BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0147.0009.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00023859.1| COG4208: ABC-type sulfate transport system, p... 344 1e-93 ref|NP_889984.1| sulfate transport system permease protein [Bord... 342 3e-93 ref|NP_883934.1| sulfate transport system permease protein [Bord... 342 7e-93 ref|NP_952401.1| sulfate ABC transporter, permease protein [Geob... 338 1e-91 ref|NP_248972.1| sulfate transport protein CysW [Pseudomonas aer... 335 5e-91 >ref|ZP_00023859.1| COG4208: ABC-type sulfate transport system, permease component [Ralstonia metallidurans] Length = 305 Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 168/221 (76%), Positives = 190/221 (85%), Gaps = 4/221 (1%) Query: 7 GLVLFWLIALPLIVVLTEALKRGWDVFLAALTDPDAASALRLTLLVAAITVPLNTVFGVM 66 GL LF +PL V EAL++G D +LAALT+PDA SA++LTL VAAI VPLN VFGV Sbjct: 50 GLFLF----IPLASVFYEALRKGVDTYLAALTEPDAVSAIKLTLTVAAIAVPLNVVFGVA 105 Query: 67 AAWAVTKFRFRGKGFLITLIDLPFAVSPVIGGLIFVLVFGSNGWFGSWLSAHDIKIVFAL 126 AAWA+ KF FRGK LITLIDLPF+VSPVI GLI+VL+FG+ GWFG WL AHDIKI+FA+ Sbjct: 106 AAWAIAKFDFRGKNLLITLIDLPFSVSPVISGLIYVLMFGAQGWFGPWLEAHDIKIMFAV 165 Query: 127 PGIMLATLFVTFPFVARELIPLMEDQGTQEEEAAITLGAHGWQIFWRVTLPNIKWGLLYG 186 PGI+LAT+FVTFPFVARELIPLM+ QG++EEEAAI LGA GWQ FW VTLPNI+WGLLYG Sbjct: 166 PGIVLATIFVTFPFVARELIPLMQAQGSEEEEAAIVLGASGWQTFWHVTLPNIRWGLLYG 225 Query: 187 IILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILYNEYQ 227 +ILCNARAMGEFGAVSVVSGHIRG TNT+PLHVEILYNEY Sbjct: 226 VILCNARAMGEFGAVSVVSGHIRGLTNTMPLHVEILYNEYN 266 >ref|NP_889984.1| sulfate transport system permease protein [Bordetella bronchiseptica RB50] emb|CAE33943.1| sulfate transport system permease protein [Bordetella bronchiseptica] Length = 299 Score = 342 bits (878), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 162/212 (76%), Positives = 190/212 (89%) Query: 16 LPLIVVLTEALKRGWDVFLAALTDPDAASALRLTLLVAAITVPLNTVFGVMAAWAVTKFR 75 +PL V TEAL++GW ++LAA+ +PDA SA+RLTLLVAAI +P+N VFGV AAWAVTKF+ Sbjct: 35 VPLAAVFTEALRKGWQLYLAAIVEPDAWSAIRLTLLVAAIALPVNLVFGVAAAWAVTKFQ 94 Query: 76 FRGKGFLITLIDLPFAVSPVIGGLIFVLVFGSNGWFGSWLSAHDIKIVFALPGIMLATLF 135 FRGK LITLIDLPF+VSPV+ G++FVL+FGS GWFGSWL HD KIV+A+PG++LATLF Sbjct: 95 FRGKQLLITLIDLPFSVSPVVAGMVFVLLFGSQGWFGSWLQDHDWKIVYAVPGVILATLF 154 Query: 136 VTFPFVARELIPLMEDQGTQEEEAAITLGAHGWQIFWRVTLPNIKWGLLYGIILCNARAM 195 VTFPF+ARELIPLM+ QG++EE+AA+TLGA GWQIFWRVTLPNIKWGLLYG ILCNARAM Sbjct: 155 VTFPFIARELIPLMQAQGSEEEQAALTLGASGWQIFWRVTLPNIKWGLLYGAILCNARAM 214 Query: 196 GEFGAVSVVSGHIRGETNTLPLHVEILYNEYQ 227 GEFGAVSVVSG +RG TNT+ LHVEILYNEYQ Sbjct: 215 GEFGAVSVVSGQVRGLTNTMTLHVEILYNEYQ 246 >ref|NP_883934.1| sulfate transport system permease protein [Bordetella parapertussis 12822] emb|CAE36958.1| sulfate transport system permease protein [Bordetella parapertussis] Length = 299 Score = 342 bits (876), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 161/212 (75%), Positives = 190/212 (89%) Query: 16 LPLIVVLTEALKRGWDVFLAALTDPDAASALRLTLLVAAITVPLNTVFGVMAAWAVTKFR 75 +PL V TEAL++GW ++LAA+ +PDA SA+RLTLLVAAI +P+N VFGV AAWAVTKF+ Sbjct: 35 VPLAAVFTEALRKGWQLYLAAIVEPDAWSAIRLTLLVAAIALPVNLVFGVAAAWAVTKFQ 94 Query: 76 FRGKGFLITLIDLPFAVSPVIGGLIFVLVFGSNGWFGSWLSAHDIKIVFALPGIMLATLF 135 FRGK LITLIDLPF+VSPV+ G++FVL+FGS GWFGSWL HD KIV+A+PG++LATLF