BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0016.p (138 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_622911.1| conserved hypothetical protein [Thermoanaerobac... 119 2e-26 ref|ZP_00102048.1| COG1302: Uncharacterized protein conserved in... 108 4e-23 ref|NP_348704.1| Uncharacterized protein from alkaline shock pro... 102 4e-21 ref|NP_243652.1| BH2786~unknown conserved protein [Bacillus halo... 100 9e-21 ref|NP_782191.1| putative alkaline shock protein [Clostridium te... 97 8e-20 >ref|NP_622911.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis] gb|AAM24515.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis] Length = 136 Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 58/120 (48%), Positives = 80/120 (66%) Query: 8 YERTEIGEIQIAPEVIEVIAGLATVEVKXXXXXXXXXXXXIVELLGRKNLSKGVKVEVGQ 67 +E E+G ++I+ EV+ +IAGLA EV I E+LGRKNLSKGVKVEVG Sbjct: 8 FENQELGSVKISEEVVSIIAGLAATEVPGVAGMSGGVVNGISEILGRKNLSKGVKVEVGD 67 Query: 68 REAAVDVSVIIEYGNRLPEVAAEIQRNVKRSIETMTGLTVVEVNVHIHDVQFRSNNTAEK 127 +EA +D+ +I++YG R+PEVA +Q NVK ++E MTGL VVEVN+H+ V N ++ Sbjct: 68 KEATIDLYLIVDYGVRIPEVAWNVQENVKNAVENMTGLKVVEVNIHVQGVSMEKGNKKQQ 127 >ref|ZP_00102048.1| COG1302: Uncharacterized protein conserved in bacteria [Desulfitobacterium hafniense] Length = 132 Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/109 (52%), Positives = 79/109 (72%), Gaps = 1/109 (0%) Query: 13 IGEIQIAPEVIEVIAGLATVEVKXXXXXXXXXXXXIVELLGR-KNLSKGVKVEVGQREAA 71 +G I+IA EV+E+IAGLA +V+ I ++LGR KNLSKGVKVEVG++EAA Sbjct: 10 LGTIKIADEVVEIIAGLAASQVEGVAGMSGGLVGDIAQMLGRGKNLSKGVKVEVGEQEAA 69 Query: 72 VDVSVIIEYGNRLPEVAAEIQRNVKRSIETMTGLTVVEVNVHIHDVQFR 120 V++ +++EYG +PEV+ ++Q VK +IE+MTGL VVE NVH+ V FR Sbjct: 70 VNLYLVVEYGVSIPEVSLKVQEAVKEAIESMTGLLVVETNVHVQGVNFR 118 >ref|NP_348704.1| Uncharacterized protein from alkaline shock protein family, YQHY B.subtilis ortholog [Clostridium acetobutylicum] pir||A97157 uncharacterized protein from alkaline shock protein family, YQHY B. subtilis ortholog [imported] - Clostridium acetobutylicum gb|AAK80044.1| Uncharacterized protein from alkaline shock protein family, YQHY B.subtilis ortholog [Clostridium acetobutylicum] Length = 131 Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 55/128 (42%), Positives = 86/128 (67%), Gaps = 3/128 (2%) Query: 4 LPTEYERTEIGEIQIAPEVIEVIAGLATVEVKXXXXXXXXXXXXIVELL-GRKNLSKGVK 62 + E + ++G ++I+ EV+ VIAGLA E+K I ++L G+KNL+KGVK Sbjct: 1 MAEELKNIDMGIVKISDEVVCVIAGLAASEIKGVVGMSSGIVGGITKILSGKKNLTKGVK 60 Query: 63 VEVGQREAAVDVSVIIEYGNRLPEVAAEIQRNVKRSIETMTGLTVVEVNVHIHDVQFRSN 122 V VG+ A++D+ V+IEYG R+P+VA ++Q NVK ++E++TGL V VNV + +V F + Sbjct: 61 VNVGEESASIDLYVVIEYGLRIPDVAVKVQENVKTTVESLTGLNVSAVNVFVQNVAF--S 118 Query: 123 NTAEKTEE 130 N ++TEE Sbjct: 119 NKQQETEE 126 >ref|NP_243652.1| BH2786~unknown conserved protein [Bacillus halodurans] pir||B83998 hypothetical protein BH2786 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06505.1| BH2786~unknown conserved protein [Bacillus halodurans] Length = 132 Score = 100 bits (250), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 55/126 (43%), Positives = 82/126 (65%) Query: 4 LPTEYERTEIGEIQIAPEVIEVIAGLATVEVKXXXXXXXXXXXXIVELLGRKNLSKGVKV 63 L E ++T++G ++I+PEVIEVIAG+A EV+ + E LG KN KGVKV Sbjct: 7 LDLEEQKTDLGRVEISPEVIEVIAGIAASEVEGVATMRGNFAAGVAEKLGYKNHGKGVKV 66 Query: 64 EVGQREAAVDVSVIIEYGNRLPEVAAEIQRNVKRSIETMTGLTVVEVNVHIHDVQFRSNN 123 ++ VDVSVII YG +PEVA +IQ+N+K++++TMT + + +NVHI V F + + Sbjct: 67 DLNDEGIIVDVSVIILYGVSVPEVAKKIQQNIKQALQTMTAIELQSINVHIVGVHFEAVD 126 Query: 124 TAEKTE 129 E+T+ Sbjct: 127 GEEETK 132 >ref|NP_782191.1| putative alkaline shock protein [Clostridium tetani E88] gb|AAO36128.1| putative alkaline shock protein [Clostridium tetani E88] Length = 131 Score = 97.4 bits (241), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 48/107 (44%), Positives = 76/107 (71%), Gaps = 1/107 (0%) Query: 12 EIGEIQIAPEVIEVIAGLATVEVKXXXXXXXXXXXXIVELL-GRKNLSKGVKVEVGQREA 70 ++G ++I+ EV+ VIAGLAT E++ I ++L G+KNLSKGVKV VG+ A Sbjct: 10 DMGIVKISDEVVGVIAGLATTEIEGIAGMSAGPVEGITQILTGKKNLSKGVKVTVGENSA 69 Query: 71 AVDVSVIIEYGNRLPEVAAEIQRNVKRSIETMTGLTVVEVNVHIHDV 117 +D+ +++EYG +PEVA +Q NVK+++E+MTGL V ++N+H+ +V Sbjct: 70 TIDLYLVVEYGINIPEVALGVQENVKKAVESMTGLNVSDINIHVQNV 116 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.312 0.130 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 148,653,091 Number of extensions: 4283468 Number of successful extensions: 9369 Number of sequences better than 1.0e-05: 74 Number of HSP's gapped: 9349 Number of HSP's successfully gapped: 74 Length of query: 138 Length of database: 757,237,578 Length adjustment: 99 Effective length of query: 39 Effective length of database: 488,442,777 Effective search space: 19049268303 Effective search space used: 19049268303 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 120 (50.8 bits)