BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0147.0001.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAI17796.1| unknown [environmental sequence] 196 2e-49 ref|ZP_00031986.1| COG2910: Putative NADH-flavin reductase [Burk... 179 3e-44 ref|NP_249432.1| conserved hypothetical protein [Pseudomonas aer... 172 3e-42 gb|EAK54335.1| unknown [environmental sequence] 169 4e-41 ref|NP_900384.1| conserved hypothetical protein [Chromobacterium... 169 5e-41 >gb|EAI17796.1| unknown [environmental sequence] Length = 228 Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/211 (45%), Positives = 143/211 (67%), Gaps = 1/211 (0%) Query: 1 MDVVVFGATGTIGRAIVQEALKRKHEVTAAVRNPASLELEHERLHVTTADILDPATVAEA 60 + + +FGATG IG I EA +R H+VTA RNPA + + + AD+LD A+V+ A Sbjct: 18 LKIALFGATGMIGSRIAAEAARRGHQVTALARNPARVPADLANVTAAQADVLDAASVSAA 77 Query: 61 VRGHEEVISAFGPAAGRENDLLRAAESLLEGMQAAGLERLLVIGGAGTLKTESGEQLMDT 120 VRGH+ V SA+ P + RA+ +L++G++AAGL+RL+V+GGAG+L+ G+QL+DT Sbjct: 78 VRGHDVVASAYAPPKDDPAVVSRASHALVDGVRAAGLKRLVVVGGAGSLEVAPGKQLVDT 137 Query: 121 PGFPEKFRPLAEAHGHAYEIYSA-SSLDYTYLSPPAVIRPGRRTGQFRIGLDRLVVDENG 179 GFP+ ++ +A AH A++ Y + LD+T+ +P A+I PG RTG+FR G + L+ D G Sbjct: 138 DGFPDAYKAVALAHRDAFDYYRGITDLDWTFFAPAALIAPGERTGKFRTGANTLIADAEG 197 Query: 180 DSSISVEDFAVAVIDELEEGNFSRTRFTVGY 210 +S IS ED+A+A +DELE+G F R TV Y Sbjct: 198 NSRISAEDYAIAFVDELEQGRFIRQIATVAY 228 >ref|ZP_00031986.1| COG2910: Putative NADH-flavin reductase [Burkholderia fungorum] Length = 253 Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/211 (45%), Positives = 138/211 (65%), Gaps = 1/211 (0%) Query: 1 MDVVVFGATGTIGRAIVQEALKRKHEVTAAVRNPASLELEHERLHVTTADILDPATVAEA 60 + + +FGATG IG + EA +R H+VTA RNPA + L AD+LD A+V A Sbjct: 43 LKIALFGATGMIGSRVAAEAARRGHQVTALARNPARVPAGVANLKAAQADLLDAASVGAA 102 Query: 61 VRGHEEVISAFGPAAGRENDLLRAAESLLEGMQAAGLERLLVIGGAGTLKTESGEQLMDT 120 VRGH+ V SA+ P L +A +L+EG++AAGL+RL+V+GGAG+L+ G+QL+D Sbjct: 103 VRGHDVVASAYAPPQDDLAALGKATRALVEGVRAAGLKRLVVVGGAGSLEVAPGKQLVDA 162 Query: 121 PGFPEKFRPLAEAHGHAYEIY-SASSLDYTYLSPPAVIRPGRRTGQFRIGLDRLVVDENG 179 GFP+ ++ +A AH A+ Y + LD+T+ +P A+I PG RTG+FR G + L+ D G Sbjct: 163 EGFPDAYKAIALAHRDAFAYYRGVTDLDWTFFAPAALIAPGERTGKFRTGANTLLTDAEG 222 Query: 180 DSSISVEDFAVAVIDELEEGNFSRTRFTVGY 210 +S IS EDFA+A +DELE+G+F R T Y Sbjct: 223 NSRISAEDFAIAFVDELEQGHFVRQIATAAY 253 >ref|NP_249432.1| conserved hypothetical protein [Pseudomonas aeruginosa PA01] pir||H83552 conserved hypothetical protein PA0741 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG04130.1| conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Length = 213 Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 141/216 (65%), Gaps = 9/216 (4%) Query: 1 MDVVVFGATGTIGRAIVQEALKRKHEVTAAVRNPASLELEHERLHVTTADILDPATVAEA 60 M + + GATG +G + EAL+R H VTA VR+P+ L + L V AD+ DPA VA A Sbjct: 1 MKIALIGATGHVGHYFLNEALQRGHAVTALVRDPSKLA-ARDGLCVVQADVSDPAQVASA 59 Query: 61 