QI Sbjct: 339 IAENAKEVSTTSMEASEKSSAGKQVIETLVKQMTLINQSVSGLDEIIKGMRDNSKEINQI 398 Query: 496 IDVISEIANQTGLLSLNASIEAARAGEHGRGFGVVANEVKKLAERTNASIVDIVDLIKQI 555 + VI+EI++QT LL+LNA+IEAARAGE G+GF VVA+EV+KLAE+T+ S I +LI + Sbjct: 399 VKVITEISDQTNLLALNAAIEAARAGEAGKGFSVVADEVRKLAEQTSLSAKQISNLISNV 458 Query: 556 QASTTNAAQSMEKSIAEIGDGMGKMKNVGISFEHIRSSIREVSMQIQDVSAINEEMSAGT 615 Q T A QSME + E+ GMG G SFEHI ++ EV+ QIQ+VS ++++ GT Sbjct: 459 QKETDQAVQSMETTTEEVVSGMGLADTAGESFEHINQTVSEVTRQIQNVSDSVQKVATGT 518 Query: 616 EEITASVSDMLTIAKDSAENAQAVSYASSEQMELMKKVVDSAKSLNEMMSTLKGEIEKFR 675 ++ ++ + +++ SA+ V+ ++ EQM M++V ++ +L +M L+ I +F+ Sbjct: 519 RQMVETIDIVNDVSESSAKGMNEVAASTEEQMATMEEVAAASATLAKMAEELQELIGRFK 578 >ref|NP_693651.1| methyl-accepting chemotaxis protein [Oceanobacillus iheyensis HTE831] dbj|BAC14685.1| methyl-accepting chemotaxis protein (divided with OB2729 and OB2730) [Oceanobacillus iheyensis HTE831] Length = 540 Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 145/506 (28%), Positives = 271/506 (53%), Gaps = 10/506 (1%) Query: 170 LIVPVVDKKQQFSGAIAFSVTPDILNEMSKSIHVAESGYGYVVSGKGDYYAYSDMSRIGK 229 L+V V + SG +A ++ D + E++ +++ E GY ++ + Y G Sbjct: 44 LVVTVSKAMEDGSGVVALDLSIDYIQEIASGVNIGEDGY-VILLDQAQNIIYHPEQEAGT 102 Query: 230 NMADYAKEPELKKAVTAMLSRESGSETYTGEDGKTIITYYKTIPGTDWKLMINVPKSEIF 289 E E+ + ++G TYT ++ ++ T T WK++ + + EI Sbjct: 103 K-----GEEEIYSKI---YENKNGELTYTYHSDDKLL-HFDTNELTGWKVVGTMDRGEIK 153 Query: 290 AKVNAAQRXXXXXXXXXXXXXXXXXXYLTRMVVKPLVAISGVMKRVAEGHLSERVEVRSG 349 + + R V+KP+ A+ ++ G L++ ++VR+ Sbjct: 154 DMMLPVFWTTLGLVIGSTILGGIMILLIIRSVLKPIHALKETALIISTGDLTQTIDVRTN 213 Query: 350 DEIGQMSKSINDTVSSLSGIVGTIDATVLQVAAAAEGLLEYANHSSNTSAEIATVIQEVA 409 DEIGQ+ + N L ++ ++ QVAA+AE L A+ ++++ +++T IQEV+ Sbjct: 214 DEIGQLGMAFNQMQDGLKELIRDVEFNAQQVAASAEQLNANADQMTSSTEQVSTAIQEVS 273 Query: 410 QGMEEQFKGSEQSARATEEMAVGLQRIAESSVSVSDQAETVSAEVQNGYLEIQSTLEQMT 469 E Q G+E+SA + EE++ G+++I +S+ +VS E ++++ + G + +TLEQM Sbjct: 274 SSAESQLNGTEESANSLEEVSAGVEKIVDSATAVSGYVEEMNSQAEVGGQAVHNTLEQMN 333 Query: 470 VITTTAGQTADLIQTLTQQSEHIGQIIDVISEIANQTGLLSLNASIEAARAGEHGRGFGV 529 I + + +I +L ++S+ + I+ I++I+ QT LL+LNA+IEA RAGEHGRGF V Sbjct: 334 AIQESVSNSNQMIGSLLERSKEVTTILSAITDISEQTNLLALNAAIEAVRAGEHGRGFAV 393 Query: 530 VANEVKKLAERTNASIVDIVDLIKQIQASTTNAAQSMEKSIAEIGDGMGKMKNVGISFEH 