BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0039.p (329 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_621898.1| Transcriptional regulator [Thermoanaerobacter t... 216 6e-55 gb|EAJ57249.1| unknown [environmental sequence] 205 1e-51 gb|EAI90168.1| unknown [environmental sequence] 203 4e-51 ref|NP_762052.1| Transcriptional regulator [Vibrio vulnificus CM... 202 8e-51 ref|NP_936629.1| transcriptional regulator [Vibrio vulnificus YJ... 202 9e-51 >ref|NP_621898.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM23502.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 338 Score = 216 bits (550), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 120/332 (36%), Positives = 198/332 (59%), Gaps = 6/332 (1%) Query: 1 MKVSIFDVAKKSGLSVVTVSRVINGAGS-VREKNRQKVLEAIKELDYRPNAAARSLASGK 59 M V+I D+A+ + +SV TVSRVIN V E+ RQK+L+ +KEL Y+PNA AR L + K Sbjct: 1 MAVTIKDIARLANVSVTTVSRVINNKPEGVSEETRQKILKLVKELGYQPNAIARGLVTKK 60 Query: 60 TGIIGLIVTTLQDSFFDAVVKELNEVLALHGYFLAISISTGIGSDENHYL--IQEDRVDG 117 T IGLI+ + + FF + + + + ++GY + + + E+ Y+ ++E VDG Sbjct: 61 TKTIGLIIPDISNPFFPDIARGVEDSAHIYGYNVFLCNTDDNLEKESEYIRALKEKYVDG 120 Query: 118 LILLSP-MQEDNYIVELKRRGIPYVLIDNQQPENDSYSITIDNVKGGYAAARHLLELGHT 176 +I S + + +I+EL GIP V++D + + Y + +DN +GGY A +HL++LGH Sbjct: 121 IIFTSSSIPKHEHIIELVESGIPVVIMDRRVDSENIYGVFLDNYEGGYIATKHLIDLGHE 180 Query: 177 SIAHLCGQEMFRSTRERRAGFLKALEEQGLAPFE--VVHGDFEIAQGYDTAKRWLAEGKL 234 I + G +S +ER G+ KAL + G+ E + GD++I G A+R L + K Sbjct: 181 KIGCITGPLYTKSAKERLEGYKKALLDSGIKIDEKLIFEGDYKINGGIIGAERLLKDNKD 240 Query: 235 PTAVFTGDDNIALGVINALMEAGVRIPEEVSIVGYDDHYIASQLRPHLTTLRQPADKIGM 294 +A+F +D +A G + G +IP+++S+VG+DD ++ L P L+T++QPA +G+ Sbjct: 241 MSAIFACNDLMAYGAYKTIRSFGYKIPDDISVVGFDDIQLSQILEPQLSTIKQPAYDMGL 300 Query: 295 AAADMLLKRIGGTMKRGANVRIDPELIVREST 326 AA ML+K I G + + P+L++R+ST Sbjct: 301 TAARMLIKLIEGKKLKKKIINFRPQLVIRQST 332 >gb|EAJ57249.1| unknown [environmental sequence] Length = 334 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/332 (38%), Positives = 187/332 (56%), Gaps = 9/332 (2%) Query: 4 SIFDVAKKSGLSVVTVSRVINGAGSVREKNRQKVLEAIKELDYRPNAAARSLASGKTGII 63 +I DVA ++G+S+ TVS V+N V E QKVLEA+ EL+Y PN+ ARSL T I Sbjct: 3 TIKDVASRAGVSISTVSHVLNHTRRVSEDATQKVLEAVAELNYAPNSVARSLKINSTKTI 62 Query: 64 GLIVTTLQDSFFDAVVKELNEVLALHGYFLAISISTGIGSDENHYL--IQEDRVDGLILL 121 G++VTT + FF VV+ + GY L + + + +YL + E RVDGL++L Sbjct: 63 GMLVTTSANPFFAEVVQGVEAYCFEQGYSLILCNTENQPPRQQYYLRMLMEKRVDGLLVL 122 Query: 122 SPMQEDNYIVELKR--RGIPYVLIDNQQPENDSYSITIDNVK-GGYAAARHLLELGHTSI 178 D + ++ R + +P V++D E D ++ DN + G A RHLLE GH I Sbjct: 123 