BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0147.0014.p
         (71 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00183896.1| hypothetical protein Exigu066301 [Exiguobacte...    59   3e-08
ref|NP_693654.1| hypothetical protein OB2732 [Oceanobacillus ihe...    59   5e-08
ref|NP_370898.1| conserved hypothetical protein [Staphylococcus ...    57   1e-07
ref|NP_645166.1| conserved hypothetical protein [Staphylococcus ...    57   1e-07

>ref|ZP_00183896.1| hypothetical protein Exigu066301 [Exiguobacterium sp. 255-15]
          Length = 83

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 44/65 (67%)

Query: 1  LAGLIMGRDIPGGVIGNIIAXXXXXXXXXXXXXXXXPKISDFYVFPSLIGAIVLIFIVSL 60
          +A LI+G+D+PGG+IGNI+A                P I+ F + P+++GAI+LIFIVSL
Sbjct: 16 VASLIIGKDVPGGIIGNIVAGFVGAMIGQAIFGSMGPDIAGFAIIPAILGAIILIFIVSL 75

Query: 61 ILRSV 65
          ILRSV
Sbjct: 76 ILRSV 80


>ref|NP_693654.1| hypothetical protein OB2732 [Oceanobacillus iheyensis HTE831]
 dbj|BAC14688.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 83

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 44/65 (67%)

Query: 1  LAGLIMGRDIPGGVIGNIIAXXXXXXXXXXXXXXXXPKISDFYVFPSLIGAIVLIFIVSL 60
          +A LI+G+D+PGG+IGNI+A                P+I  F++ P+LIGAI+LIFIVS 
Sbjct: 17 IASLIVGKDLPGGIIGNILAGFVGAWLGSLILGSWGPEIGGFFIVPALIGAIILIFIVSF 76

Query: 61 ILRSV 65
          I+R++
Sbjct: 77 IMRAI 81


>ref|NP_370898.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus Mu50]
 ref|NP_373608.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus N315]
 pir||G89803 conserved hypothetical protein SA0360 [imported] - Staphylococcus
          aureus (strain N315)
 dbj|BAB41586.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus N315]
 dbj|BAB56536.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus Mu50]
          Length = 83

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 42/64 (65%)

Query: 2  AGLIMGRDIPGGVIGNIIAXXXXXXXXXXXXXXXXPKISDFYVFPSLIGAIVLIFIVSLI 61
          AG IMG+DIPGG++GNIIA                P++   Y+ P+LIG+I+LI IV+LI
Sbjct: 18 AGAIMGKDIPGGILGNIIAGIIGSWVGGKLFGQWGPELGSIYILPALIGSIILIAIVTLI 77

Query: 62 LRSV 65
          LR++
Sbjct: 78 LRAM 81


>ref|NP_645166.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus MW2]
 dbj|BAB94214.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus MW2]
          Length = 83

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 42/64 (65%)

Query: 2  AGLIMGRDIPGGVIGNIIAXXXXXXXXXXXXXXXXPKISDFYVFPSLIGAIVLIFIVSLI 61
          AG IMG+DIPGG++GNIIA                P++   Y+ P+LIG+I+LI IV+LI
Sbjct: 18 AGAIMGKDIPGGILGNIIAGIIGSWVGGKLFGQWGPELGSIYILPALIGSIILIAIVTLI 77

Query: 62 LRSV 65
          LR++
Sbjct: 78 LRAM 81


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.330    0.153    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 74,930,920
Number of extensions: 1695137
Number of successful extensions: 5547
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5552
Number of HSP's successfully gapped: 9
Length of query: 71
Length of database: 757,237,578
Length adjustment: 42
Effective length of query: 29
Effective length of database: 643,203,420
Effective search space: 18652899180
Effective search space used: 18652899180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 120 (50.8 bits)