BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0010.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_349632.1| Galactose mutarotase related enzyme [Clostridiu... 241 2e-62 ref|NP_561199.1| conserved hypothetical protein [Clostridium per... 237 2e-61 ref|NP_978036.1| lacX protein, putative [Bacillus cereus ATCC 10... 235 9e-61 ref|NP_844071.1| lacX protein, putative [Bacillus anthracis str.... 231 2e-59 ref|NP_831376.1| LACX protein [Bacillus cereus ATCC 14579] >gi|2... 229 6e-59 >ref|NP_349632.1| Galactose mutarotase related enzyme [Clostridium acetobutylicum] pir||A97273 galactose mutarotase related enzyme [imported] - Clostridium acetobutylicum gb|AAK80972.1| Galactose mutarotase related enzyme [Clostridium acetobutylicum] Length = 298 Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 179/297 (60%), Gaps = 8/297 (2%) Query: 1 MNTILRSGSARAEISSLGAELVSFTKNDTGTEYIWSGDAAYWTGRSPVLFPIIGAVRNGE 60 M L + + +AE+S GAEL S +T EYIW+ +++YW +P+LFPI+G V++ + Sbjct: 1 MCVRLENENFKAELSESGAELTSLKSKNTDNEYIWTANSSYWGRHAPILFPIVGKVKDNK 60 Query: 61 IKVDGQTYKLANHGFARRSEFTIVEADESRAVFLLTSSGHTLSSYPFQFNLYITYTLNES 120 ++ + Y L+ HGFAR EF + + RAVF L + TL YP++F L + Y L +S Sbjct: 61 YRIADKVYNLSQHGFARDMEFEVEDNASDRAVFKLVWNDETLEKYPYKFELRVIYVLKDS 120 Query: 121 TLKLEYRVENTDGQNIFFQLGTHPAFNCPL------DENGSFSDYVLEFSENETLDREFL 174 T+ + Y V+N D ++IFF +G HP FNCP+ ++ F DY +EF + ET L Sbjct: 121 TVDVTYNVKNVDDKDIFFSIGAHPGFNCPVIGKQSENDELQFEDYYIEFEKRETTGVVKL 180 Query: 175 NSAGLRISGRSEAVLSGERILPLTHEMFKDDALVFQNVASRTITLKSKLTEKSVAVSFEG 234 NS+ L +S + L IL L+ ++FK AL+ +++ S +I+LK+ SV VSFEG Sbjct: 181 NSSNL-LSRNTSPFLYASNILNLSEKLFKQGALILKDLDSTSISLKNDKNTTSVTVSFEG 239 Query: 235 FPDLGIWQKPN-APFLCIEPWQGFADSDEFQGELSEKEGIVSLAPGDNFTSSLTIKI 290 FP +G+W KP APF+CIEPW G AD ++F G+ EKE + L G F + +I I Sbjct: 240 FPYVGLWSKPEGAPFVCIEPWFGHADYEDFNGDFREKEDGLKLEVGKEFECTYSITI 296 >ref|NP_561199.1| conserved hypothetical protein [Clostridium perfringens] dbj|BAB79989.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 291 Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 124/289 (42%), Positives = 168/289 (58%), Gaps = 3/289 (1%) Query: 1 MNTILRSGSARAEISSLGAELVSFTKNDTGTEYIWSGDAAYWTGRSPVLFPIIGAVRNGE 60 M L + + +S+ G EL S TE++WSGD AYW +P+LFPI+G V NG+ Sbjct: 1 MIYTLENQHLKISLSNHGGELHSIKGKKDNTEFLWSGDEAYWKYHAPILFPIVGKVFNGK 60 Query: 61 IKVDGQTYKLANHGFARRSEFTIVEADESRAVFLLTSSGHTLSSYPFQFNLYITYTLNES 120 VDG TY+L HG AR +F ++E ++ F L S TL YPF+F+L I YTLN+ Sbjct: 61 