BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0031.p (391 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_396412.1| AGR_pAT_704p [Agrobacterium tumefaciens] >gi|17... 308 2e-82 ref|ZP_00004759.1| COG0006: Xaa-Pro aminopeptidase [Rhodobacter ... 285 1e-75 ref|NP_085895.1| prolidase [Mesorhizobium loti MAFF303099] >gi|1... 268 1e-70 ref|ZP_00066483.1| COG0006: Xaa-Pro aminopeptidase [Microbulbife... 243 5e-63 ref|NP_085601.1| HYPOTHETICAL HYDROLASE/PEPTIDASE [Mesorhizobium... 241 1e-62 >ref|NP_396412.1| AGR_pAT_704p [Agrobacterium tumefaciens] ref|NP_535847.1| peptidase [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||AE3218 peptidase [imported] - Agrobacterium tumefaciens (strain C58, Dupont) plasmid AT gb|AAK90853.1| AGR_pAT_704p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL46163.1| peptidase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 389 Score = 308 bits (788), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 155/378 (41%), Positives = 216/378 (57%), Gaps = 4/378 (1%) Query: 8 FSRNEFHSRLHNVQSELGLKGLNGMLIHTPENIFYLTGYQSPGYYMYQCLVVPVSGDPVL 67 F R E+ R + L GL+ +++ PENIFYL G Q+PGYY +Q L++P GDPV Sbjct: 15 FPREEYARRQALAREGLSAAGLDALIVTGPENIFYLCGQQTPGYYTFQALILPADGDPVF 74 Query: 68 VLRRGELSNVQTYSWLPESQVRTYDDTNDPVALTADTVRELSIAPGALGLETGSWFLPVR 127 ++R+ E N +++ ++ V Y D DP+AL + +A + ++ WFLP+ Sbjct: 75 LIRQLEYFNFIANTFISDAVV--YQDGEDPLALLVKLIESRGLASRRIAIDKRGWFLPIA 132 Query: 128 SYQKLEKMLGGFKLTDAQGTIEAFRVIKSPAEIAYIREACTVADRSMQAGLDAIRAGVNE 187 Y+ L+ LG + D G IE FR IKSP E+ + +A D M+AGL A+R G E Sbjct: 133 VYEALQARLG--TIGDGAGVIERFRAIKSPLEVEKLEKAAAYVDEGMRAGLAAVRVGATE 190 Query: 188 DEXXXXXXXXXXXXGGEYLGMEPFISSGFRSGNMHAAWGHKVIGDGETLLLEVAGARNRY 247 ++ G EYLGMEP +S G R+G H W + I DG+ LE+A +RY Sbjct: 191 NDLVSAMLGSAIAAGSEYLGMEPLVSVGPRTGVPHGTWRRRAITDGDPAFLEMAACHDRY 250 Query: 248 HGALMRAAYTGTPTDEIKRVTGVCIASLNAALEVIRPGVTAGEVDEACRGTIERAGLYEQ 307 H ALMR+A+ G P E + C +L +L+ IRPGV AC+ I+RAG + Sbjct: 251 HAALMRSAWIGEPPREAVDMMKACQEALQVSLDTIRPGVACEVPHIACQKVIDRAGYTDN 310 Query: 308 FRKRTGYSIGVAFAPDWGEGHIMSLQRDDSRVLLPGMVFHIPPALRVPNHYGVGFSETIL 367 F+KR GYS+G++FAPDWGEG I+SL L PGM FH+PPALR+ + VG SETI+ Sbjct: 311 FKKRLGYSVGISFAPDWGEGAILSLNTGVKTELQPGMTFHLPPALRIYGRFTVGVSETIV 