VRGHEEVISAFGPAAGRENDLLRA-----AESLLEGMQAAGLERLLVIGGAGTLKTESGE 115 V GHE VISAF G + LRA ++++L+G++ +G+ RLLV+GGAG+L+ G+ Sbjct: 60 VAGHEVVISAFNGGWGSAD--LRARHAAGSQAILDGVKRSGVPRLLVLGGAGSLEIAPGQ 117 Query: 116 QLMDTPGFPEKFRPLAEAHGHAY-EIYSASSLDYTYLSPPAVIRPGRRTGQFRIGLDRLV 174 +L+D+P FPE+++ A A ++ LD+ +LSP ++ PG+R+G+FR+G D+++ Sbjct: 118 RLVDSPEFPEQWKQGALGAADALDQLRGEQRLDWVFLSPAMLLEPGQRSGKFRLGGDQVL 177 Query: 175 VDENGDSSISVEDFAVAVIDELEEGNFSRTRFTVGY 210 D G+S IS+ED AVA++DE E+ R RFTV Y Sbjct: 178 FDAKGESRISLEDLAVAMLDEAEQPRHHRQRFTVAY 213 >gb|EAK54335.1| unknown [environmental sequence] Length = 213 Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 7/215 (3%) Query: 1 MDVVVFGATGTIGRAIVQEALKRKHEVTAAVRNPASLELEHERLHVTTADILDPATVAEA 60 M + + GATG +G ++QEAL R H+VTA VR P L H +L V AD+ D A + + Sbjct: 1 MRIALIGATGYVGAPLLQEALSRGHQVTALVRQPKKLN-AHPQLTVVEADVHDSAALTQQ 59 Query: 61 VRGHEEVISAFGPAAG----RENDLLRAAESLLEGMQAAGLERLLVIGGAGTLKTESGEQ 116 + GH+ VISAF P G RE + + S++ + AG++RLLV+GGAG+L Q Sbjct: 60 LHGHDAVISAFNPGWGVAEIREQ-FIAGSRSIIAASKQAGVKRLLVVGGAGSLYVAPNVQ 118 Query: 117 LMDTPGFPEKFRPLAEAHGHAYEIYSA-SSLDYTYLSPPAVIRPGRRTGQFRIGLDRLVV 175 L+DTP FP +++ AE EI L++T+LSP A++ PG RTG+FR+G D L++ Sbjct: 119 LIDTPDFPAEYKEGAEGARQTLEILRGEQDLEWTFLSPAALLVPGPRTGKFRLGRDELLM 178 Query: 176 DENGDSSISVEDFAVAVIDELEEGNFSRTRFTVGY 210 + N SISV D AVA++DE+E+ R RFT+ Y Sbjct: 179 NGNEPGSISVADLAVALLDEVEQPQHIRQRFTLAY 213 >ref|NP_900384.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] gb|AAQ58390.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 212 Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 95/213 (44%), Positives = 139/213 (65%), Gaps = 4/213 (1%) Query: 1 MDVVVFGATGTIGRAIVQEALKRKHEVTAAVRNPASLELEHERLHVTTADILDPATVAEA 60 M + + GA+G +G A+++EAL R H VTA V P + + D+ D A +AE Sbjct: 1 MKIALIGASGYVGSALLKEALSRGHHVTALVSRPERIAAQANL-AAAKVDVQDSAQLAEQ 59 Query: 61 VRGHEEVISAF-GPAAGREND-LLRAAESLLEGMQAAGLERLLVIGGAGTLKTESGEQLM 118 ++G + V+SAF G A + D ++ S++ +AA RLLV+GGAG+L+ G QL+ Sbjct: 60 LKGFDAVLSAFSGHAQAEQFDYFVKGIRSIIAAAKAAQAPRLLVVGGAGSLEVAPGVQLV 119 Query: 119 DTPGFPEKFRPLAEAHGHAYEIYSASS-LDYTYLSPPAVIRPGRRTGQFRIGLDRLVVDE 177 DTP FPE+++ A A + A + L++T LSP A+++PG+RTGQFR+G D+L+VD Sbjct: 120 DTPEFPEQWKASALGAREALNLLRAETELNWTLLSPSAMLQPGQRTGQFRLGKDQLLVDA 179 Query: 178 NGDSSISVEDFAVAVIDELEEGNFSRTRFTVGY 210 G+S ISVED+AVA+IDELE+G R+RFTVGY Sbjct: 180 EGNSHISVEDYAVAMIDELEKGEHQRSRFTVGY 212 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 298,736,685 Number of extensions: 11763804 Number of successful extensions: 37556 Number of sequences better than 1.0e-05: 88 Number of HSP's gapped: 37597 Number of HSP's successfully gapped: 88 Length of query: 210 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 90 Effective length of database: 431,425,698 Effective search space: 38828312820 Effective search space used: 38828312820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)