BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0015.p (181 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243653.1| acetyl-CoA carboxylase biotin carboxylase subun... 278 3e-74 ref|NP_658220.1| CPSase_L_D2, Carbamoyl-phosphate synthase L cha... 271 5e-72 ref|NP_833897.1| Biotin carboxylase [Bacillus cereus ATCC 14579]... 268 3e-71 ref|NP_390314.1| acetyl-CoA carboxylase subunit (biotin carboxyl... 268 5e-71 ref|NP_470730.1| acetyl-CoA carboxylase subunit (biotin carboxyl... 262 3e-69 >ref|NP_243653.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus halodurans] pir||C83998 acetyl-CoA carboxylase biotin carboxylase subunit accC [imported] - Bacillus halodurans (strain C-125) dbj|BAB06506.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus halodurans] Length = 452 Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 133/181 (73%), Positives = 148/181 (81%), Gaps = 1/181 (0%) Query: 2 NYSGAGTLEFLLG-PDGQFYFMEMNTRIQVEHPVTEMVTGVDLIKEMISVAEGNPLSFTQ 60 NYSGAGT+EF+ +G FYFMEMNTRIQVEHPVTEMVTG+DLIKE I VA G PLS+ Q Sbjct: 267 NYSGAGTVEFIYDHNNGDFYFMEMNTRIQVEHPVTEMVTGIDLIKEQIKVASGKPLSYKQ 326 Query: 61 EDIKINGWSMECRINAEDPERNFMPSPGKIGFYLPPGGLGVRVDSAAYPGYTISPFYDSM 120 ED+ NGWS+ECRINAE PE+NFMPSPGK+ YL PGGLGVRVDSAAYPGYTI PFYDSM Sbjct: 327 EDVTFNGWSIECRINAESPEKNFMPSPGKLKSYLAPGGLGVRVDSAAYPGYTIPPFYDSM 386 Query: 121 IAKLIVWAPTRREAIAKMKRALSEFAVEGIHTTISFHQKLLEHPVFLDGNFDIKFLEEYE 180 IAK+I TR EAIAKMKRAL+EF VEGI TTI FH +LL H F+ G+F+ KFLE Y Sbjct: 387 IAKVITHGATRDEAIAKMKRALAEFEVEGIETTIPFHLRLLNHETFVSGDFNTKFLEIYN 446 Query: 181 I 181 I Sbjct: 447 I 447 >ref|NP_658220.1| CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP binding domain [Bacillus anthracis A2012] ref|NP_846636.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus anthracis str. Ames] ref|NP_980550.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus cereus ATCC 10987] gb|AAP28122.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus anthracis str. Ames] gb|AAS43158.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus cereus ATCC 10987] Length = 450 Score = 271 bits (693), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 126/181 (69%), Positives = 148/181 (81%), Gaps = 1/181 (0%) Query: 2 NYSGAGTLEFLLG-PDGQFYFMEMNTRIQVEHPVTEMVTGVDLIKEMISVAEGNPLSFTQ 60 +Y+GAGT+EF+ FYFMEMNTRIQVEHPVTEMVTGVDLIKE I VA G LS Q Sbjct: 267 DYTGAGTVEFIYEYKTKSFYFMEMNTRIQVEHPVTEMVTGVDLIKEQILVASGEKLSLQQ 326 Query: 61 EDIKINGWSMECRINAEDPERNFMPSPGKIGFYLPPGGLGVRVDSAAYPGYTISPFYDSM 120 E+++ NGW++ECRINAE+P + FMPSPGK+ YLPPGG G+RVDSA YPGY+I PFYDSM Sbjct: 327 EEVQFNGWAIECRINAENPAKKFMPSPGKVEMYLPPGGFGIRVDSAVYPGYSIPPFYDSM 386 Query: 121 IAKLIVWAPTRREAIAKMKRALSEFAVEGIHTTISFHQKLLEHPVFLDGNFDIKFLEEYE 180 +AKLIV TR EAIAKMKRALSEF VEG+HTTI FH +LL+HP F+ G F+ KFLEE+E Sbjct: 387 VAKLIVHGKTREEAIAKMKRALSEFVVEGVHTTIPFHLQLLDHPDFVKGEFNTKFLEEHE 446 Query: 181 I 181 + Sbjct: 447 L 447 >ref|NP_833897.1| Biotin carboxylase [Bacillus cereus ATCC 14579] gb|AAP11098.1| Biotin carboxylase [Bacillus cereus ATCC 14579] Length = 440 Score = 268 bits (686), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 124/181 (68%), Positives = 148/181 (81%), Gaps = 1/181 (0%) Query: 2 NYSGAGTLEFLLG-PDGQFYFMEMNTRIQVEHPVTEMVTGVDLIKEMISVAEGNPLSFTQ 60 +Y+GAGT+EF+ FYFMEMNTRIQVEHPVTEMVTG+DLIKE I VA G LS Q