370 Query: 368 VTETGCEVLTKLPRELTL 385 VTETG L + R L + Sbjct: 371 VTETGYRALGSIDRNLLI 388 >ref|ZP_00004759.1| COG0006: Xaa-Pro aminopeptidase [Rhodobacter sphaeroides] Length = 394 Score = 285 bits (729), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 155/377 (41%), Positives = 224/377 (59%), Gaps = 4/377 (1%) Query: 7 IFSRNEFHSRLHNVQSELGLKGLNGMLIHTPENIFYLTGYQSPGYYMYQCLVVPVSGDPV 66 +F EF R+ +Q+ G + +++ PENIF+ TG Q+ GY+ +Q LVVPV G PV Sbjct: 19 VFPAAEFEGRIARLQAATADLGADALVLLGPENIFWATGRQTAGYFAFQALVVPVEGAPV 78 Query: 67 LVLRRGELSNVQTYSWLPESQVRTYDDTNDPVALTADTVRELSIAPGALGLETGSWFLPV 126 L++R+ E + + +WL + +R + D DP A VR+L + G + +E G+WF+ Sbjct: 79 LLVRQLETTGARASTWL--ADIRAWQDGEDPAAALGSLVRDLGL--GRIAMERGAWFIGQ 134 Query: 127 RSYQKLEKMLGGFKLTDAQGTIEAFRVIKSPAEIAYIREACTVADRSMQAGLDAIRAGVN 186 +++ + L G L D G E R +KSPAE + IR+A A+ ++ A ++A RAGV+ Sbjct: 135 DLSERIAQALAGVALIDGSGVAERLRAVKSPAEQSAIRKAAGYAEAAIAASIEACRAGVS 194 Query: 187 EDEXXXXXXXXXXXXGGEYLGMEPFISSGFRSGNMHAAWGHKVIGDGETLLLEVAGARNR 246 E+E G E + MEP +SSG RSG HA W +++ G+ + LE+A + +R Sbjct: 195 ENEVAAAMMGAAIRAGSEAMAMEPLVSSGPRSGVPHATWRRRLLEPGDGVFLELAASHDR 254 Query: 247 YHGALMRAAYTGTPTDEIKRVTGVCIASLNAALEVIRPGVTAGEVDEACRGTIERAGLYE 306 YH ALMR+ + G P E R+ +L+AAL +RPG EA + I+ AG Sbjct: 255 YHAALMRSVWIGPPPAEAARMMDTAERALDAALAALRPGAPCAAPHEAAQAVIDAAGYTA 314 Query: 307 QFRKRTGYSIGVAFAPDWGEGHIMSLQRDDSRVLLPGMVFHIPPALRVPNHYGVGFSETI 366 FRKR GYS+G AFAPDWGEG I+SL R+L PGMVFH+P LR Y VG SET+ Sbjct: 315 AFRKRIGYSMGAAFAPDWGEGAILSLFTGVDRLLEPGMVFHLPATLRSYGDYTVGASETV 374 Query: 367 LVTETGCEVLTKLPREL 383 ++TETG EVL+ LPR++ Sbjct: 375 ILTETGIEVLSTLPRQM 391 >ref|NP_085895.1| prolidase [Mesorhizobium loti MAFF303099] dbj|BAB54982.1| prolidase [Mesorhizobium loti] Length = 379 Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 147/384 (38%), Positives = 211/384 (54%), Gaps = 7/384 (1%) Query: 6 LIFSRNEFHSRLHNVQSELGLKGLNGMLIHTPENIFYLTGYQSPGYYMYQCLVVPVSGDP 65 + FS E+ RL VQ+ + +G+ G+L+H+P NI YLTGY + G++ YQ L VP G+P Sbjct: 1 MAFSPQEYRERLAKVQNAIQQRGMVGLLVHSPHNICYLTGYHTSGFFAYQVLFVPADGEP 60 Query: 66 VLVLRRGELSNVQTYSWLPESQVRTYDDTNDPVALTADTVREL--SIAPGALGLETGSWF 123 +L++R E +N YSWL + Y D DP ++T + EL + A +G+E + Sbjct: 61 LLLVRELERTNADEYSWLALDRQAVYLDNEDPASVTGRWLAELGWTAASDPIGVEKTCFN 