BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0137.0004.p
         (82 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_243664.1| BH2798~unknown conserved protein in B. subtilis...    55   6e-07
ref|NP_980560.1| conserved hypothetical protein [Bacillus cereus...    52   5e-06
ref|NP_833908.1| hypothetical protein [Bacillus cereus ATCC 1457...    51   9e-06

>ref|NP_243664.1| BH2798~unknown conserved protein in B. subtilis [Bacillus
          halodurans]
 pir||F83999 hypothetical protein BH2798 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB06517.1| BH2798~unknown conserved protein in B. subtilis [Bacillus
          halodurans]
          Length = 93

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 40/58 (68%)

Query: 24 LNQVDKALAVNSGLALVGPTILILTTAVGLTGMAQDLSWGKLGWIGCGVAFLLIGILK 81
          LN V+KA+A+N+ LA+VGP I + +  +GL  MA  +S  +L +IG GV  +LIGI K
Sbjct: 36 LNSVEKAVAINAMLAIVGPVIFLSSITIGLLSMADRMSPTRLLFIGTGVCLILIGIRK 93


>ref|NP_980560.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS43168.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 114

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 39/58 (67%)

Query: 24  LNQVDKALAVNSGLALVGPTILILTTAVGLTGMAQDLSWGKLGWIGCGVAFLLIGILK 81
           +N   KAL +NS LA VGPT+LILT  +G+  +A ++S+ KL ++  G+  + I +LK
Sbjct: 57  VNDAKKALFINSMLAFVGPTVLILTMTIGIASVASEISFLKLFFLTLGIGCIFIALLK 114


>ref|NP_833908.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP11109.1| hypothetical protein [Bacillus cereus ATCC 14579]
          Length = 93

 Score = 50.8 bits (120), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%)

Query: 25 NQVDKALAVNSGLALVGPTILILTTAVGLTGMAQDLSWGKLGWIGCGVAFLLIGILK 81
          N   KAL +N  LA VGPT+LILT  +G+  +A ++S+ KL ++  G+  + I +LK
Sbjct: 37 NDAKKALFINGMLAFVGPTVLILTMTIGIASVASEISFLKLFFLALGICCIFIALLK 93


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.324    0.143    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 97,220,341
Number of extensions: 3376151
Number of successful extensions: 6767
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6767
Number of HSP's successfully gapped: 5
Length of query: 82
Length of database: 757,237,578
Length adjustment: 52
Effective length of query: 30
Effective length of database: 616,052,430
Effective search space: 18481572900
Effective search space used: 18481572900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)