BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0005.p
         (80 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_242781.1| small acid soluble protein [Bacillus halodurans...    74   7e-13
ref|ZP_00097953.1| hypothetical protein [Desulfitobacterium hafn...    53   2e-06

>ref|NP_242781.1| small acid soluble protein [Bacillus halodurans]
 pir||C83889 small acid soluble protein BH1915 [imported] - Bacillus
          halodurans (strain C-125)
 dbj|BAB05634.1| small acid soluble protein [Bacillus halodurans]
          Length = 93

 Score = 74.3 bits (181), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 4/68 (5%)

Query: 4  LKANVMKNEGFRVDPDRPDDVKYEVAKELGIPLQPGNNGALTTESAGQVGGKIGGSMVRE 63
          LK +VM  +G++      +DVKYEVA+ELG+PL  G NG L++  AG+VGG+IGG MV+E
Sbjct: 19 LKQDVMATQGYQTS----NDVKYEVARELGVPLTKGYNGKLSSNEAGKVGGRIGGQMVKE 74

Query: 64 MIRLAQEQ 71
          MI +A +Q
Sbjct: 75 MISMALQQ 82


>ref|ZP_00097953.1| hypothetical protein [Desulfitobacterium hafniense]
          Length = 74

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 22 DDVKYEVAKELGIPLQPGNNGA--LTTESAGQVGGKIGGSMVREMIRLAQEQLTN 74
          D+ K EVA ELG+  Q    G   +T+   G VGG+IGGSMV+ MIR A+E L N
Sbjct: 17 DEFKMEVASELGLTEQIQTKGWANMTSRDCGHVGGRIGGSMVKAMIRRAEESLKN 71


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.309    0.129    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 114,393,913
Number of extensions: 4082022
Number of successful extensions: 9791
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9796
Number of HSP's successfully gapped: 2
Length of query: 80
Length of database: 757,237,578
Length adjustment: 50
Effective length of query: 30
Effective length of database: 621,482,628
Effective search space: 18644478840
Effective search space used: 18644478840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 120 (50.8 bits)