YTVDGITYELPQHGLARVRDFEMIEQTKNSISFELKYSEDTLKVYPFKFSLIIKYTLNDI 120 Query: 121 TLKLEYRVENTDGQNIFFQLGTHPAFNCPLDENGSFSDYVLEFSENETLDREFLNSAGLR 180 L ++Y V+N D + ++F +G HPAF CP+ EN F DY EF++ E L G Sbjct: 121 NLSIDYIVKNLDNKEMYFSIGAHPAFMCPI-ENDKFDDYYFEFNKKENASIMQLVGPGY- 178 Query: 181 ISGRSEAVLSGERILPLTHEMFKDDALVFQNVASRTITLKSKLTEKSVAVSFEGFPDLGI 240 S + L E I+ L+ ++FK+DALVF+N+ S I+LKSK +K + F FP LG+ Sbjct: 179 FSKEEKPYLKDEHIINLSTDLFKNDALVFKNLKSNKISLKSKNHKKYLEFDFGEFPYLGL 238 Query: 241 WQKPN-APFLCIEPWQGFADSDEFQGELSEKEGIVSLAPGDNFTSSLTI 288 W K APF+CIEPW G AD D F GE +K I SL P F + I Sbjct: 239 WTKDTGAPFVCIEPWFGHADFDGFNGEFKDKAAIQSLMPNKEFHCNYNI 287 >ref|NP_978036.1| lacX protein, putative [Bacillus cereus ATCC 10987] gb|AAS40644.1| lacX protein, putative [Bacillus cereus ATCC 10987] Length = 290 Score = 235 bits (600), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 117/291 (40%), Positives = 172/291 (59%), Gaps = 3/291 (1%) Query: 1 MNTILRSGSARAEISSLGAELVSFTKNDTGTEYIWSGDAAYWTGRSPVLFPIIGAVRNGE 60 M +++ IS GAEL S + TEY+W GDA YW R+P+LFPI+G + + Sbjct: 1 MTATIQNEKVIVTISDKGAELQSVRLKEDNTEYLWQGDATYWGRRAPILFPIVGRLVDNT 60 Query: 61 IKVDGQTYKLANHGFARRSEFTIVEADESRAVFLLTSSGHTLSSYPFQFNLYITYTLNES 120 VDG+ Y L HGFAR F++ E E++ +++TS+ TL YP++F L ++Y L+ Sbjct: 61 YYVDGKPYSLTQHGFARDLTFSVEEQSETKITYIVTSNEETLKKYPYEFELLVSYELDGQ 120 Query: 121 TLKLEYRVENTDGQNIFFQLGTHPAFNCPLDENGSFSDYVLEFSENETLDREFLNSAGLR 180 T+ + Y V N + +FF +G HP FN PL E SF+DY L F+ +E L+ L G Sbjct: 121 TVHVTYEVNNPASKEMFFSIGAHPGFNFPLLEGESFTDYHLSFNGSERLETSVLE--GPY 178 Query: 181 ISGRSEAVLSGERILPLTHEMFKDDALVFQNVASRTITLKSKLTEKSVAVSFEGFPDLGI 240 +S + + + LPLT+++FK+DAL+F+N+ + I+++S K V V F+GFP +G+ Sbjct: 179 LSNKKQLIAESTNELPLTYDLFKNDALIFENMNTDEISIRSHKHNKFVKVEFDGFPFVGV 238 Query: 241 WQK-PNAPFLCIEPWQGFADSDEFQGELSEKEGIVSLAPGDNFTSSLTIKI 290 W NAPFLCIEPW G AD + EK+GI SL + FT +I I Sbjct: 239 WTPGENAPFLCIEPWYGIADEVNPAKDFKEKKGIQSLQAHETFTCRYSITI 289 >ref|NP_844071.1| lacX protein, putative [Bacillus anthracis str. Ames] gb|AAP25557.1| lacX protein, putative [Bacillus anthracis str. Ames] Length = 290 Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 115/291 (39%), Positives = 170/291 (58%), Gaps = 3/291 (1%) Query: 1 MNTILRSGSARAEISSLGAELVSFTKNDTGTEYIWSGDAAYWTGRSPVLFPIIGAVRNGE 60 M +++ IS GAEL S + TEY+W GD+ YW R+P+LFPI+G + + Sbjct: 1 MIATIQNEKVIVSISDKGAELQSVRLKEDNTEYLWQGDSTYWGRRAPILFPIVGRLVDNT 60 Query: 61 IKVDGQTYKLANHGFARRSEFTIVEADESRAVFLLTSSGHTLSSYPFQFNLYITYTLNES 120 VD + Y L HGFAR