BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0028.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_396417.1| AGR_pAT_713p [Agrobacterium tumefaciens] >gi|17... 223 3e-57 ref|NP_356420.1| AGR_L_1255p [Agrobacterium tumefaciens] >gi|252... 194 2e-48 ref|NP_534712.1| ABC transporter, membrane spanning protein [ami... 184 2e-45 ref|NP_781241.1| cystine/glutamine permease protein [Clostridium... 172 5e-42 ref|NP_295878.1| amino acid ABC transporter, permease protein [D... 167 3e-40 >ref|NP_396417.1| AGR_pAT_713p [Agrobacterium tumefaciens] ref|NP_535851.1| ABC transporter, membrane spanning protein [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||AI3218 ABC transporter, membrane spanning protein Atu5481 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) plasmid AT gb|AAK90858.1| AGR_pAT_713p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL46167.1| ABC transporter, membrane spanning protein [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 242 Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 116/227 (51%), Positives = 154/227 (67%), Gaps = 1/227 (0%) Query: 7 VWAYLGSRAFLDGAINTMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIWIFRGI 66 V+ Y+ S AF GA+ T+ +T+ S ++ G I+AL + SR + LQ Y+W+FRG Sbjct: 6 VFDYVFSPAFFHGALLTLVITVTSLFFGMIAGLIVALLQESRIRPLQIFTLVYLWLFRGT 65 Query: 67 PVMVQLIFVYTALPQFGIRLTGFQSAFVALALNEAAYMAEIVRSGLASVGKGQHRAANAL 126 PV+ Q+IF+Y LP FG+ L+ F SA +AL+LNE AYMAEI+RSGL +V KGQ A AL Sbjct: 66 PVLFQIIFIYNVLPTFGVMLSAFVSAVIALSLNEGAYMAEIIRSGLQAVKKGQRTAGLAL 125 Query: 127 GMNNWQRMRYVVLPQAFRVIVPPTANQFIGMLKTSAMASVVGYTDLLLTAQQTASANFDY 186 GM + M Y+V+PQA R+++PPT NQ IGMLKTSA+ SVV +LLL A QTAS+NF Y Sbjct: 126 GMTRFAVMCYIVIPQAARIVLPPTGNQMIGMLKTSALVSVVAVEELLLVANQTASSNFKY 185 Query: 187 VDTLIAAVIYYLAFTALFTLVQSYLERRMDITRSRNRKSPLFSLMKR 233 + L AA IYYLA T++F Q LER +D R R ++ + SLM R Sbjct: 186 FEALTAAGIYYLALTSIFMGFQYLLERALDRKRPRGKRRSV-SLMAR 231 >ref|NP_356420.1| AGR_L_1255p [Agrobacterium tumefaciens] pir||C98210 amino acid ABC transporter, permease protein [imported] - Agrobacterium tumefaciens (strain C58, Cereon) gb|AAK89205.1| AGR_L_1255p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 233 Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 96/210 (45%), Positives = 139/210 (66%) Query: 5 EGVWAYLGSRAFLDGAINTMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIWIFR 64 EG + YL + +GA+ T+ LT+ + + LGF+IA+ +MS+++ L G A Y WIFR Sbjct: 11 EGFFEYLTNYYLFEGALVTLGLTVFAMTAGLALGFVIAVMRMSKYRFLSGPAYFYTWIFR 70 Query: 65 GIPVMVQLIFVYTALPQFGIRLTGFQSAFVALALNEAAYMAEIVRSGLASVGKGQHRAAN 124 G P++VQLI +YT LPQ GI+LT QS + L+L EAAY++EIVR+G+A+V KGQ AA Sbjct: 71 GTPLLVQLIIIYTGLPQMGIKLTVLQSTLIGLSLCEAAYLSEIVRAGIAAVPKGQINAAR 130 Query: 125 ALGMNNWQRMRYVVLPQAFRVIVPPTANQFIGMLKTSAMASVVGYTDLLLTAQQTASANF 184 A+GM Q MRY+V PQAFR+I+PP N G+LKT+++AS++ +LL Q F Sbjct: 131 AIGMTEAQVMRYIVAPQAFRIIIPPLGNSVNGVLKTTSIASIISMEELLRRTQVLIQEKF 190 Query: 185 DYVDTLIAAVIYYLAFTALFTLVQSYLERR 214 ++ A +YYLA T + L+Q +E+R Sbjct: 191 LVLELFTVAALYYLAMTTAWELIQRRIEKR 220 >ref|NP_534712.1| ABC transporter, membrane spanning protein [amino acid] [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||AF3076 hypothetical protein Atu4234 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAL45028.1| ABC transporter, membrane spanning protein [amino acid] [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 206 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/192 (46%), Positives = 129/192 (67%) Query: 23 TMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIWIFRGIPVMVQLIFVYTALPQF 82 T+ LT+ + + LGF+IA+ +MS+++ L G A Y WIFRG P++VQLI +YT LPQ Sbjct: 2 TLGLTVFAMTAGLALGFVIAVMRMSKYRFLSGPAYFYTWIFRGTPLLVQLIIIYTGLPQM 61 Query: 83 GIRLTGFQSAFVALALNEAAYMAEIVRSGLASVGKGQHRAANALGMNNWQRMRYVVLPQA 142 GI+LT QS + L+L EAAY++EIVR+G+A+V KGQ AA A+GM Q MRY+V PQA Sbjct: 62 GIKLTVLQSTLIGLSLCEAAYLSEIVRAGIAAVPKGQINAARAIGMTEAQVMRYIVAPQA 121 Query: 143 FRVIVPPTANQFIGMLKTSAMASVVGYTDLLLTAQQTASANFDYVDTLIAAVIYYLAFTA 202 FR+I+PP N G+LKT+++AS++ +LL Q F ++ A +YYLA T Sbjct: 122 FRIIIPPLGNSVNGVLKTTSIASIISMEELLRRTQVLIQEKFLVLELFTVAALYYLAMTT 181 Query: 203 LFTLVQSYLERR 214 + L+Q +E+R Sbjct: 182 AWELIQRRIEKR 193 >ref|NP_781241.1| cystine/glutamine permease protein [Clostridium tetani E88] gb|AAO35178.1| cystine/glutamine permease protein [Clostridium tetani E88] Length = 216 Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 84/196 (42%), Positives = 130/196 (66%), Gaps = 1/196 (0%) Query: 23 TMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIWIFRGIPVMVQLIFVYTALPQF 82 T++LT++S ++ L+G +AL K+S+ K+L GLA+ Y WI RG P+++QL F Y LP Sbjct: 20 TIELTIISVVLGSLIGVFVALLKLSKIKVLNGLASFYTWIIRGTPMLLQLYFFYYGLPFL 79 Query: 83 GIRLTGFQSAFVALALNEAAYMAEIVRSGLASVGKGQHRAANALGMNNWQRMRYVVLPQA 142 I L+ +A + L+LN AYMAEI+R G+ SV KGQ A ALG + Q M+ ++LPQA Sbjct: 80 NIELSAMTAAIIGLSLNSGAYMAEIIRGGIISVDKGQFEACKALGFSYGQTMKRIILPQA 139 Query: 143 FRVIVPPTANQFIGMLKTSAMASVV-GYTDLLLTAQQTASANFDYVDTLIAAVIYYLAFT 201 RV+VPPT N+FI +LK +++ SV+ G +++ AQQ+ SA F ++ + A YL T Sbjct: 140 VRVLVPPTGNEFITILKDTSLVSVLGGMEEVMRVAQQSYSATFRPLEPFLVAACIYLILT 199 Query: 202 ALFTLVQSYLERRMDI 217 +FT+V +E+++ + Sbjct: 200 TVFTIVFGKIEKKVSV 215 >ref|NP_295878.1| amino acid ABC transporter, permease protein [Deinococcus radiodurans] pir||F75308 amino acid ABC transporter, permease protein - Deinococcus radiodurans (strain R1) gb|AAF11703.1| amino acid ABC transporter, permease protein [Deinococcus radiodurans] Length = 291 Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 135/222 (60%), Gaps = 8/222 (3%) Query: 2 EFAEGVWAYLGSRAFLDGAINTMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIW 61 + E V Y + F++GA T+KLTLVS ++ +L+G I + + S L++ A+ +IW Sbjct: 69 QMPEPVGQY--ADLFVEGAQMTLKLTLVSGLIGLLVGMIAGIMRSSPSALVRAPASFFIW 126 Query: 62 IFRGIPVMVQLIFVYTALPQF------GIRLTGFQSAFVALALNEAAYMAEIVRSGLASV 115 + RG P++VQ++FVY ALP + L F SA +ALALN AY AE++R+G+ +V Sbjct: 127 LIRGTPLLVQILFVYNALPPLLKTIGINLELNEFWSAVIALALNVGAYNAEVIRAGILAV 186 Query: 116 GKGQHRAANALGMNNWQRMRYVVLPQAFRVIVPPTANQFIGMLKTSAMASVVGYTDLLLT 175 +GQ AA +LG++ Q M VVLPQA R++VPP N + +LK S++AS + +L L+ Sbjct: 187 PRGQSEAARSLGLSAGQTMNAVVLPQALRIVVPPLVNNLVALLKDSSLASTIALLELTLS 246 Query: 176 AQQTASANFDYVDTLIAAVIYYLAFTALFTLVQSYLERRMDI 217 Q+ +S +F V L YLA T + TL LE+R+ I Sbjct: 247 GQRVSSESFQPVPVLTTVAAVYLALTTVLTLFTDQLEKRVKI 288 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 291,850,310 Number of extensions: 9969177 Number of successful extensions: 43372 Number of sequences better than 1.0e-05: 2092 Number of HSP's gapped: 42398 Number of HSP's successfully gapped: 2126 Length of query: 238 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 116 Effective length of database: 425,995,500 Effective search space: 49415478000 Effective search space used: 49415478000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 124 (52.4 bits)