589 VA+EV+KLAE++ S DI +++ IQ M ++ G+ + F Sbjct: 394 VADEVRKLAEQSQNSANDINVILEGIQHDIQTTVDGMSTVTDKVTSGVEVSYDAIDKFGQ 453 Query: 590 IRSSIREVSMQIQDVSAINEEMSAGTEEITASVSDMLTIAKDSAENAQAVSYASSEQMEL 649 I + ++ Q+++V+AI+EEM+A +++TA+ D+ IA+ +A +++ V+ ++ EQ+ Sbjct: 454 IMQTSIKIRPQVEEVTAISEEMAAAVQQVTATAIDLANIARSNAASSEEVAASTEEQLAS 513 Query: 650 MKKVVDSAKSLNEMMSTLKGEIEKFR 675 M+++ SAKSL +M L +I K+ Sbjct: 514 MEEISASAKSLTDMAEELTEKIAKYN 539 >ref|NP_831774.1| Methyl-accepting chemotaxis protein [Bacillus cereus ATCC 14579] gb|AAP08975.1| Methyl-accepting chemotaxis protein [Bacillus cereus ATCC 14579] Length = 660 Score = 207 bits (527), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 148/508 (29%), Positives = 264/508 (51%), Gaps = 14/508 (2%) Query: 170 LIVPVVDKKQQFSGAIAFSVTPDILNEMSKSIHVAESGYGYVVSGKGDYYAYSDMSRIGK 229 ++V + + + +G +A ++ D L + +K I++ + GY +++ GK A+ + G Sbjct: 164 IVVTIAKQTEDKNGVVALDLSLDNLLKTTKLINIGKKGYAFILDGKQKIIAHPQ-EKSGD 222 Query: 230 NMAD-YAKEPELKKAVTAMLSRESGSETYT-GEDGKTIITYYKTIPGTDWKLMINVPKSE 287 AD +AK+ + G+ TY+ G K ++ + T T WK+ + +E Sbjct: 223 KAADSWAKK---------IYEDNHGAFTYSYGGSEKNMV--FATNVKTGWKIGGTMYATE 271 Query: 288 IFAKVNAAQRXXXXXXXXXXXXXXXXXXYLTRMVVKPLVAISGVMKRVAEGHLSERVEVR 347 + ++T + KPL + K ++EG L++ +E+ Sbjct: 272 VIEAAQPVFYNMLIVMLISLVVGGALIYFVTLSITKPLKRLVVTSKEISEGDLTQTIEIH 331 Query: 348 SGDEIGQMSKSINDTVSSLSGIVGTIDATVLQVAAAAEGLLEYANHSSNTSAEIATVIQE 407 S DEIGQ++K N+ +SL ++G I+ + VAAA+E L +S + +I + E Sbjct: 332 SNDEIGQLAKGFNEMTNSLRTLIGRINDSAGHVAAASEELTASVRQASEATEQITIAMDE 391 Query: 408 VAQGMEEQFKGSEQSARATEEMAVGLQRIAESSVSVSDQAETVSAEVQNGYLEIQSTLEQ 467 ++ G Q E A ++ G+Q +A SS S++ + + ++G + T+ Q Sbjct: 392 ISSGATTQTTSVENGAMLLFDVTEGIQHVANSSSSINTASAHTREKAEDGGKLVGRTVNQ 451 Query: 468 MTVITTTAGQTADLIQTLTQQSEHIGQIIDVISEIANQTGLLSLNASIEAARAGEHGRGF 527 M I + Q+ +IQ L +S+ IG I++VI IA+QT LL+LNA+IEAARAGEHGRGF Sbjct: 452 MQSIAESVSQSDAVIQLLNNKSKQIGDILEVIQNIADQTNLLALNAAIEAARAGEHGRGF 511 Query: 528 GVVANEVKKLAERTNASIVDIVDLIKQIQASTTNAAQSMEKSIAEIGDGMGKMKNVGISF 587 +VA+EV+KLAE+++ S +I LI +IQ +SM E+ G+ +F Sbjct: 512 AIVADEVRKLAEQSSVSSSEISKLICEIQDDMGKTVKSMNHVNEEVQSGLVIANETKQNF 571 Query: 588 EHIRSSIREVSMQIQDVSAINEEMSAGTEEITASVSDMLTIAKDSAENAQAVSYASSEQM 647 I S E++ QI+ + MS G E++ SV + A+++A + Q V+ ++ EQ+ Sbjct: 572 AEILQSTNEIANQIKTMVETANGMSKGANEVSISVGQIAMTAQNNATSTQNVAASAEEQL 631 Query: 648 ELMKKVVDSAKSLNEMMSTLKGEIEKFR 675 M+++ +A +L++M L+G I++F+ Sbjct: 632 ASMEEIGSAAGTLSQMAEELQGLIDRFK 659 >ref|ZP_00098128.1| COG0840: Methyl-accepting chemotaxis protein [Desulfitobacterium hafniense] Length = 571 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 219/361 (60%), Gaps = 1/361 (0%) Query: 316 YLTRMVVKPLVAISGVMKRVAEGHLS-ERVEVRSGDEIGQMSKSINDTVSSLSGIVGTID 374 ++ R++ PL+ + G ++ +A+G+L+ E++ + S DE+G+++ IN +L ++ I Sbjct: 210 FIARLIANPLIQVEGTVREIAQGNLTVEKMAIDSEDEVGRLAAGINAMTENLRLLIENIT 269 Query: 375 ATVLQVAAAAEGLLEYANHSSNTSAEIATVIQEVAQGMEEQFKGSEQSARATEEMAVGLQ 434 T QVAA++E L A S++ + IA I EVA G Q + +A EEM+ G+Q Sbjct: 270 HTAEQVAASSEELTASAEQSASATNSIAATITEVAAGAARQEAAVDNAASIVEEMSAGIQ 329 Query: 435 RIAESSVSVSDQAETVSAEVQNGYLEIQSTLEQMTVITTTAGQTADLIQTLTQQSEHIGQ 494 ++A ++ SVS AE + G + + + QM I T TA ++ L ++S+ IGQ Sbjct: 330 QVAATANSVSRSAELTANAAGQGDKAVNAAVSQMKNIEKTVAGTAQVVTQLGERSKEIGQ 389 Query: 495 IIDVISEIANQTGLLSLNASIEAARAGEHGRGFGVVANEVKKLAERTNASIVDIVDLIKQ 554 I+D IS IA QT LL+LNA+IEAARAGE GRGF VVA EV+KLAE++ + I LI + Sbjct: 390 IVDAISGIAAQTNLLALNAAIEAARAGEQGRGFAVVAEEVRKLAEQSQEAAKQIAGLIAE 449 Query: 555 IQASTTNAAQSMEKSIAEIGDGMGKMKNVGISFEHIRSSIREVSMQIQDVSAINEEMSAG 614 IQ T +A ++M + E+ G + + G +F+ I I +VS Q++++SA ++M++G Sbjct: 450 IQKETLSAVKAMNEGTHEVKIGSEVVNSAGEAFDEIVGLIGDVSTQVREISAAIQQMASG 509 Query: 615 TEEITASVSDMLTIAKDSAENAQAVSYASSEQMELMKKVVDSAKSLNEMMSTLKGEIEKF 674 +++I SV D+ ++K+++ Q VS A+ EQ +++V S++ L +M L+ + KF Sbjct: 510 SQQIVDSVRDIDRVSKEASGQTQTVSAATEEQSASIEEVAASSEELAKMAEELQRAVRKF 569 Query: 675 R 675 R Sbjct: 570 R 570 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.310 0.124 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 780,447,892 Number of extensions: 28387593 Number of successful extensions: 103172 Number of sequences better than 1.0e-05: 2050 Number of HSP's gapped: 96164 Number of HSP's successfully gapped: 2136 Length of query: 675 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 543 Effective length of database: 398,844,510 Effective search space: 216572568930 Effective search space used: 216572568930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 129 (54.3 bits)