BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0006.p (172 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_390322.1| spoIIIAB [Bacillus subtilis] >gi|1710821|sp|Q01... 132 4e-30 ref|NP_658229.1| hypothetical protein predicted by GeneMark [Bac... 130 1e-29 ref|NP_980558.1| stage III sporulation protein AB [Bacillus cere... 130 2e-29 ref|NP_243662.1| mutants block sporulation after engulfment [Bac... 109 3e-23 ref|NP_833906.1| Stage III sporulation protein AB [Bacillus cere... 109 3e-23 >ref|NP_390322.1| spoIIIAB [Bacillus subtilis] sp|Q01368|S3AB_BACSU Stage III sporulation protein AB pir||E69711 stage III sporulation protein spoIIIAB - Bacillus subtilis gb|AAA76721.1| SpoIIIAB dbj|BAA12561.1| SpoIIIAB [Bacillus subtilis] emb|CAB14373.1| spoIIIAB [Bacillus subtilis subsp. subtilis str. 168] Length = 171 Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 74/158 (46%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 1 MLKLFGAVLIVLAGTLAGFKRAAQYADRPRHIRGLIAALQRLETEIQYGYTPLPEALRRI 60 MLKL GAV IV+A T GF+ A Y +RPR IR L AALQ LE EI YG+TPL A ++I Sbjct: 1 MLKLLGAVFIVVATTWTGFEMAKIYTERPRQIRQLRAALQSLEAEIMYGHTPLHTASQQI 60 Query: 61 GMQSKDPLKAFFTTAADEMSPPLDRSAEAAISKAMEEHWKTASLKGTEKEILRQLSCTLG 120 Q P+ F+ +D++ D SA+ A +++++ W T SLK +E E+L+Q TLG Sbjct: 61 AKQLAQPVSTLFSAFSDQLDKGSD-SAKTAWEQSLKKVWDTLSLKKSEYEVLKQFGETLG 119 Query: 121 TSDRSNQSTHIALALQQLKQEETAAREDQGKYEKMNKS 158 DR +Q HI LAL L+ E A + Q K EKM KS Sbjct: 120 IHDRISQQKHIKLALTHLEASEADAEQAQAKNEKMIKS 157 >ref|NP_658229.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_846644.1| stage III sporulation protein AB [Bacillus anthracis str. Ames] gb|AAP28130.1| stage III sporulation protein AB [Bacillus anthracis str. Ames] Length = 171 Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 96/158 (60%), Gaps = 1/158 (0%) Query: 1 MLKLFGAVLIVLAGTLAGFKRAAQYADRPRHIRGLIAALQRLETEIQYGYTPLPEALRRI 60 M+K+FGAVLIV T GF A +Y++RPR +R L AALQ LE EI YG+TPL EA R+ Sbjct: 1 MVKIFGAVLIVAVSTFFGFSYAKRYSERPRQLRLLKAALQSLEAEIMYGHTPLSEAAERL 60 Query: 61 GMQSKDPLKAFFTTAADEMSPPLDRSAEAAISKAMEEHWKTASLKGTEKEILRQLSCTLG 120 Q PL F + A+ + EA I +++E+WK + + TE EIL+Q TLG Sbjct: 61 VKQMPKPLNWIFQSFANRLESGEQTVREAWID-SLKENWKLTAFQQTEYEILQQFGETLG 119 Query: 121 TSDRSNQSTHIALALQQLKQEETAAREDQGKYEKMNKS 158 DR +Q HI L + L++EE A+ Q +YEKM KS Sbjct: 120 QHDRESQQKHIRLCITHLEREEEEAKVLQMQYEKMIKS 157 >ref|NP_980558.1| stage III sporulation protein AB [Bacillus cereus ATCC 10987] gb|AAS43166.1| stage III sporulation protein AB [Bacillus cereus ATCC 10987] Length = 171 Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/158 (46%), Positives = 95/158 (60%), Gaps = 1/158 (0%) Query: 1 MLKLFGAVLIVLAGTLAGFKRAAQYADRPRHIRGLIAALQRLETEIQYGYTPLPEALRRI 