FT+ E E++ +++TS+ TL YP++F L ++Y L+ Sbjct: 61 YYVDDKPYSLTQHGFARDLTFTVKEQSETKITYIVTSNEETLKKYPYEFELLVSYELDGQ 120 Query: 121 TLKLEYRVENTDGQNIFFQLGTHPAFNCPLDENGSFSDYVLEFSENETLDREFLNSAGLR 180 + + Y V N + +FF +G HP FN PL E SF+DY L F+ +E L+ L G Sbjct: 121 IVHVTYEVNNPTSKEMFFSIGAHPGFNFPLLEGESFTDYHLSFNGSERLETSVLE--GPY 178 Query: 181 ISGRSEAVLSGERILPLTHEMFKDDALVFQNVASRTITLKSKLTEKSVAVSFEGFPDLGI 240 +S + + + LPLT+++FK+DAL+F+N+ + I+++S K V V F+GFP +G+ Sbjct: 179 LSNKKQLIAESTNELPLTYDLFKNDALIFENMNTDEISIRSHKHNKFVKVEFDGFPFVGV 238 Query: 241 WQK-PNAPFLCIEPWQGFADSDEFQGELSEKEGIVSLAPGDNFTSSLTIKI 290 W NAPFLCIEPW G AD + EK+GI SL + FT +I I Sbjct: 239 WTPGENAPFLCIEPWYGIADEVNPAKDFKEKKGIQSLQANETFTCRYSITI 289 >ref|NP_831376.1| LACX protein [Bacillus cereus ATCC 14579] gb|AAP08577.1| LACX protein [Bacillus cereus ATCC 14579] Length = 290 Score = 229 bits (584), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 113/291 (38%), Positives = 170/291 (58%), Gaps = 3/291 (1%) Query: 1 MNTILRSGSARAEISSLGAELVSFTKNDTGTEYIWSGDAAYWTGRSPVLFPIIGAVRNGE 60 M +++ IS GAEL S + TEY+W GD+ YW R+P+LFPI+G + + Sbjct: 1 MTATIQNEKVIVSISDKGAELQSVRLKEDNTEYLWQGDSTYWGRRAPILFPIVGRLVDNT 60 Query: 61 IKVDGQTYKLANHGFARRSEFTIVEADESRAVFLLTSSGHTLSSYPFQFNLYITYTLNES 120 VDG+ Y L HGFAR F + E E++ +++TS+ TL YP++F L ++Y LN Sbjct: 61 YYVDGKPYSLTQHGFARDLTFFVKEQSETKITYIVTSNEETLKKYPYEFELLVSYELNGQ 120 Query: 121 TLKLEYRVENTDGQNIFFQLGTHPAFNCPLDENGSFSDYVLEFSENETLDREFLNSAGLR 180 ++ + Y V N + +FF +G HP FN PL + SF+DY L F+ +E L+ L G Sbjct: 121 SVHITYEVNNPTSKEMFFSIGAHPGFNFPLLDGESFTDYHLSFNGSERLETSVL--EGPY 178 Query: 181 ISGRSEAVLSGERILPLTHEMFKDDALVFQNVASRTITLKSKLTEKSVAVSFEGFPDLGI 240 +S + + + LPLT+++FK+DAL+F+++ + I+++S K V V F+GFP +G+ Sbjct: 179 LSNKKQLIAENTTELPLTYDLFKNDALIFEHMNTNEISIRSHKHNKFVKVEFDGFPFVGV 238 Query: 241 WQK-PNAPFLCIEPWQGFADSDEFQGELSEKEGIVSLAPGDNFTSSLTIKI 290 W NAPFLCIEPW G AD + K+GI SL + FT +I I Sbjct: 239 WTPGDNAPFLCIEPWYGIADEVNPAKDFKNKKGIQSLQANETFTCRYSITI 289 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 436,148,316 Number of extensions: 18313458 Number of successful extensions: 41150 Number of sequences better than 1.0e-05: 54 Number of HSP's gapped: 41065 Number of HSP's successfully gapped: 54 Length of query: 291 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 167 Effective length of database: 420,565,302 Effective search space: 70234405434 Effective search space used: 70234405434 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 125 (52.8 bits)