G-TDIDTPLRDMLRIHKNVPQVVLD-WGTECDFANVINDNARIGARLAVRHLLEQGHRDI 180 Query: 179 AHLCGQEMFRSTRERRAGFLKALEEQGLA--PFEVVHGDFEIAQGYDTAKRWLAEGKLPT 236 + GQ +T++R G AL EQGL ++ GD+E G+D +R LA PT Sbjct: 181 VCITGQLAKPTTQQRLDGVRDALGEQGLTLKDEQIFEGDYESQSGFDAMQRILALKPRPT 240 Query: 237 AVFTGDDNIALGVINALMEAGVRIPEEVSIVGYDDHYIASQLRPHLTTLRQPADKIGMAA 296 AVF DD +A+G I A EAGV++P+++S++GYDD +A P LTT+R P ++G+ A Sbjct: 241 AVFAFDDPMAIGAICAAWEAGVKVPDDISMIGYDDVEMARFSSPPLTTIRHPKAELGLLA 300 Query: 297 ADMLLKRIGGTMKRGANVRIDPELIVRESTSS 328 L+ RI ++ + PELIVR S S Sbjct: 301 VQQLVSRIRNKELEVESMTVQPELIVRRSVKS 332 >gb|EAI90168.1| unknown [environmental sequence] Length = 334 Score = 203 bits (517), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 187/331 (56%), Gaps = 5/331 (1%) Query: 4 SIFDVAKKSGLSVVTVSRVINGAGSVREKNRQKVLEAIKELDYRPNAAARSLASGKTGII 63 +I +VA +G+S TVS VIN V E+ R++V A++EL+Y P+ ARSL +T I Sbjct: 3 NIKEVAALAGVSTTTVSHVINETRFVAEETRERVFAAMRELNYAPSLVARSLKVKETNSI 62 Query: 64 GLIVTTLQDSFFDAVVKELNEVLALHGYFLAISISTGIGSDENHYL--IQEDRVDGLILL 121 G++VTT + FF VV+ + GY L + + G YL + RVDGL+++ Sbjct: 63 GMLVTTSSNPFFAEVVRGVERYCFEQGYNLMLGNTEGQAETALSYLKMMLRKRVDGLLIM 122 Query: 122 SPMQEDNYIVELKR-RGIPYVLIDNQQPENDSYSITIDNVKGGYAAARHLLELGHTSIAH 180 + +L + +P V++D D I ++ +GGY A RHLL LGHT+I Sbjct: 123 CSEGQQEVFNQLDWLKSLPVVVMDWGMESADVDLIADNSHRGGYLATRHLLGLGHTAIGC 182 Query: 181 LCGQEMFRSTRERRAGFLKALEEQGLA--PFEVVHGDFEIAQGYDTAKRWLAEGKLPTAV 238 + G +R+AGF +A++E GL P V GDF+ A G+ R LA + PTA+ Sbjct: 183 ITGPHSRAPANQRQAGFEQAMQEAGLTVNPEWVQEGDFDCASGHQAMTRLLALPERPTAL 242 Query: 239 FTGDDNIALGVINALMEAGVRIPEEVSIVGYDDHYIASQLRPHLTTLRQPADKIGMAAAD 298 F +D +A+G I+A +AG+ IP ++SIVGYD+ +A + P LTT+ QP +++G A Sbjct: 243 FVCNDMMAMGAISAAHQAGLVIPRDLSIVGYDNVALAEFMSPPLTTVNQPKEELGRLAVT 302 Query: 299 MLLKRIGGTMKRGANVRIDPELIVRESTSSK 329 LL RI G + +DP+L++R+S + + Sbjct: 303 RLLARINGEAVADHLITVDPDLVIRDSCAPR 333 >ref|NP_762052.1| Transcriptional regulator [Vibrio vulnificus CMCP6] gb|AAO07042.1| Transcriptional regulator [Vibrio vulnificus CMCP6] Length = 339 Score = 202 bits (515), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 126/325 (38%), Positives = 183/325 (56%), Gaps = 6/325 (1%) Query: 7 DVAKKSGLSVVTVSRVINGAGSVREKNRQKVLEAIKELDY-RPNAAARSLASGKTGIIGL 65 D+AK +G+S TVS VIN V E+ ++V A KEL+Y P+A ARSL +T IG+ Sbjct: 6 DIAKLAGVSTSTVSHVINKTRFVSEEIAERVNHAAKELNYFAPSALARSLKVNRTNTIGM 65 Query: 66 IVTTLQDSFFDAVVKELNEVLALHGYFLAISISTGIGSDENHYLIQ--EDRVDGLILLSP 123 +VTT + FF VVK + GY L + + G ++ + RVDGLIL+ Sbjct: 66 LVTTSTNPFFGEVVKGVERSCYQKGYNLILCNTEGDHERMKSSIMTLLQKRVDGLILMCS 125 Query: 124 