BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0033.p (385 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_396415.1| AGR_pAT_709p [Agrobacterium tumefaciens] >gi|17... 244 2e-63 gb|EAA64290.1| hypothetical protein AN1583.2 [Aspergillus nidula... 157 5e-37 ref|NP_102834.1| succinyl-diaminopimelate desuccinylase [Mesorhi... 152 9e-36 ref|NP_377491.1| 382aa long hypothetical succinyl-diaminopimelat... 148 2e-34 ref|ZP_00005859.1| COG0624: Acetylornithine deacetylase/Succinyl... 138 2e-31 >ref|NP_396415.1| AGR_pAT_709p [Agrobacterium tumefaciens] ref|NP_535849.1| acetylornithine deacetylase [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||AG3218 acetylornithine deacetylase [imported] - Agrobacterium tumefaciens (strain C58, Dupont) plasmid AT gb|AAK90856.1| AGR_pAT_709p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL46165.1| acetylornithine deacetylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 387 Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 140/375 (37%), Positives = 200/375 (53%), Gaps = 3/375 (0%) Query: 10 RVIQLLADLIGFQSVNPGGTEGDAAAYVAKVMRKAGCEVELQEIEPGRPNVIARLKGAGG 69 R+ + LA++I +S NP G E D A YV ++++ G V L E +PGR NV AR++ G Sbjct: 9 RMKRELAEIIAIRSENPPGGEADVAVYVERLLKDEGFSVSLTEYKPGRFNVEARIEN-GP 67 Query: 70 GRTIILNTHMDVVPAGEGWSSDPFTLLRKGERVYGRGVMDAKGPLXXXXXXXXXXXXXXX 129 G NTHMD VPAG+GW++D F L +++GRG D KGPL Sbjct: 68 GPVFAFNTHMDTVPAGDGWTTDAFILREDDGKLFGRGACDCKGPLIAMIEAMRMLAADRT 127 Query: 130 HLPGDIVLAAVVDEEAASLGARNLPDNLHG-DLAVIGEATAGNLAVAHRGSIRPVLAAEG 188 G ++ V DEE AS GA+ D AV+GE T+ AH+GS+RPV+ G Sbjct: 128 AWSGTLLGVFVGDEEIASEGAKYYAAARPKIDFAVVGEPTSNTTYSAHKGSLRPVVRVHG 187 Query: 189 VSAHSSTPHLGVNAVSLMVRTLMALEDFAEQELTKRLHPLTGQSTLSVTVINGGIKESMI 248 V+AHS TPHLG NA+ + L +E F + KR HPL G+++L+VT I+GG ++++ Sbjct: 188 VTAHSGTPHLGDNAIYRAGQLLTLVEAFHNNVVRKRTHPLVGEASLTVTRISGGHADNVL 247 Query: 249 PDRCEALIDRRLIPGEAEEDALQEIRQIIA-GLPALGGRVRIDRLVPTTGVASETRPDHP 307 P C+ L+DRR++PGE+E+ QE ++ G + I TTG A+ET D Sbjct: 248 PGSCDLLLDRRMVPGESEDAVKQEFATLLKDAYDRFGVKAEIVDYKATTGSATETAADQS 307 Query: 308 MVELAAAAIERVYGRRPELTGLTANCDMTHFVKRGIPSVIYGPGDFSVAHTIGEWVTVSE 367 +V + A P G CD+ HF G + GPG SVAH E+V + E Sbjct: 308 IVAASLEACRASGTSDPGPFGFQGGCDLVHFRSLGAQGTVIGPGSLSVAHKADEFVPLDE 367 Query: 368 LENASRVYASIAMEV 382 S +Y +A ++ Sbjct: 368 FVTCSVIYRDVARKM 382 >gb|EAA64290.1| hypothetical protein AN1583.2 [Aspergillus nidulans FGSC A4] Length = 393 Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 120/387 (31%), Positives = 178/387 (45%), Gaps = 21/387 (5%) Query: 4 PVIRSERVIQLLADLIGFQSVNPGGTEGDA-----AAYVAKVMRKAGCEVELQEIEPGRP 58 P + + V+ L L+ S PG A A Y+A +R G E E PGRP Sbjct: 9 PDVTIDDVVSLTQTLVQIDSSTPGSGSNTAGETTIATYIAAWLRHRGIEYHWIEETPGRP 68 Query: 59 NVIARLKGAGGGRTIILNTHMDVVPAGEGWSSDPFTLLRKGERVYGRGVMDAKGPLXXXX 118 +V+A ++G+GGG+T++ N H D V +G+ DP + R+YGRG D K L Sbjct: 69 SVVAVVRGSGGGKTLMFNGHTDTVTL-QGYDGDPLSGRIADGRLYGRGSADMKSGL--AA 125 Query: 119 XXXXXXXXXXXHLPGDIVLAAVVDEEAASLGARN-LPDNLHGDLAVIGEATAGNLAVAHR 177 HL GD++LAAV DEE S+G L D AVI E T + AH+ Sbjct: 126 AMTAIAGAKKLHLRGDVILAAVADEECDSIGTEQVLAAGWRADAAVIAEPTEFAIINAHK 185 Query: 178 GSIRPVLAAEGVSAHSSTPHLGVNAVSLMVRTLMALEDFAEQELTKR--LHPLTGQSTLS 235 G + + G++AH S P LGV+A+ L+ L+ +A Q L +R T + Sbjct: 186 GYVLFEVDIHGIAAHGSRPDLGVDAICKAGYFLVELDGYA-QSLQQRGPSRVNTDAPNVH 244 Query: 236 VTVINGGIKESMIPDRCEALIDRRLIPGEAEEDALQEIRQIIAGL----PALGGRVRIDR 291 +I GG + + P +C I+RR I GE + +E+ I+ L P +R+ Sbjct: 245 AGIIRGGAEINSYPAKCTISIERRTIAGETPDSVRKELLAILETLASTVPNFSFDLRMTS 304 Query: 292 LVPTTGVASETRPDHPMVELAAAAIERVYGRRPELTGLTANCDMTHFVKRGIPSVIYGPG 351 P +A PDH V+L A + G P + T DM + GIP VI+GP Sbjct: 305 YRPPYFIA----PDHAFVKLVADHAIKTTGNAPPIRSETYWTDMALLSETGIPGVIWGPK 360 Query: 352 DFSVAHTIGEWVTVSELENASRVYASI 378 + H+ E V + + + + +I Sbjct: 361 GCGL-HSKDESVEIESIRQLADAFVAI 386 >ref|NP_102834.1| succinyl-diaminopimelate desuccinylase [Mesorhizobium loti MAFF303099] dbj|BAB48620.1| succinyl-diaminopimelate desuccinylase [Mesorhizobium loti] Length = 425 Score = 152 bits (385), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 127/411 (30%), Positives = 182/411 (44%), Gaps = 50/411 (12%) Query: 7 RSERVIQLLADLIGFQSVNP-GGTEGDAAAYVAKVMRKAGCEVELQEIE--PG------R 57 R + V+ L ADLI F ++NP G A +V +RK G E E E PG R Sbjct: 12 RRDDVVALTADLIRFPTINPPGEAYRPCAEFVGARLRKRGFETEFIRAEGTPGDTDRYPR 71 Query: 58 PNVIARLKGAGGGRTIILNTHMDVVPAGEGWSSDPFTLLRKGERVYGRGVMDAKGPLXXX 117 NV+AR G G + N+H+DVV AG+GW+ DPF + + RVYGRG D KG L Sbjct: 72 VNVVARFDGRSPGACVHFNSHIDVVEAGDGWTVDPFAGIVRDGRVYGRGACDMKGGLAAS 131 Query: 118 XXXXXXXXXXXXHLPGDIVLAAVVDEEA---------ASLGARNLPDNLHGDLAVIGEA- 