BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0135.0004.p (256 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_978927.1| ABC transporter, ATP-binding protein [Bacillus ... 333 2e-90 ref|NP_656473.1| ABC_tran, ABC transporter [Bacillus anthracis A... 328 9e-89 ref|NP_832302.1| ABC transporter ATP-binding protein [Bacillus c... 327 1e-88 ref|NP_391350.1| similar to ABC transporter (ATP-binding protein... 321 9e-87 ref|NP_783753.1| ABC transporter ATP-binding protein [Clostridiu... 311 7e-84 >ref|NP_978927.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS41535.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 256 Score = 333 bits (854), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 153/256 (59%), Positives = 203/256 (79%) Query: 1 LPILDVHNLSKIYEGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDEPTS 60 + IL N+SK+Y+GK+ AL I ++++GEF+GIMGPSGSGKTTLLN+++TID PTS Sbjct: 1 MEILHAKNISKVYKGKIPFKALVDIDLSIQEGEFIGIMGPSGSGKTTLLNMVSTIDSPTS 60 Query: 61 GEVMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQEME 120 GE++ING +P L +D ALFRRK+LGFVFQ FNLL TLTV+EN+VLP+TL G +VQEM Sbjct: 61 GEIVINGTNPFQLSSEDLALFRRKQLGFVFQSFNLLSTLTVKENIVLPMTLDGVSVQEMN 120 Query: 121 YRLGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKAAGE 180 R+ E+A++L I +L+KRT EISGGQ QR AIARA++H+P L+L DEPTG+LDSK++ + Sbjct: 121 KRVEEIAEKLNITDILNKRTFEISGGQAQRTAIARAIVHKPQLLLVDEPTGNLDSKSSND 180 Query: 181 VMNLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNIIDM 240 VM +L +N E T+++VTHD AASFC RVIFIKDG+ ++E+YRG SR F+Q I+D+ Sbjct: 181 VMEMLDTLNKEEKATMMLVTHDPYAASFCSRVIFIKDGQLYNEIYRGESRQTFYQKIMDV 240 Query: 241 LSLLGGGGHDLPAVRL 256 LSLLGG HD +VR+ Sbjct: 241 LSLLGGKRHDFSSVRI 256 >ref|NP_656473.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_844966.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP26452.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 256 Score = 328 bits (840), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 152/256 (59%), Positives = 202/256 (78%) Query: 1 LPILDVHNLSKIYEGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDEPTS 60 + IL ++SK+Y+GKV AL I ++++GEFVGIMGPSGSGKTTLLN+++TID P+S Sbjct: 1 MEILHAKSISKVYKGKVPYKALVDIDLSIQEGEFVGIMGPSGSGKTTLLNMVSTIDSPSS 60 Query: 61 GEVMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQEME 120 GE++ING +P L +D ALFRRK+LGFVFQ FNLL TLTV+EN+VLP+TL G +VQEM Sbjct: 61 GEILINGTNPFQLSSEDLALFRRKQLGFVFQSFNLLSTLTVKENIVLPMTLDGVSVQEMN 120 Query: 121 YRLGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKAAGE 180 R+ +A++L I +L KRT EISGGQ QR AIARA++H+P L+LADEPTG+LDSK++ + Sbjct: 121 KRVEAIAEKLNITDILSKRTFEISGGQAQRTAIARAIVHKPQLLLADEPTGNLDSKSSND 180 Query: 181 VMNLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNIIDM 240 VM +L +N E T+++VTHD AASFC RV+FIKDG+ ++E+Y G SR AF+Q I+D+ Sbjct: 181 VMEMLDTLNKEEKATMMLVTHDPYAASFCSRVVFIKDGQLYNEIYCGESRQAFYQKIMDV 240 Query: 241 LSLLGGGGHDLPAVRL 256 LSLLGG HD +VR+ Sbjct: 241 LSLLGGKRHDFSSVRI 256 >ref|NP_832302.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP09503.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] Length = 256 Score = 327 bits (839), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 151/256 (58%), Positives = 203/256 (79%) Query: 1 LPILDVHNLSKIYEGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDEPTS 60 + IL ++SK+Y+GK+ AL I ++++GEFVGIMGPSGSGKTTLLN+++TID P+S Sbjct: 1 MEILHAKSISKVYKGKIPYKALVDIDLSIQEGEFVGIMGPSGSGKTTLLNMVSTIDSPSS 60 Query: 61 GEVMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQEME 120 GE++ING +P L +D ALFRRK+LGFVFQ FNLL TLTV+EN+VLP+TL G +V+EM Sbjct: 61 GEILINGTNPFQLSSEDLALFRRKQLGFVFQSFNLLSTLTVKENIVLPMTLDGVSVREMN 120 Query: 121 YRLGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKAAGE 180 R+ E+A++L I +L KRT EISGGQ QR AIARA++H+P L+LADEPTG+LDSK++ + Sbjct: 121 KRVEEIAEKLNITDILSKRTFEISGGQAQRTAIARAIVHKPQLLLADEPTGNLDSKSSND 180 Query: 181 VMNLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNIIDM 240 VM +L +N E T+++VTHD AASFC RV+FIKDG+ ++E+Y G SR AF+Q I+D+ Sbjct: 181 VMEMLDTLNKEEKATMMLVTHDPYAASFCSRVVFIKDGQLYNEIYCGESRQAFYQKIMDV 240 Query: 241 LSLLGGGGHDLPAVRL 256 LSLLGG HD +VR+ Sbjct: 241 LSLLGGKRHDFSSVRI 256 >ref|NP_391350.