120 Query: 124 LPVRSYQKLEKMLGGFKLTDAQGTIEAFRVIKSPAEIAYIREACTVADRSMQAGLDAIRA 183 L VR Y++L K+ D G + R+IKS EIAY R A + D +M+ GL+A+ Sbjct: 121 LAVRDYEELCHAARPNKVVDGSGIVGRVRLIKSSQEIAYARRAAEITDIAMRTGLEALAV 180 Query: 184 GVNEDEXXXXXXXXXXXXGGEYLGMEPFISSGFRSGNMHAAWGHKVIGDGETLLLEVAGA 243 G E E G EY + ++SSG+R HA KVI G+ L E+ Sbjct: 181 GKEELEIAAAIQEQQVLGGSEYTSLPNYLSSGYRMRIGHATPTEKVIEAGDLLKFEITSC 240 Query: 244 RNRYHGALMRAAYTGTPTDEIKRVTGVCIASLNAALEVIRPGVTAGEVDEACRGTIERAG 303 RY A+MR A G P+ EI + + I+ + A +++PG AGEVD A R + AG Sbjct: 241 VKRYSAAMMRTAVMGAPSAEIAQAADLLISCQDRAFSIMKPGAIAGEVDAAVRQPVLEAG 300 Query: 304 LYEQFRKRTGYSIGVAFAPDWGEGHIMSLQRDDSRVLLPGMVFHIPPALRVPNHYGVGFS 363 L + + R GYS+G+ F P GE + D+ +L GM+FH+ + N G+ FS Sbjct: 301 LRKTYYPRVGYSLGIGFPPVSGEWEVCDFMAGDTWLLQAGMIFHM-----LVNANGISFS 355 Query: 364 ETILVTETGCEVLTKLPRELTLAK 387 ETILVTETG E LT LPREL +A+ Sbjct: 356 ETILVTETGSERLTSLPRELYIAQ 379 >ref|ZP_00066483.1| COG0006: Xaa-Pro aminopeptidase [Microbulbifer degradans 2-40] Length = 434 Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 133/386 (34%), Positives = 202/386 (52%), Gaps = 3/386 (0%) Query: 6 LIFSRNEFHSRLHNVQSELGLKGLNGMLIHTPENIFYLTGYQSPGYYMYQCLVVPVSGDP 65 + F +E+ R++ +++ + + L+ ++I PENI YLT YQ+ Y +Q LVVP+ +P Sbjct: 7 MTFPADEYERRINELRARIAERHLDAVVISDPENIMYLTDYQTTSYSFFQALVVPLEKEP 66 Query: 66 VLVLRRGELSNVQTYSWLPESQVRTYDDTNDPVALTADTVRELSIAPGALGLETGSWFLP 125 ++ R E SNV +W+ R Y DT D + + D ++E +A +G E S F P Sbjct: 67 FMITRALEESNVIARTWV--DLTRPYPDTGDAMQMLVDALKEFGLANKRIGYERNSNFFP 124 Query: 126 VRSYQKLEKMLGGFKLTDAQGTIEAFRVIKSPAEIAYIREACTVADRSMQAGLDAIRAGV 185 + L KL D G +E R+ KS EIA +++A + M AG+ A RAG Sbjct: 125 AYHQDVIHTTLKDGKLLDCFGIVEEGRICKSAVEIALMKKAALATEAGMAAGIAACRAGA 184 Query: 186 NEDEXXXXXXXXXXXXGGEYLGMEPFISSGFRSGNMHAAWGHKVIGDGETLLLEVAGARN 245 E+E GGE + P+++SG R+ HA W +VI D E + LEV G Sbjct: 185 TENEVGAAISAGMFNAGGETPAVMPYVTSGPRTMIGHATWEGRVIQDNEHVFLEVGGCYR 244 Query: 246 RYHGALMRAAYTGTPTDEIKRVTGVCIASLNAALEVIRPGVTAGEVDEACRGTIERAGLY 305 RYH A+MR G TD + +L+A +++PG+T +VD R I + Sbjct: 245 RYHTAMMRTVILGDLTDSMHIAQETMKRALDAVHSMVQPGMTVSDVDNLVRNIISDNPVG 304 Query: 306 EQFRKRTGYSIGVAFAPDWGEGHIMSLQRDDSRVLLPGMVFHIPPALR-VPNHYGVGFSE 364 + R+GYSIG+AF P W EG+I+SL++ +S VL GM