Sbjct: 95 FRGKQLLITLIDLPFSVSPVVAGMVFVLLFGSQGWFGSWLQDHDWKIVYAVPGVILATLF 154 Query: 136 VTFPFVARELIPLMEDQGTQEEEAAITLGAHGWQIFWRVTLPNIKWGLLYGIILCNARAM 195 VTFPF+ARELIPLM+ QG++EE+AA+TLGA GWQIFWRVTLPNIKWGLLYG ILCNARAM Sbjct: 155 VTFPFIARELIPLMQAQGSEEEQAALTLGASGWQIFWRVTLPNIKWGLLYGAILCNARAM 214 Query: 196 GEFGAVSVVSGHIRGETNTLPLHVEILYNEYQ 227 GEFGAVS+VSG +RG TNT+ LHVEILYNEYQ Sbjct: 215 GEFGAVSLVSGQVRGLTNTMTLHVEILYNEYQ 246 >ref|NP_952401.1| sulfate ABC transporter, permease protein [Geobacter sulfurreducens PCA] gb|AAR34724.1| sulfate ABC transporter, permease protein [Geobacter sulfurreducens PCA] Length = 276 Score = 338 bits (866), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 161/212 (75%), Positives = 187/212 (88%) Query: 16 LPLIVVLTEALKRGWDVFLAALTDPDAASALRLTLLVAAITVPLNTVFGVMAAWAVTKFR 75 +PL V +AL++GW +LAA+ +PDA +A++LTL+ AAI+VPLN VFGV+AAWA+ KF+ Sbjct: 32 VPLAAVFAQALEKGWGAYLAAIREPDALAAVKLTLVTAAISVPLNLVFGVVAAWAIAKFQ 91 Query: 76 FRGKGFLITLIDLPFAVSPVIGGLIFVLVFGSNGWFGSWLSAHDIKIVFALPGIMLATLF 135 FRGK LITLIDLPF+VSPVI GLI+VL+FG GW G WL HD KI+FA+PGI+LAT+F Sbjct: 92 FRGKQLLITLIDLPFSVSPVISGLIYVLLFGLQGWLGPWLQDHDAKIIFAVPGIVLATVF 151 Query: 136 VTFPFVARELIPLMEDQGTQEEEAAITLGAHGWQIFWRVTLPNIKWGLLYGIILCNARAM 195 VTFPFVARELIPLME QGT EEEAAITLGA+G+Q FWRVTLPNIKWGLLYG+ILCNARAM Sbjct: 152 VTFPFVARELIPLMEAQGTDEEEAAITLGANGFQTFWRVTLPNIKWGLLYGVILCNARAM 211 Query: 196 GEFGAVSVVSGHIRGETNTLPLHVEILYNEYQ 227 GEFGAVSVVSGHIRGETNT+PLHVEILYNEY Sbjct: 212 GEFGAVSVVSGHIRGETNTIPLHVEILYNEYN 243 >ref|NP_248972.1| sulfate transport protein CysW [Pseudomonas aeruginosa PA01] pir||A83610 sulfate transport protein CysW PA0281 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG03670.1| sulfate transport protein CysW [Pseudomonas aeruginosa PAO1] Length = 289 Score = 335 bits (859), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 163/226 (72%), Positives = 192/226 (84%) Query: 2 LVAAAGLVLFWLIALPLIVVLTEALKRGWDVFLAALTDPDAASALRLTLLVAAITVPLNT 61 L+ A LV + LPL VVL+EALK+G+ F A+ +PDA +AL+LTL+ AI+VPLN Sbjct: 25 LIVLAWLVFALFLLLPLYVVLSEALKQGFGTFFEAILEPDALAALKLTLIAVAISVPLNL 84 Query: 62 VFGVMAAWAVTKFRFRGKGFLITLIDLPFAVSPVIGGLIFVLVFGSNGWFGSWLSAHDIK 121 +FGV AAW V+KF FRGK L+TLIDLPF+VSPVI GLI+VL+FG+ G+FG WLS HDI+ Sbjct: 85 LFGVAAAWCVSKFEFRGKSILVTLIDLPFSVSPVIAGLIYVLLFGAQGYFGEWLSDHDIQ 144 Query: 122 IVFALPGIMLATLFVTFPFVARELIPLMEDQGTQEEEAAITLGAHGWQIFWRVTLPNIKW 181 IVFA+PGI+LATLFVT PFVARELIPLM++QGTQEEEAA LGA+GWQ+FW VTLPNIKW Sbjct: 145 IVFAVPGIVLATLFVTVPFVARELIPLMQEQGTQEEEAARLLGANGWQMFWHVTLPNIKW 204 Query: 182 GLLYGIILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILYNEYQ 227 GL+YG++LC ARAMGEFGAVSVVSGHIRG TNTLPLHVEILYNEY Sbjct: 205 GLIYGVVLCTARAMGEFGAVSVVSGHIRGVTNTLPLHVEILYNEYN 250 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.142 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 348,237,020 Number of extensions: 13625300 Number of successful extensions: 52096 Number of sequences better than 1.0e-05: 996 Number of HSP's gapped: 52343 Number of HSP's successfully gapped: 1008 Length of query: 258 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 135 Effective length of database: 423,280,401 Effective search space: 57142854135 Effective search space used: 57142854135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 124 (52.4 bits)