BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0026.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAI20930.1| unknown [environmental sequence] 108 8e-23 gb|EAK78544.1| unknown [environmental sequence] 108 9e-23 ref|NP_624078.1| Transcriptional regulator [Thermoanaerobacter t... 107 2e-22 gb|EAK44757.1| unknown [environmental sequence] 99 8e-20 ref|NP_718424.1| transcriptional regulator, GntR family [Shewane... 99 9e-20 >gb|EAI20930.1| unknown [environmental sequence] Length = 202 Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 73/195 (37%), Positives = 102/195 (52%), Gaps = 7/195 (3%) Query: 1 VYSILKQWVLSGELAPGERIDQDAVASRLGVSKMPVRSALDKLAAQDLVLLHSHRGVTVT 60 Y L+QW+ G PGERI VA+ LGV +MPVRSAL +LAA+ ++ + GVTV Sbjct: 13 TYETLRQWLTIGRFVPGERIKIRHVAAELGVGEMPVRSALQRLAAESALVNVPNCGVTVP 72 Query: 61 PLSAQHLEDIYLVRCNLEGLAVQLATELLKPEDVTLLNNMIQKQEDLANHRNPDTEAILA 120 LS + +D+ VR LEG A +L T L D+ L + + E R D + L Sbjct: 73 RLSKEQFDDVLRVRLILEGQAAELGTPHLSARDLATLEKLNDEMERAL--RTTDAKGYLD 130 Query: 121 ANREFHLFIYSLAQRPVLLSIIERLWEQSERYRRILLIQPGMVDGSLNEHRRLVELMTHR 180 AN FHL +Y A P+LL +IE +W Q LL G+LN+ EL+ Sbjct: 131 ANEAFHLILYRAAGSPLLLELIETVWLQVGPISN-LLFGDAQFAGTLNDAHD--ELLNAA 187 Query: 181 QAEEAS--RFLVEHN 193 +A +A+ R +EH+ Sbjct: 188 KARDAAGVRRAIEHD 202 >gb|EAK78544.1| unknown [environmental sequence] Length = 215 Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 73/195 (37%), Positives = 102/195 (52%), Gaps = 7/195 (3%) Query: 1 VYSILKQWVLSGELAPGERIDQDAVASRLGVSKMPVRSALDKLAAQDLVLLHSHRGVTVT 60 Y L+QW+ G PGERI VA+ LGV +MPVRSAL +LAA+ ++ + GVTV Sbjct: 13 TYETLRQWLTIGRFVPGERIKIRHVAAELGVGEMPVRSALQRLAAESALVNVPNCGVTVP 72 Query: 61 PLSAQHLEDIYLVRCNLEGLAVQLATELLKPEDVTLLNNMIQKQEDLANHRNPDTEAILA 120 LS + +D+ VR LEG A +L T L D+ L + + E R D + L Sbjct: 73 RLSKEQFDDVLRVRLILEGQAAELGTPHLSARDLATLEKLNDEMERAL--RTTDAKGYLD 130 Query: 121 ANREFHLFIYSLAQRPVLLSIIERLWEQSERYRRILLIQPGMVDGSLNEHRRLVELMTHR 180 AN FHL +Y A P+LL +IE +W Q LL G+LN+ EL+ Sbjct: 131 ANEAFHLILYRAAGSPLLLELIETVWLQVGPISN-LLFGDAQFAGTLNDAHD--ELLNAA 187 Query: 181 QAEEAS--RFLVEHN 193 +A +A+ R +EH+ Sbjct: 188 KARDAAGVRRAIEHD 202 >ref|NP_624078.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM25682.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 225 Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 112/201 (55%), Gaps = 2/201 (0%) Query: 1 VYSILKQWVLSGELAPGERIDQDAVASRLGVSKMPVRSALDKLAAQDLVLLHSHRGVTVT 60 V+ +K+ +++G+L PGER+ + +A +LGVS+ PVR A+ KL + LV++ +G V Sbjct: 17 VFDYMKEAIITGKLKPGERLMEVQLAEKLGVSRTPVREAIRKLELEGLVVMVPRKGAYVA 76 Query: 61 PLSAQHLEDIYLVRCNLEGLAVQLATELLKPEDVTLLNNMIQKQEDLANHRNPDTEAILA 120 L+A+ L ++ VR +LEGLA LA E + E+V L ++ +E D EA++ Sbjct: 77 DLNAKDLLNVLEVRSSLEGLAASLAAERITDEEVEKLKKIV--EEFRIKMEEGDLEALIR 134 Query: 121 ANREFHLFIYSLAQRPVLLSIIERLWEQSERYRRILLIQPGMVDGSLNEHRRLVELMTHR 180 ++EFH I++ ++ L+ I+ L E R+R + + EH+++ EL+ R Sbjct: 135 LDKEFHDLIFAASRNDKLIQIMNNLQEHVHRFRVKYITEEKKAKRIYQEHKKIAELIEQR 194 Query: 181 QAEEASRFLVEHNRKTQQVVL 201 A A ++ +H Q+ V+ Sbjct: 195 DANGARKWAEKHVHNFQEEVV 215 >gb|EAK44757.1| unknown [environmental sequence] Length = 223 Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 103/192 (53%), Gaps = 1/192 (0%) Query: 1 VYSILKQWVLSGELAPGERIDQDAVASRLGVSKMPVRSALDKLAAQDLVLLHSHRGVTVT 60 V +L++ +LSG++A GE + Q A+A L VS++PVR AL +L A+ LV H+G T T Sbjct: 16 VVEVLREKILSGDIAAGEPLRQSALAEALNVSRIPVREALLQLEAEGLVKFEPHKGATAT 75 Query: 61 PLSAQHLEDIYLVRCNLEGLAVQLATELLKPEDVTLLNNMIQKQEDLANHRNPDTEAILA 120 LS + + +++ +R +E + A L+ ED+ ++++ E H + + Sbjct: 76 ELSVEQVTELFELRAMIETDLLAKAIPRLQEEDLIRAERVLEQLESAFKHEDA-VASWSE 134 Query: 121 ANREFHLFIYSLAQRPVLLSIIERLWEQSERYRRILLIQPGMVDGSLNEHRRLVELMTHR 180 N +FH +Y A RP L ++ L +RY R+ L+ G + + +EHR L+ R Sbjct: 135 LNTQFHTCLYQAANRPHTLEVVHGLNTNCDRYIRLQLLLAGGIPAAEHEHRELLNYCKQR 194 Query: 181 QAEEASRFLVEH 192 + E+A+ L H Sbjct: 195 ETEKATALLRHH 206 >ref|NP_718424.1| transcriptional regulator, GntR family [Shewanella oneidensis MR-1] gb|AAN55868.1| transcriptional regulator, GntR family [Shewanella oneidensis MR-1] Length = 223 Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 1/192 (0%) Query: 1 VYSILKQWVLSGELAPGERIDQDAVASRLGVSKMPVRSALDKLAAQDLVLLHSHRGVTVT 60 V +L++ +LSGE+A GE + Q A+A L VS++PVR AL +L A+ LV H+G T T Sbjct: 16 VVEVLREKILSGEIAAGEPLRQTALAEALHVSRIPVREALLQLEAEGLVKFEPHKGATAT 75 Query: 61 PLSAQHLEDIYLVRCNLEGLAVQLATELLKPEDVTLLNNMIQKQEDLANHRNPDTEAILA 120 LS + +++ +R +E + A L+ ED+ ++++ E H + + Sbjct: 76 ELSVAQVTELFELRAMIETDLLAKAIPQLQAEDLIKAERVLEQLESAFKHEDA-VASWSE 134 Query: 121 ANREFHLFIYSLAQRPVLLSIIERLWEQSERYRRILLIQPGMVDGSLNEHRRLVELMTHR 180 N +FH +Y A RP L ++ L +RY R+ L+ G + + +EHR L+ R Sbjct: 135 LNTQFHTCLYQAANRPHTLEVVHGLNTNCDRYIRLQLLLAGGIPAAEHEHRELLNYCKQR 194 Query: 181 QAEEASRFLVEH 192 + E+A+ L H Sbjct: 195 ETEKATALLRHH 206 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 282,237,298 Number of extensions: 9914343 Number of successful extensions: 29401 Number of sequences better than 1.0e-05: 532 Number of HSP's gapped: 29181 Number of HSP's successfully gapped: 532 Length of query: 213 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 93 Effective length of database: 431,425,698 Effective search space: 40122589914 Effective search space used: 40122589914 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)