BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0147.0003.p
         (96 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_693861.1| hypothetical protein OB2939 [Oceanobacillus ihe...    69   3e-11

>ref|NP_693861.1| hypothetical protein OB2939 [Oceanobacillus iheyensis HTE831]
 dbj|BAC14895.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 105

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 56/95 (58%)

Query: 1   LFKWGTFVYEAFLALPFIGGAFVVANAWAPXXXXXXXXXXXXXXXXRERGPIAGNVVGII 60
           + +W T   EA L +PFIGG ++ +NA+ P                R+   IAG+V+GII
Sbjct: 6   IMQWVTGGAEALLGIPFIGGIYIFSNAYTPLFVMLLLHILTLILAKRDGRWIAGSVIGII 65

Query: 61  TSVVALIPFVGWIMHAVTAIILLIEGISASRRTPR 95
           TSV+A IP VG IMH ++A+ L+I G+ ++++   
Sbjct: 66  TSVIAWIPIVGMIMHWISALALIISGMQSNKKDDE 100


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.330    0.145    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 110,188,132
Number of extensions: 2646783
Number of successful extensions: 9998
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9995
Number of HSP's successfully gapped: 3
Length of query: 96
Length of database: 757,237,578
Length adjustment: 64
Effective length of query: 32
Effective length of database: 583,471,242
Effective search space: 18671079744
Effective search space used: 18671079744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 120 (50.8 bits)