MQEDNYIVELKRR-GIPYVLIDNQQPENDSYSITIDNVKGGYAAARHLLELGHTSIAHLC 182 E + +R IP V++D S I ++++GGY AA HL+++GH I + Sbjct: 126 SLEGERLDVFERYPDIPVVVMDWGPMLFSSDKIQDNSLRGGYLAANHLIQMGHKEIGCIT 185 Query: 183 GQEMFRSTRERRAGFLKALEEQGLA--PFEVVHGDFEIAQGYDTAKRWLAEGKLPTAVFT 240 G + + R G+ +AL E GL P +V DFE GY K+ +A+G LP+A+F Sbjct: 186 GPLIKHQAQMRYEGYKRALNEHGLPFNPAWIVEADFECEGGYQAFKKIVAKGPLPSALFV 245 Query: 241 GDDNIALGVINALMEAGVRIPEEVSIVGYDDHYIASQLRPHLTTLRQPADKIGMAAADML 300 +D +A+GVINA E GV IP ++SI+GYDD +IA + P LTT+ QP ++G AA + L Sbjct: 246 CNDMMAMGVINAANEVGVEIPHDLSIIGYDDIHIAKFMTPSLTTIHQPKYRLGQAAVETL 305 Query: 301 LKRIGGTMKRGANVRIDPELIVRES 325 LK+I V+++P LI R S Sbjct: 306 LKKINKETAEVQVVQLEPTLIERNS 330 >ref|NP_936629.1| transcriptional regulator [Vibrio vulnificus YJ016] dbj|BAC96599.1| transcriptional regulator [Vibrio vulnificus YJ016] Length = 339 Score = 202 bits (514), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 125/325 (38%), Positives = 185/325 (56%), Gaps = 6/325 (1%) Query: 7 DVAKKSGLSVVTVSRVINGAGSVREKNRQKVLEAIKELDY-RPNAAARSLASGKTGIIGL 65 D+AK +G+S TVS VIN V E+ ++V A KEL+Y P+A ARSL +T IG+ Sbjct: 6 DIAKLAGVSTSTVSHVINKTRFVSEEIAERVNHAAKELNYFAPSALARSLKVNRTNTIGM 65 Query: 66 IVTTLQDSFFDAVVKELNEVLALHGYFLAISISTGIGSDENHYLIQ--EDRVDGLILLSP 123 +VTT + FF VVK + GY L + + G ++ + RVDGLIL+ Sbjct: 66 LVTTSTNPFFGEVVKGVERSCYQKGYNLILCNTEGDHERMKSSIMTLLQKRVDGLILMCS 125 Query: 124 MQEDNYIVELKRR-GIPYVLIDNQQPENDSYSITIDNVKGGYAAARHLLELGHTSIAHLC 182 E + +R IP V++D S I ++++GGY AA +L+++GH I + Sbjct: 126 SLEGERLDVFERYPDIPVVVMDWGPMLFSSDKIQDNSLRGGYLAANYLIQMGHKEIGCIT 185 Query: 183 GQEMFRSTRERRAGFLKALEEQGLA--PFEVVHGDFEIAQGYDTAKRWLAEGKLPTAVFT 240 G + + R G+ +AL E GL+ P +V DFE GY K+ +A+G LP+A+F Sbjct: 186 GPLIKHQAQMRYEGYKRALNEHGLSFNPAWIVEADFECEGGYQAFKKIVAKGPLPSALFV 245 Query: 241 GDDNIALGVINALMEAGVRIPEEVSIVGYDDHYIASQLRPHLTTLRQPADKIGMAAADML 300 +D +A+GVINA E VRIPE++S++GYDD +IA + P LTT+ QP ++G AA + L Sbjct: 246 CNDMMAMGVINAAKELNVRIPEDLSVIGYDDIHIAKFMTPSLTTIHQPKYRLGQAAVETL 305 Query: 301 LKRIGGTMKRGANVRIDPELIVRES 325 LK+I V+++P LI R S Sbjct: 306 LKKINKETAEVQVVQLEPTLIERNS 330 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 465,916,069 Number of extensions: 19326986 Number of successful extensions: 57524 Number of sequences better than 1.0e-05: 1304 Number of HSP's gapped: 55381 Number of HSP's successfully gapped: 1304 Length of query: 329 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 203 Effective length of database: 415,135,104 Effective search space: 84272426112 Effective search space used: 84272426112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)