FH+ P + V G S+ Sbjct: 305 ARLITRSGYSIGIAFPPSWDEGYIVSLKQGESTVLKEGMTFHLIPWMWGVDGDKTCGISD 364 Query: 365 TILVTETGCEVLTKLPRELTLAKGGN 390 TI +T+ GCE + R+ T+ N Sbjct: 365 TIHITDEGCESFFSMERDFTVKPSEN 390 >ref|NP_085601.1| HYPOTHETICAL HYDROLASE/PEPTIDASE [Mesorhizobium loti MAFF303099] dbj|BAB54442.1| hypothetical hydrolase/peptidase [Mesorhizobium loti] Length = 378 Score = 241 bits (616), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 192/370 (51%), Gaps = 9/370 (2%) Query: 8 FSRNEFHSRLHNVQSELGLKGLNGMLIHTPENIFYLTGYQSPGYYMYQCLVVPVSGDPVL 67 F+ EF +R+ VQSE+ ++G++ +L+H PENI+YLTG+Q+ GY+ YQ +V+ +GDP L Sbjct: 8 FTTEEFKTRVARVQSEMSVRGIDILLLHAPENIYYLTGHQTSGYFAYQTVVLAQAGDPQL 67 Query: 68 VLRRGELSNVQTYSWLPESQVRTYDDTNDPVALTADTVRELSIAPGALGLETGSWFLPVR 127 +LR E NV YSWLP++ T+ + +D V T VR A +GLE SWFL Sbjct: 68 LLRFLEKGNVDEYSWLPDAS--TWKEGDDVVEKTLALVRGFGAAGKRIGLEKRSWFLTSA 125 Query: 128 SYQKLEKMLGGFKLTDAQGTIEAFRVIKSPAEIAYIREACTVADRSMQAGLDAIRAGVNE 187 L L + DA ++ RVIKSPAE+ YIR A +A+ Q I G E Sbjct: 126 IADALTNGLSDATIVDASLLVDRVRVIKSPAEVGYIRRAAQIAEIEQQVAFATICDGATE 185 Query: 188 DEXXXXXXXXXXXXGGEYLGMEPFISSGFRSGNMHAAWGHKVIGDGETLLLEVAGARNRY 247 + G EY G+ I SG+R HA W K+I GE +L E G RY Sbjct: 186 AQVAAAVFAAGVNAGCEYTGLPHHIMSGYRYNVCHANWSPKIIRRGELVLFEFYGCLERY 245 Query: 248 HGALMRAAYTGTPTDEIKRVTGVCIASLNAALEVIRPGVTAGEVDEACRGTIERAGLYEQ 307 H MR G +DE+ R + +A+ +A + ++PG +A EVD R I + + + Sbjct: 246 HATQMRTVAIGHASDEVTRAADIVVAAQDAGIAAMKPGASAREVDALVRQPIRK--IRPE 303 Query: 308 FRKRTGYSIGVAFAPDWGEGHIMSLQRDDSRVLLPGMVFHIPPALRVPNHYGVGFSETIL 367 + RTGYS G+ F P E + + L GM FH+ + G G SET++ Sbjct: 304 YYNRTGYSTGIGFPPKTAEWEALDFNEQEDWELKEGMAFHM-----LALACGFGISETVV 358 Query: 368 VTETGCEVLT 377 VT G E LT Sbjct: 359 VTSNGVERLT 368 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 573,769,153 Number of extensions: 23573574 Number of successful extensions: 51674 Number of sequences better than 1.0e-05: 905 Number of HSP's gapped: 50589 Number of HSP's successfully gapped: 905 Length of query: 391 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 263 Effective length of database: 409,704,906 Effective search space: 107752390278 Effective search space used: 107752390278 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)