BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0019.p (438 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAC39266.1| hypothetical protein [Tolypothrix sp. PCC 7601] 96 1e-18 ref|ZP_00070887.1| COG0463: Glycosyltransferases involved in cel... 94 7e-18 gb|EAJ33168.1| unknown [environmental sequence] 88 5e-16 gb|EAG07761.1| unknown [environmental sequence] 86 2e-15 ref|NP_642024.1| glycosyl transferase [Xanthomonas axonopodis pv... 86 2e-15 >emb|CAC39266.1| hypothetical protein [Tolypothrix sp. PCC 7601] Length = 313 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 12/238 (5%) Query: 120 LPKVSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSDGTAELMSRSFGDDPRVI 179 +PK+SV I T+NR LH A++S++ Q Y E+ V DD S DGT EL+S+ D R+ Sbjct: 1 MPKISVTIPTFNRVHLLHYAIESVINQSYQDFELIVCDDGSRDGTPELISQY--TDNRIK 58 Query: 180 FMQNETNQGPGHNRRKALEAHGDGEYTLFLDDDDYLIDRSYFSKAVYFHQQHPEIAFVAA 239 +++++ N G +N R A GEY + DDDD L + ++ V +Q+PEI FV Sbjct: 59 YIRHQQNIGKSNNMRSGFNA-ASGEYFIKFDDDDRLTP-DFLARTVAIFEQNPEIDFVGT 116 Query: 240 NVFL----EYSKTEQLKPSSLRLSRIIPKEAYFKNFEQKGYPKPASTLTA-IFKRDTLMK 294 + ++ E + +S R R N + + + + A +F+R TL + Sbjct: 117 DHWIIDINNVRDDEMTQENSRRWGRKKLAAGIVDNLLEVVFIYQSFQVGATLFRRQTLQE 176 Query: 295 MDILNMNMVN--DASIYLRALLIGDAG-FIDTFAGVYRIHGNNITFNLSQSFLIENLE 349 + + N+ N D +++R L G G ++ YR H N + +L + ++ Sbjct: 177 LGFMLPNIQNCEDNDLFVRLALAGKKGYYLPELLMEYRCHAEQQGINRAIPYLFDKIK 234 >ref|ZP_00070887.1| COG0463: Glycosyltransferases involved in cell wall biogenesis [Trichodesmium erythraeum IMS101] Length = 376 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 118/260 (45%), Gaps = 12/260 (4%) Query: 118 STLPKVSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSDGTAELMSRSFGDDPR 177 + PKV+V + TYN EFL A+ SIL+Q + E+ + DDCS+D T E++ D R Sbjct: 4 NNFPKVTVCLPTYNSGEFLRYAIDSILEQTFTDFELIISDDCSTDNTPEIIRSYLEKDSR 63 Query: 178 VIFMQNETNQGPGHNRRKALEAHGDGEYTLFLDDDDYLIDRSYFSKAVYFHQQHPEIAFV 237 + ++QN N G N + LE+ GEY DD ++ ++ + V +++ + V Sbjct: 64 IQYLQNSHNLGLFPNWNRCLES-ASGEYITVFAQDDVMLPKN-LEQKVKILEKYQNVGLV 121 Query: 238 AANVFLEYSKTEQLKPSSLRLSR--IIPKEAYFKNFEQKGYPKPASTLTAIFKRDTLMKM 295 +++ + S L ++ E + K + G P + +R L K+ Sbjct: 122 TSSIMVVDSDNNYLNWDWANYDEDSLVNGEEWVK--KNLGKANPICCPFVLIRRYILEKV 179 Query: 296 -DILNMNMV--NDASIYLRALLIGDAGFIDTFAGVYRIHGNNITFNLSQSFLIENLEEKR 352 N N + D ++LR L+ D F+ G YR H N T + + + ++E Sbjct: 180 GGKFNDNYLFAGDLELWLRIALVADLYFVKEILGYYRWHKENKTHSFND---FDQVKEHL 236 Query: 353 LIRNMAIERYGYSKTEMNEW 372 I + I+ S E+N W Sbjct: 237 QICSNLIDSLNLSDLELNYW 256 >gb|EAJ33168.1| unknown [environmental sequence] Length = 133 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 5/134 (3%) Query: 123 VSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSDGTAELMSRSFGDDPRVIFMQ 182 +SV + T+NR + + +A++S+L QDYPH E+ V+DD S+D T + ++R + D+PRV + Sbjct: 2 ISVYMPTFNRVDMVQRAIRSVLAQDYPHLELLVVDDASTDTTWDTLNRIYADEPRVRLFR 61 Query: 183 