60 MLK+FGAVLIV T GF A +Y++RPR +R L AALQ LE EI YG+TPL EA R+ Sbjct: 1 MLKIFGAVLIVAVSTFFGFSYAKRYSERPRQLRLLKAALQSLEAEIMYGHTPLSEAAERL 60 Query: 61 GMQSKDPLKAFFTTAADEMSPPLDRSAEAAISKAMEEHWKTASLKGTEKEILRQLSCTLG 120 Q PL F + A + EA I +++E+WK + + TE EIL+Q TLG Sbjct: 61 VKQMPKPLNWIFQSFASRLESGEQTVREAWID-SLKENWKLTAFQQTEYEILQQFGETLG 119 Query: 121 TSDRSNQSTHIALALQQLKQEETAAREDQGKYEKMNKS 158 DR +Q HI L + L++EE A+ Q +YEKM KS Sbjct: 120 QHDRESQQKHIRLCITHLEREEEEAKALQLQYEKMIKS 157 >ref|NP_243662.1| mutants block sporulation after engulfment [Bacillus halodurans] pir||D83999 mutants block sporulation after engulfment spoIIIAB [imported] - Bacillus halodurans (strain C-125) dbj|BAB06515.1| mutants block sporulation after engulfment [Bacillus halodurans] Length = 170 Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 2 LKLFGAVLIVLAGTLAGFKRAAQYADRPRHIRGLIAALQRLETEIQYGYTPLPEALRRIG 61 +KL GA+ I++A T AGF+ A + +RPR +R L ALQ LE E+ YG TPL EA I Sbjct: 1 MKLLGAIFILMATTWAGFELARRLHERPRQLRQLKVALQSLEAEMVYGLTPLAEATGHIA 60 Query: 62 MQSKDPLKAFFTTAADEMSPPLDRSAEAAISKAMEEHWKTASLKGTEKEILRQLSCTLGT 121 Q P+ F + + + + A A+ E WK +L +E+E++ Q TLG Sbjct: 61 AQMPKPVSYLFEHFSYRLKEK-EETVYDAWEAAINETWKYTALLASEREVILQFGATLGQ 119 Query: 122 SDRSNQSTHIALALQQLKQEETAAREDQGKYEKMNKS 158 DR Q + L L L++EE AR+ Q +YE+M KS Sbjct: 120 HDREQQQKQVRLTLAHLEREEGEARDKQYRYERMMKS 156 >ref|NP_833906.1| Stage III sporulation protein AB [Bacillus cereus ATCC 14579] gb|AAP11107.1| Stage III sporulation protein AB [Bacillus cereus ATCC 14579] Length = 168 Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 61/143 (42%), Positives = 86/143 (60%), Gaps = 1/143 (0%) Query: 16 LAGFKRAAQYADRPRHIRGLIAALQRLETEIQYGYTPLPEALRRIGMQSKDPLKAFFTTA 75 +GF+ A +Y++RPR +R L +ALQ LE EI YG+TPL EA R+ Q PL F + Sbjct: 13 FSGFRYAKRYSERPRQLRLLKSALQSLEAEIMYGHTPLSEAAERLVKQMPKPLNWIFQSF 72 Query: 76 ADEMSPPLDRSAEAAISKAMEEHWKTASLKGTEKEILRQLSCTLGTSDRSNQSTHIALAL 135 A ++ EA I +++E+WK + + TE EIL+Q TLG DR +Q HI L + Sbjct: 73 AKKLESGEQTVREAWID-SLKENWKLTAFQQTEYEILQQFGETLGQHDRESQQKHIRLCI 131 Query: 136 QQLKQEETAAREDQGKYEKMNKS 158 L++EE A+ Q +YEKM KS Sbjct: 132 THLEREEEEAKALQLQYEKMIKS 154 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.129 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 196,214,150 Number of extensions: 6538830 Number of successful extensions: 19788 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 19781 Number of HSP's successfully gapped: 12 Length of query: 172 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 55 Effective length of database: 439,570,995 Effective search space: 24176404725 Effective search space used: 24176404725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 121 (51.2 bits)