BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0040.p
         (86 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00098265.1| COG2931: RTX toxins and related Ca2+-binding ...    60   2e-08
ref|ZP_00099362.1| COG4625: Uncharacterized protein with a C-ter...    57   1e-07
ref|ZP_00098266.1| COG3468: Type V secretory pathway, adhesin Ai...    54   1e-06

>ref|ZP_00098265.1| COG2931: RTX toxins and related Ca2+-binding proteins
           [Desulfitobacterium hafniense]
          Length = 390

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 5/53 (9%)

Query: 1   VVTNNYFADLDAFEFIITTASPSPADDPVQVSLWGKSSTGQLVTAHRLVSAEL 53
           V+T  YFADLDAFEF+ +T+S     + V +S+WGK + G LV AHR++ AEL
Sbjct: 74  VITREYFADLDAFEFVFSTSS-----ETVAISVWGKDAEGNLVDAHRVLPAEL 121


>ref|ZP_00099362.1| COG4625: Uncharacterized protein with a C-terminal OMP (outer
           membrane protein) domain [Desulfitobacterium hafniense]
          Length = 566

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 5/53 (9%)

Query: 1   VVTNNYFADLDAFEFIITTASPSPADDPVQVSLWGKSSTGQLVTAHRLVSAEL 53
           VV   YFADLDAFEF+ +T+S     + V +S+WGK + G LV AHR++ AEL
Sbjct: 64  VVLREYFADLDAFEFVFSTSS-----ETVVISVWGKDAEGNLVDAHRVLPAEL 111


>ref|ZP_00098266.1| COG3468: Type V secretory pathway, adhesin AidA [Desulfitobacterium
           hafniense]
          Length = 445

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 5/53 (9%)

Query: 1   VVTNNYFADLDAFEFIITTASPSPADDPVQVSLWGKSSTGQLVTAHRLVSAEL 53
           V+   Y+A+LDAFEF+ +T+S     + V +S+WGK + G LV AHR++ AEL
Sbjct: 64  VIIREYYANLDAFEFVFSTSS-----ETVVISVWGKDAEGNLVDAHRVLPAEL 111


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.314    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 91,753,371
Number of extensions: 2321320
Number of successful extensions: 4145
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4143
Number of HSP's successfully gapped: 3
Length of query: 86
Length of database: 757,237,578
Length adjustment: 55
Effective length of query: 31
Effective length of database: 607,907,133
Effective search space: 18845121123
Effective search space used: 18845121123
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 120 (50.8 bits)