Sbjct: 257 DYTGAGTVEFIYEYKTKTFYFMEMNTRIQVEHPVTEMVTGMDLIKEQILVASGEKLSLQQ 316 Query: 61 EDIKINGWSMECRINAEDPERNFMPSPGKIGFYLPPGGLGVRVDSAAYPGYTISPFYDSM 120 E+++ NGW++ECRINAE+P + FMPSPGK+ YLPPGG G+RVDSA YPGY+I PFYDSM Sbjct: 317 EEVQFNGWAIECRINAENPAKKFMPSPGKVEMYLPPGGFGIRVDSAVYPGYSIPPFYDSM 376 Query: 121 IAKLIVWAPTRREAIAKMKRALSEFAVEGIHTTISFHQKLLEHPVFLDGNFDIKFLEEYE 180 +AKLIV TR EAIAKMKRALSEF +EG+HTTI FH +LL+HP F+ G F+ KFLEE+E Sbjct: 377 VAKLIVHGKTREEAIAKMKRALSEFVIEGVHTTIPFHLQLLDHPDFVKGEFNTKFLEEHE 436 Query: 181 I 181 + Sbjct: 437 L 437 >ref|NP_390314.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Bacillus subtilis] sp|P49787|ACCC_BACSU Biotin carboxylase (A subunit of acetyl-CoA carboxylase) (ACC) pir||A69581 acetyl-CoA carboxylase (biotin carboxylase subunit) accC - Bacillus subtilis dbj|BAA12569.1| YqhX [Bacillus subtilis] emb|CAB14365.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 450 Score = 268 bits (685), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 125/180 (69%), Positives = 147/180 (81%), Gaps = 1/180 (0%) Query: 3 YSGAGTLEFLLGPDGQ-FYFMEMNTRIQVEHPVTEMVTGVDLIKEMISVAEGNPLSFTQE 61 Y+GAGT+EF+ + Q +YFMEMNTRIQVEHPVTEMVTG DLIKE I VA G LS QE Sbjct: 268 YTGAGTVEFIYDYNEQRYYFMEMNTRIQVEHPVTEMVTGTDLIKEQIKVASGMELSLKQE 327 Query: 62 DIKINGWSMECRINAEDPERNFMPSPGKIGFYLPPGGLGVRVDSAAYPGYTISPFYDSMI 121 D++ GW++ECRINAE+P +NFMPSPG+I YLPPGGLGVRVDSAAYPGY+I P+YDSMI Sbjct: 328 DVEFEGWAIECRINAENPSKNFMPSPGEIKMYLPPGGLGVRVDSAAYPGYSIPPYYDSMI 387 Query: 122 AKLIVWAPTRREAIAKMKRALSEFAVEGIHTTISFHQKLLEHPVFLDGNFDIKFLEEYEI 181 AK+I + TR EAIA+MKRALSEF +EGI TTI FH KLLEH F+ G F+ KFLE Y++ Sbjct: 388 AKVITYGKTRDEAIARMKRALSEFVIEGIETTIPFHLKLLEHETFVSGEFNTKFLETYDV 447 >ref|NP_470730.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria innocua] pir||AI1606 acetyl-CoA carboxylase chain (biotin carboxylase chain) [imported] - Listeria innocua (strain Clip11262) emb|CAC96625.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria innocua] Length = 454 Score = 262 bits (669), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 118/181 (65%), Positives = 148/181 (81%), Gaps = 1/181 (0%) Query: 2 NYSGAGTLEFLLGP-DGQFYFMEMNTRIQVEHPVTEMVTGVDLIKEMISVAEGNPLSFTQ 60 NYSGAGT+EF+ + FYFMEMNTRIQVEHPVTE+VTG+DL+K+ VA G L Q Sbjct: 267 NYSGAGTIEFIFDHHENNFYFMEMNTRIQVEHPVTELVTGIDLVKQQFLVASGEELKIKQ 326 Query: 61 EDIKINGWSMECRINAEDPERNFMPSPGKIGFYLPPGGLGVRVDSAAYPGYTISPFYDSM 120 D+K+ GW+MECRINAE+PE+NFMP+PG+I FYLPPGGLGVR+DSAAYP Y I PFYDSM Sbjct: 327 ADVKLTGWAMECRINAENPEKNFMPAPGEIKFYLPPGGLGVRIDSAAYPNYKIPPFYDSM 386 Query: 121 IAKLIVWAPTRREAIAKMKRALSEFAVEGIHTTISFHQKLLEHPVFLDGNFDIKFLEEYE 180 IAK+I +A TR E + KMKRALSEFA++GI +TI FH ++L++ VFL G+F+ KFLE+ + Sbjct: 387 IAKVICYAETREEVVQKMKRALSEFAIDGIPSTIPFHLRVLDNDVFLSGDFNTKFLEQND 446 Query: 181 I 181 + Sbjct: 447 V 447 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 288,584,842 Number of extensions: 11479964 Number of successful extensions: 25171 Number of sequences better than 1.0e-05: 1302 Number of HSP's gapped: 23694 Number of HSP's successfully gapped: 1302 Length of query: 181 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 63 Effective length of database: 436,855,896 Effective search space: 27521921448 Effective search space used: 27521921448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)