NETNQGPGHNRRKALEAHGDGEYTLFLDDDDYLIDRSYFSKAVYFHQQHPEIAFVAANVF 242 E QG R A+ A GE+ LDDDD + S + Q+ AFV ++ F Sbjct: 62 QEKGQGACAARNLAI-AEAKGEFVTGLDDDDEFLPNRLSSLYQAYDDQY---AFVCSSYF 117 Query: 243 LEYSKT-EQLKPSS 255 +Y +QL P S Sbjct: 118 WDYGTIRKQLYPES 131 >gb|EAG07761.1| unknown [environmental sequence] Length = 288 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 123/261 (47%), Gaps = 29/261 (11%) Query: 120 LPKVSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSDGTAELMSRSFGDDPRVI 179 PKVSV++ YN F+ QA+ S+LQQDYP+ E+ V+DD S D + E+++ S+G+ RV+ Sbjct: 7 CPKVSVVMPCYNNAAFVRQAIDSVLQQDYPNIELIVVDDGSKDNSLEVLA-SYGERIRVV 65 Query: 180 FMQNETNQGPGHNRRKALEAHGDGEYTLFLDDDDYLIDRSYFSKAVYFHQQHPEIAFVAA 239 + NQGP R + H G+Y FLD DD + S + F Q +P+ F+A Sbjct: 66 V---QPNQGPAAARNNGIR-HATGDYIAFLDSDDLWLPGK-LSAQLEFLQTNPD--FIAC 118 Query: 240 NVFLEYSKTEQLKPSSLRLSRIIPKEAYFKNFEQKGY-------PKPASTLTAIFKRDTL 292 F +S + + + I ++ ++ G+ T++ + K+ + Sbjct: 119 --FCSWSVWDGNEIPAFNTP--IAEQRLELQQDKSGWLYLPLLDDSVIHTISVVIKKQIV 174 Query: 293 MKMDILN--MNMVNDASIYLRALLIGDAGFIDTFAGVYRIHGNNITFNL-SQSFLIENLE 349 + N + D +LR +G + T +YR + + T + +++F + Sbjct: 175 DSVGFFNEEFRVGEDHDYWLRLSRVGKIAKLKTAYALYRANLQSTTNKVHAKNFSL---- 230 Query: 350 EKRLIRNMAIERYGYSKTEMN 370 L+ A+E+YG E N Sbjct: 231 ---LVLQAAVEKYGLCDPEGN 248 >ref|NP_642024.1| glycosyl transferase [Xanthomonas axonopodis pv. citri str. 306] gb|AAM36560.1| glycosyl transferase [Xanthomonas axonopodis pv. citri str. 306] Length = 316 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 115/250 (46%), Gaps = 16/250 (6%) Query: 115 AAPSTLPKVSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSDGTAELMSRSFGD 174 +A + P VSV+I +N F+ + + S+L+ YP KEI +IDD S D T E +S+ D Sbjct: 8 SARTRWPLVSVLIPAFNHARFVQRCLDSVLEDPYPCKEIVIIDDGSRDATGEKISQWISD 67 Query: 175 DPR---VIFMQNETNQGPGHNRRKALEAHGDGEYTLFLDDDDYLIDRSYFSKAVYFHQQH 231 V F+Q E AL A GEY DDYL+ ++ Y + H Sbjct: 68 HGHRLPVHFVQRENRGVAATLNELALRAR--GEYLRLGASDDYLLPGGLDAQVRYL-RGH 124 Query: 232 PEIAFVAANVFLEYSKTEQLKPSSLRLSRIIPKEAY-----FKNFEQKGYPKPASTLTAI 286 P+ V + + + + + S++R + K+ Y ++ + + S A+ Sbjct: 125 PQKLAVIGDACVVDAHGQLMHASAMRDLHRVDKDLYRSESGIRHAVIRQW--AVSGAVAL 182 Query: 287 FKRDTLMKMDILNMNM-VNDASIYLRALLIGDA-GFIDTFAGVYRIHGNNITFNLSQSFL 344 +R L + ++ + D +LR L+ G+A GFID YR+HGNN++ Sbjct: 183 LRRSALDARSRWDESLRIEDWDFFLR-LVAGNALGFIDLPVCAYRLHGNNLSKTADVPAR 241 Query: 345 IENLEEKRLI 354 I NL E R + Sbjct: 242 IANLCESRQV 251 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 626,123,478 Number of extensions: 25434321 Number of successful extensions: 70649 Number of sequences better than 1.0e-05: 588 Number of HSP's gapped: 70810 Number of HSP's successfully gapped: 592 Length of query: 438 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 309 Effective length of database: 406,989,807 Effective search space: 125759850363 Effective search space used: 125759850363 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)