167 PG I ++ VDEE+ A LG + P H +I E Sbjct: 132 IIAAEAFMEVYPDFPGTIEISGTVDEESGGFGGVAHLAGLGYFSKPRVDH---VIIPEPL 188 Query: 168 TAGNLAVAHRGSIRPVLAAEGVSAHSSTPHLGVNAVSLMVRTLMALEDFAEQELTKRLHP 227 + + HRG + +G AH S P LG NAV M L A ED L +++ Sbjct: 189 NKDRICLGHRGVWWAEIETKGEIAHGSMPFLGDNAVRHMGAVLQAFEDELFPALDRKMTR 248 Query: 228 L------TGQSTLSVTVINGGIKESM--------IPDRCEALIDRRLIPGEAEEDALQEI 273 + +ST+++ I+GG E +PD C IDRR + EED L + Sbjct: 249 MPVVPEGARRSTMNINSIHGGQTEDFRPGLPSPNVPDSCRLTIDRRFL---LEED-LATV 304 Query: 274 RQIIAGLPALGGRVR------IDRLVPTTGVASETRPDHPMVELAAAAIERVYGRRPELT 327 + + G+ R R I L+ + +E D P+V+ A I ++ R P+ Sbjct: 305 KGEVTGILERLKRERKKFDYEIRDLMEVLPLMTER--DAPVVKAVAQGIHAIFDREPDYV 362 Query: 328 GLTANCDMTHFVKRG--IPSVIYGPGDFSVAHTIGEWVTVSELENASRVYA 376 D H + G + YGPG +AH EWV + ++ +++V A Sbjct: 363 ISPGTYDQKHIARIGHIYDCIAYGPGILDLAHRPDEWVGIEDMVESAKVMA 413 >ref|NP_377491.1| 382aa long hypothetical succinyl-diaminopimelate desuccinylase [Sulfolobus tokodaii] dbj|BAB66600.1| 382aa long hypothetical succinyl-diaminopimelate desuccinylase [Sulfolobus tokodaii] Length = 382 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 110/382 (28%), Positives = 182/382 (47%), Gaps = 33/382 (8%) Query: 13 QLLADLIGFQSVNPGGTE-GDAAAYVAKVMRKAGCEVELQEIEPGRPNVIARLKGAGGGR 71 +L + LI F +VNP D A+++ + G ++ E E G P VI+ G + Sbjct: 5 ELTSKLIQFPTVNPPAENLHDCASFIKDYLSSQGFSSQVIEFEKGWPVVISE-NGNKNDK 63 Query: 72 TIILNTHMDVVPAGE--GWSSDPFTLLRKGERVYGRGVMDAKGPLXXXXXXXXXXXXXXX 129 I+LN H DVVP G+ W +PF+ ++VYGRG D KG L Sbjct: 64 LIMLNGHYDVVPTGDVNKWKYNPFSGKIIDDKVYGRGSTDMKGGLAVFMKVFTEIADKVN 123 Query: 130 HLPGDIVLAAVVDEEAA-SLGARNLPDNLHGDLAVIGEATAGN-LAVAHRGSIRPVLAAE 187 + +++ AV DEE+ G++ L D DL +I E + + + + +G ++ L A+ Sbjct: 124 Y---NLIFTAVPDEESGGDKGSKYLADRYKPDLVLISEPSGSDSINIGEKGLLQVKLIAK 180 Query: 188 GVSAHSSTPHLGVNAVSLMVRTLMALE----------DFAEQELTKRL-HPLTGQSTLSV 236 G AH S P LG NA+ +V+ L+ LE D + +T R+ + L + Sbjct: 181 GKVAHGSLPSLGENAIMKLVKDLIQLEKIKEIEIKIPDNLIEAMTARIPSEIAKNDVLRI 240 Query: 237 T----VINGGIKESMIPDRCEALIDRRLIPGEAEEDALQEIRQIIAGLPALGGRVRIDRL 292 + VI GG+K +++PD E +D R+ PG +AL +R ++ G + +D Sbjct: 241 SFNPGVIKGGVKVNVVPDYAEVEVDMRIPPGINSGEALNIVRSLVKQ----GEIIPLDIS 296 Query: 293 VPTTGVASETRPDHPMVELAAAAIERVYGRRPELTGLTANCDMTHFVKRGIPSVIYGPGD 352 P T PD+ V+ I + G + + +T D +F +G+P ++YGPG+ Sbjct: 297 EPNY-----TPPDNEFVKKLENIIYKQLGIKAKKYIITGATDGRYFRYKGVPVIVYGPGE 351 Query: 353 FSVAHTIGEWVTVSELENASRV 374 +AH E+++ EL N+ V Sbjct: 352 LGMAHAYDEFISFKELRNSYTV 373 >ref|ZP_00005859.1| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Rhodobacter sphaeroides] Length = 439 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 125/426 (29%), Positives = 179/426 (42%), Gaps = 77/426 (18%) Query: 7 RSERVIQLLADLIGFQSVNPGGTEGDAAAYVAKVMRKAGCEVELQEIE--PG------RP 58 R ++ L DL+ ++NP G A + EVEL PG R Sbjct: 29 RRADLVALTQDLVRIPTLNPPGRNYRALCDMLAARLAPQFEVELVRAHGAPGDSETYPRW 88 Query: 59 NVIARLKGAGGGRTIILNTHMDVVPAGEGWSSDPFTLLRKGERVYGRGVMDAKGPLXXXX 118 N+IAR +GA G + N+H DVV G GW+ DPF +G+R+YGRG D KG L Sbjct: 89 NLIARRQGARDGDCVHFNSHHDVVEVGHGWTRDPFGAEVEGDRLYGRGACDMKGGLAASV 148 Query: 119 XXXXXXXXXXXHLPGDIVLAAVVDEEAASLG-----ARN----------LPDNLHGDLAV 163 G I ++A DEE+ G AR +P+ LH D Sbjct: 149 IAAEAFLAVCPDFAGSIEISATADEESGGFGGVAYLARQGRFAHVQHVLIPEPLHKDRIC 208 Query: 164 IGEATAGNLAVAHRGSIRPVLAAEGVSAHSSTPHLGVNAVSLMVRTLMALEDFAEQELTK 223 +G HRG + +G AH S P LG +A+ M L E+ + Sbjct: 209 LG----------HRGVWWAEVETQGRIAHGSMPFLGDSAIRHMGALL--------AEIEE 250 Query: 224 RLHPLTG--------------QSTLSVTVINGGIKE----------SMIPDRCEALIDRR 259 RL+PL QSTL++ I+GG E + DRC +IDRR Sbjct: 251 RLYPLLATRTTAMPVTPEGARQSTLNINSIHGGEPEPEPGYTGLPAPCVADRCRIVIDRR 310 Query: 260 LIPGEAEEDALQEIRQIIAGL----PALGGRVR-IDRLVPTTGVASETRPDHPMVELAAA 314 + E ++ E+R + L P +R + + PT T D P+V AA Sbjct: 311 FLIEEDLDEVKAELRALAERLAEARPGFAFEIRDLFEVRPTL-----TDRDAPVVRSTAA 365 Query: 315 AIERVYGRRPELTGLTANCDMTHFVKRG--IPSVIYGPGDFSVAHTIGEWVTVSELENAS 372 AIERV R+ E D H + G + YGPG +AH EWV ++++ +++ Sbjct: 366 AIERVLARQAEYVVSPGTYDQKHIDRIGKLKNCIAYGPGLLHLAHQPDEWVGIADMVDSA 425 Query: 373 RVYASI 378 +V A + Sbjct: 426 KVMALV 431 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 534,272,590 Number of extensions: 21490616 Number of successful extensions: 57279 Number of sequences better than 1.0e-05: 732 Number of HSP's gapped: 56522 Number of HSP's successfully gapped: 734 Length of query: 385 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 258 Effective length of database: 412,420,005 Effective search space: 106404361290 Effective search space used: 106404361290 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)