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] pir||F70032 ABC transporter (ATP-binding protein) homolog yvcR - Bacillus subtilis emb|CAB08064.1| hypothetical protein [Bacillus subtilis] emb|CAB15475.1| yvcR [Bacillus subtilis subsp. subtilis str. 168] Length = 259 Score = 321 bits (823), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 154/258 (59%), Positives = 199/258 (77%), Gaps = 3/258 (1%) Query: 1 LPILDVHNLSKIY---EGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDE 57 + +L NLSK Y +G +S AL+ +V +GEFVGIMGPSGSGKTTLLN++ATID+ Sbjct: 1 MNVLQTTNLSKTYYSNKGTISYQALSAFDLSVSKGEFVGIMGPSGSGKTTLLNLLATIDK 60 Query: 58 PTSGEVMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQ 117 PT GE+MING P+ L ++ ALFRR+ELGFVFQ FNLLDTLT+ EN++LPL L ++ Sbjct: 61 PTQGEMMINGIQPKTLKDQELALFRRRELGFVFQDFNLLDTLTIRENILLPLALDKVKLR 120 Query: 118 EMEYRLGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKA 177 EME RL E+AD L I+ +LD RT E+SGGQ QR A ARA+IH P+LILADEPTG+LDSK+ Sbjct: 121 EMEARLDELADTLQIKHILDHRTYEVSGGQQQRAACARAIIHNPALILADEPTGNLDSKS 180 Query: 178 AGEVMNLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNI 237 A +VMN LA++N + T+L+VTHDA AASFC R++FIKDGRF SE++RG++R F+Q+I Sbjct: 181 AKQVMNTLAQLNEEKEATILLVTHDATAASFCKRIVFIKDGRFFSEIHRGTNRQVFYQSI 240 Query: 238 IDMLSLLGGGGHDLPAVR 255 +D LS+LGG H+ R Sbjct: 241 LDTLSVLGGDFHEFENYR 258 >ref|NP_783753.1| ABC transporter ATP-binding protein [Clostridium tetani] gb|AAO37420.1| ABC transporter ATP-binding protein [Clostridium tetani] Length = 252 Score = 311 bits (798), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 150/251 (59%), Positives = 192/251 (76%) Query: 1 LPILDVHNLSKIYEGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDEPTS 60 + IL+V ++ KIY GKV+ ALN + F +E+GEFV IMGPSGSGKTTLLN ++TID PT Sbjct: 1 MSILEVKDIEKIYSGKVNYTALNGVNFELEKGEFVAIMGPSGSGKTTLLNCVSTIDSPTR 60 Query: 61 GEVMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQEME 120 GE++IN + P L + A FRR+ELGFVFQ FNL++TLTVEEN++LPLTL + + M+ Sbjct: 61 GEIIINNKRPHELDDDNLAKFRRQELGFVFQDFNLVNTLTVEENIILPLTLDSVSRRVMK 120 Query: 121 YRLGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKAAGE 180 RL ++ LGI LL KRT EISGGQ QRVAIAR++IH PSL+LADEPTG+LDSKA + Sbjct: 121 DRLKISSNLLGIEKLLKKRTFEISGGQAQRVAIARSIIHEPSLLLADEPTGNLDSKAVKD 180 Query: 181 VMNLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNIIDM 240 VM L +N TT+LMVTHDA ASFC+RVIFIKDG+ ++E++ G S++ F++ IIDM Sbjct: 181 VMELFVSINKKLNTTILMVTHDAYVASFCNRVIFIKDGKLYNEIHSGDSQSEFYEKIIDM 240 Query: 241 LSLLGGGGHDL 251 LS LGGG D+ Sbjct: 241 LSFLGGGRSDI 251 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 361,828,274 Number of extensions: 14401861 Number of successful extensions: 117493 Number of sequences better than 1.0e-05: 21571 Number of HSP's gapped: 95439 Number of HSP's successfully gapped: 23005 Length of query: 256 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 133 Effective length of database: 423,280,401 Effective search space: 56296293333 Effective search space used: 56296293333 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 124 (52.4 bits)